SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1942

Length: 1316 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1942

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription regulator/ zinc ion binding protein [Arabidopsis thaliana] emb\|CAB61987.1\| putative protein [Arabidopsis thaliana] gb\|AAK76632.1\| unknown protein [Arabidopsis thaliana] gb\|AAL85048.1\| unknown protein [Arabidopsis thaliana] gb\|AEE78307.1\| tra	-	-	7.00649e-43	30%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	34%
Blast2go	transcription regulator zinc ion binding protein	-	-	0.0	52%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C2HC5-type	IPR009349	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SIC5

Fln msg: your sequence is shorter than subject: 397 - 418

Fln protein: MDNLPPSSPEDYLRKALSDGRLIDSEALPRIVLYCERARPSDAAELLQNMIPENGEQVITEYLHRRSLGSVYDSKDDSPDKPMRVYRKPEVSSTGSSTGKNKNKVRQSKQATQSIRATDRTHEHDGVSTRPGDNGKEHIQEREGTLSVPLQNLRRGEPCDCQARRHNLLNNCLGCGKVICEQEGEGPCSFCGSEVWHHDRPIQHLRGPSEQISESEEKANVLKNKLLAYDRNEKSQTTIIDDQSDYFNIDGNSWLSPEEKKKLQREELEKAENVSQRRTVLLLDPAGRKVSMVSEDDIHEDIQRTDVSFHFANRENFQKFHVEPSPNIKTHPVYVDVGKSRQRIDSRSKRIPDSMRISSGRVKHEFSDLHSSTGRAILDAFDICMPKDDTVKLFSP*

Protein Length: 398

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTGTAAATATATAAATGACGCCGATGGTACAGAGATAAATGTGTATGAGAAGAAATCCTGGTTGATGGCGGGCTGGGCGAAACT_-_ATGGACAATTTACCACCGTCATCCCCAGAAGATTATCTGCGGAAAGCTCTCAGTGATGGACGTCTCATCGACTCAGAAGCTCTTCCCAGGATTGTTTTATATTGTGAACGAGCTCGGCCTTCAGATGCCGCGGAGCTACTCCAAAATATGATTCCAGAAAATGGTGAACAAGTAATTACTGAATATCTTCACAGGAGATCTCTTGGAAGCGTATATGACAGCAAAGATGATTCTCCGGACAAACCTATGCGAGTCTATAGGAAGCCTGAAGTATCTTCAACTGGTTCATCCACTGGTAAAAACAAGAATAAAGTCAGACAAAGTAAACAGGCTACTCAAAGCATTAGAGCTACTGATAGAACACATGAACATGATGGAGTTAGTACGAGGCCAGGGGATAATGGAAAGGAGCATATACAAGAAAGAGAGGGTACATTATCTGTTCCTCTACAGAACTTGAGGCGTGGTGAGCCGTGTGATTGTCAAGCCAGGAGGCACAATTTACTGAACAATTGCCTTGGTTGTGGTAAGGTTATCTGTGAGCAGGAGGGTGAAGGTCCCTGCAGTTTTTGTGGGAGTGAGGTTTGGCACCATGACCGACCCATACAACATTTGAGAGGGCCTTCAGAACAGATATCAGAATCAGAAGAGAAAGCGAATGTTTTGAAGAATAAACTTCTAGCTTACGACCGCAATGAAAAGTCACAGACAACTATTATTGACGATCAAAGTGATTACTTCAATATTGATGGGAATTCTTGGTTATCACCTGAGGAGAAGAAGAAGCTGCAGAGAGAGGAACTTGAGAAAGCTGAAAATGTAAGTCAGAGAAGAACAGTTCTGTTGCTGGATCCAGCTGGTAGAAAGGTTTCAATGGTTAGTGAAGATGATATTCATGAAGATATTCAGCGAACAGATGTATCTTTCCATTTTGCAAACAGAGAAAATTTCCAAAAGTTCCATGTAGAGCCAAGTCCAAACATCAAAACACACCCAGTTTATGTTGATGTTGGCAAATCTCGACAGCGCATTGACTCTAGAAGTAAGAGAATACCGGACAGCATGAGAATTAGCAGTGGAAGAGTAAAGCATGAGTTTTCCGACTTACACTCTTCGACAGGAAGGGCTATATTAGATGCATTTGATATTTGCATGCCAAAAGATGATACAGTAAAGCTATTCTCCCCCTAa___ATGTCCAGAGCAAA

Fln Alignment:

Contig1942___LRKALSDGRLIDSEALPRIVLYCERARPSDAAELLQNMI-PENGEQVITEYLHRRSLGSVYDSKDDSPDKPMRVYRKPEVSSTGSSTGKNKN---------KVRQSKQATQSIRATDRTHEHDGVSTRPGDNGKEHIQEREGTLSVPLQNLRRGEPCDCQARRHNLLNNCLGCGKVICEQEGEGPCSFCGSEVWHHDRPIQHLRGPSEQISESEEKANVLKNKLLAYDRNEKSQTTIIDDQSDYFNIDGNSWLS--PXXXXXXXXXXXXXXXNVSQRRTVLLLDPAGRKVSMVSEDDIHEDIQRTDVSFHFANRENFQKFHVEPSPNIKTHPVYVDVGKSRQRIDSR--SKRIPDSMRIS-SGRVKHEFSDL
D7SIC5______________LCKGMETGLDLDEDIISGLVSYCELAPPLDAQEYLHNIIGQEAGQSVIEEYLRRRGHKDSHSSTPDVPTSKLHAYVKPP-SNEGSFGGAKKPLRTQKQVMVPVNQEKQAPTDTSNSRNTHVANQGGSRKKKAGKVVSLAEAAKGSIVF---KQGKPCTCQARQHTLVSNCLSCGKIVCEQEGEGPCSFCGALVLREGSTYAGLDESIVPLTDAEAAAEAYAKRLVEYDRDSAARTTVIDDQSDYYEIEGNSWLSVEEKELLRKKKQEIEAAEQAKRNKVIVTFDLVGRKV-MVNQDEVSELESENRILRPPDEREINR---IKPNPTLKVQPIFMDPGPNRKPAKGKQLNKSLGNGMRLEITGRVQHDSNEL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
981	12		87		0.992554
993	87	12			0.992554
994	12		87		0.992554
996		12	87		0.992554
997	87	12			0.992554
1000	87	12			0.992554
1003	87		12		0.992554
1007	12			87	0.992554
1008	12	87			0.992554
1010	12			87	0.992554
1011		12	87		0.992554
1031	11			88	0.923564
1248		11	88		0.923564
1251			88	11	0.923564
1290	33	66			1.0
1291		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain