SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1894

Length: 3318 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1894
TCACGTTGAGCTCGGCAGGAAGTGCTCAGTTTTCCAGATGGCGATGGAGGGAGAGGAGGCTTTGGATTCTAAGCTTCCCGAGCTCAAATTAGATGCAAAGCAGGCTCAAGGATTTATCGCCTTTTACGGGAAGCTATCGCCTAATGATCAAGCCGTTCGCTTCTTTGACCGTCGGGACTACTATACAGCTCATGGCGAAAATGCTATTTTCATTGCTAAAACTTATTACCGTACAACAACTGCTCTTCGGCAGTTGGGTAATGGAAACAATGCTCTTTCAAGTGTAAGTATTAGCAAGAATATGTTTGAAAGCATTATCCGGGACTTGCTCTTAGAGAGAACTGACCACATTGTTGAGCTCTATGAGGGGAGTGGCTCAAATTGGAGGTTGGCAAAGACTGGAACTCCTGGCAAGCTTGGCTGTTTTGAGGACATTCTATTTGCAAGCAATGACATGCAAGATACACCTGTGATAATAGCTGTGCAATATGTTACTCAGGATAATGGATACTTGGTGGGGATGGCATTTATTGATCTGACTAAGAGAACCTTAGGCATGACAGAGTTTATTGATGACAACCAATACACAAATCTGGAATCTGCCATGGTAGCTCTTGGATGCAGGGAATGTTTGTTACCGCTACACACTGGGAAGTCACCTGCTAATAAGCGCCTGCATGATGTGTTGGCGAGATGTAATGTACTCTTAACTGAAAAAAAGAAAGCTGAGTTCAATTCCAGGGATGTTGATCAAGACCTTAGTCGCCTAGTGAAAGGTCCTATAGAGTCATTGAGGGATTTAGTTGCAAGTTCAGATTGTGCCGCTGGTGCTATAGGGGCTCTCCTCTCTTATACAGATTTGCTCGCAGATGATAACAATTATGGGAGATTTAACATACAACGGTATAGCTTGGAGAGCTACATGCGGCTGGATGCTGCAGCACTACGAGCTTTAAATGTTCTTGAAAGTAAGACAGATGCAAACAAGAATTTCAGCTTGTTTGGACTGATGAATAGGACTTGTACTGCTGGTATGGGGAAGAGGTTGTTGAACAGGTGGCTCAAACAACCTCTATTAGATGTAGATGAGATCAAATGTAGGTTGGATCTGGTGCAGGTATTTGTTGAGGACACAGCATTGCGCCAGGATTTGAGACAGCATCTGAAAAGAATTACAGATATTGAACGACTTGTGCGGAAACTTGAGAAGAGGAGTGCTAATCTACAAGATATTGTAAAGCTGTATCAGACAAGCATACGGCTTCCTGTCATTAAAAGTTGTCTAGAACGATATGAAGGTGTATTTTCCTTATTAATCAGAGAGAGGTATACAGATGCCTTTGAATTTTGGACTGATGAGGAGCATTTGACAAAGTTTTCTGCTCTTGTTGAGGCTGCTGTTGATCTTGATCAACTTGACAATGGAGAATACATGATCTCAGCCGGTTATGATTCTAGCCTGTTGACGCTCAAGGATGAACGAGATGGAGTGGAAGAACAAATACGGAAGGTGCATCAGCAAGCTGCAAATGATCTGGATCTTCCTGTGGACAAGAGTTTGAAACTGGACAAGGGCACACAATTTGGACATGTATTCAGGATTACAAAGAAAGAGGAACCAAAAGTACGGAAGAAGTTGAATACACAGTATATTGTTTTAGAAACAAGAAAGGATGGTGTCAAATTCACAAATGCAAAACTCAAACGGCTCGGGGAGCAGTACATGAAGTTGGTTGAGGCATATAACAGTACTCAAAGAGAACTCGTTAGCCGGGTAGTACAAACGGCAGCAACATTTACTGAAGTTTTTGAAGTTCTTGCTAGTCTACTTTCTGAATTGGATGTTCTGCTGAGTTTTGCTGATCTAGCAATCTGTTGTCCCACTCCATATGTGAGACCAGATATCACTCCATCGGAGGATGGGGATATCATACTCGAAGGAAGCAGACATCCTTGTGTTGAGGCTCAGGATGGTGTAAATTTCATACCAAATGATTGCCGCCTTGTTAGGGGTAAAAGTTGGTTCCAAATTATCACCGGACCAAACATGGGTGGCAAATCAACCTTCATCAGGCAGGTTGGTGTTAATGTGCTTATGGCACAAGTTGGTTGTTTTGTTCCATGTGATCAAGCAACAATAAGTATTCGTGATTGTATATTTGCTCGTGTTGGCGCAGGAGATTGCCAACTTCGAGGAGTGTCCACGTTCATGTCAGAAATGTTGGAGACTGCAACCATCTTGAAGGGAGCAACCCATAAATCTCTAATAATAATTGATGAACTAGGACGCGGCACATCGACGTATGATGGATTTGGATTGGCTTGGGCGATCTGTGAATACCTTGTGCAAGTTACGAGGGCGCCTACACTCTTTGCAACTCACTTCCATGAACTTACAGCACTAGCTCATTCAGAGGAAACACCTGTCCATGGACCCCCCAAGGGCCCACCTGTGGGTATTGCAAATTATCACGTCAGTGCACATATTGATACAAATACTCAAAAGTTGACTATGCTGTACAAGGTTGCGGAAGGGCCATGTGACCAGAGTTTTGGAATTCATGTGGCTGAATTTGCCCAGTTTCCTGAAAGTGTGATTGCTCTTGCCAAGGAGAAAGCAGCTGAACTAGAAGACTTTTCTTCTGTCTCTGGAAATGTAGATCAAACAATGGAAGAGGTGGGAGTGAAACGGAAACGAGTGTGTGGACCTGATGATATGTCTAGAGGTGCAGCCCTAGCAAGGAATTTTTTGCAGGATTTTTCCTCATTACCTCTTGATCAAATGGATTATGAACAAGCTTTTCAAGCAGTCAATAAATTGAAGTCTGGCTTGGAGAAAGATGCTGTGAACAATTCTTGGCTACAACAGTTCTTCTAGATATCTTAAAACCCTTTGAATTCGCAATCAGTCCCTTCAAAAATGTGAACTATTGGCCTGGAGAATCACCTATCAATTTGGCAGTAACAGATGGCATATATAAACATGTCTAAATTTTGACAGAAGGCTTGGAAGCCCTTGCTAAATTCTGTTTTTGGATGGTGGGCTTGCTGAAGGATTTTGTGAGGTATTTATTGCAGATGGATATGTATAGATTTCAGCATATGTATATAAAAGCAAGTAGGTTGTTTCAATTTGTTCCTATGGCAAATGATCAGATCTTAGGTTTTGTTTTGCCATTATTAAACATTACTTTGGCGTTTATTAATGCTAATTACATATATGGGGGATGAACCCTCCACGAACAATTGATATGATGTTCTCATTTTGGTAAAACAAAGGTTCAACTTTTGCTTGAGATGGATTAGAAATATTCAAAC

Ace file of the UniGene sp_v2.0_unigene1894 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA mismatch repair protein MSH2, putative n=1 Tax=Ricinus communis RepID=B9RE38_RICCO	-	-	70%
FL-Next	sp=DNA mismatch repair protein Msh2; Arabidopsis thaliana (Mouse-ear cress).	-	-	68%
Blast2go	dna mismatch repair protein msh2	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	regulation of apoptotic process	GO:0042981	Biological Process	81%
Blast2go	pyrimidine dimer repair	GO:0006290	Biological Process	81%
Blast2go	mismatch repair	GO:0006298	Biological Process	81%
Blast2go	negative regulation of reciprocal meiotic recombination	GO:0045128	Biological Process	81%
Blast2go	damaged DNA binding	GO:0003684	Molecular Function	81%
Blast2go	mismatched DNA binding	GO:0030983	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	MutSalpha complex	GO:0032301	Cellular Component	81%
Blast2go	MutSbeta complex	GO:0032302	Cellular Component	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	DNA mismatch repair protein MutS, C-terminal	IPR000432	-	-
Sma3	DNA mismatch repair protein MutS-like, N-terminal	IPR007695	-	-
Sma3	DNA mismatch repair protein MutS, core	IPR007696	-	-
Sma3	DNA mismatch repair protein MutS, connector	IPR007860	-	-
Sma3	DNA mismatch repair protein MutS, clamp	IPR007861	-	-
Sma3	DNA mismatch repair protein, MSH2	IPR011184	-	-
Sma3	DNA mismatch repair protein MutS-homologue MSH6	IPR015536	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O24617

Fln msg:

Fln protein: MAMEGEEALDSKLPELKLDAKQAQGFIAFYGKLSPNDQAVRFFDRRDYYTAHGENAIFIAKTYYRTTTALRQLGNGNNALSSVSISKNMFESIIRDLLLERTDHIVELYEGSGSNWRLAKTGTPGKLGCFEDILFASNDMQDTPVIIAVQYVTQDNGYLVGMAFIDLTKRTLGMTEFIDDNQYTNLESAMVALGCRECLLPLHTGKSPANKRLHDVLARCNVLLTEKKKAEFNSRDVDQDLSRLVKGPIESLRDLVASSDCAAGAIGALLSYTDLLADDNNYGRFNIQRYSLESYMRLDAAALRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVDEIKCRLDLVQVFVEDTALRQDLRQHLKRITDIERLVRKLEKRSANLQDIVKLYQTSIRLPVIKSCLERYEGVFSLLIRERYTDAFEFWTDEEHLTKFSALVEAAVDLDQLDNGEYMISAGYDSSLLTLKDERDGVEEQIRKVHQQAANDLDLPVDKSLKLDKGTQFGHVFRITKKEEPKVRKKLNTQYIVLETRKDGVKFTNAKLKRLGEQYMKLVEAYNSTQRELVSRVVQTAATFTEVFEVLASLLSELDVLLSFADLAICCPTPYVRPDITPSEDGDIILEGSRHPCVEAQDGVNFIPNDCRLVRGKSWFQIITGPNMGGKSTFIRQVGVNVLMAQVGCFVPCDQATISIRDCIFARVGAGDCQLRGVSTFMSEMLETATILKGATHKSLIIIDELGRGTSTYDGFGLAWAICEYLVQVTRAPTLFATHFHELTALAHSEETPVHGPPKGPPVGIANYHVSAHIDTNTQKLTMLYKVAEGPCDQSFGIHVAEFAQFPESVIALAKEKAAELEDFSSVSGNVDQTMEEVGVKRKRVCGPDDMSRGAALARNFLQDFSSLPLDQMDYEQAFQAVNKLKSGLEKDAVNNSWLQQFF*

Protein Length: 948

Fln nts: TCACGTTGAGCTCGGCAGGAAGTGCTCAGTTTTCCAG_-_ATGGCGATGGAGGGAGAGGAGGCTTTGGATTCTAAGCTTCCCGAGCTCAAATTAGATGCAAAGCAGGCTCAAGGATTTATCGCCTTTTACGGGAAGCTATCGCCTAATGATCAAGCCGTTCGCTTCTTTGACCGTCGGGACTACTATACAGCTCATGGCGAAAATGCTATTTTCATTGCTAAAACTTATTACCGTACAACAACTGCTCTTCGGCAGTTGGGTAATGGAAACAATGCTCTTTCAAGTGTAAGTATTAGCAAGAATATGTTTGAAAGCATTATCCGGGACTTGCTCTTAGAGAGAACTGACCACATTGTTGAGCTCTATGAGGGGAGTGGCTCAAATTGGAGGTTGGCAAAGACTGGAACTCCTGGCAAGCTTGGCTGTTTTGAGGACATTCTATTTGCAAGCAATGACATGCAAGATACACCTGTGATAATAGCTGTGCAATATGTTACTCAGGATAATGGATACTTGGTGGGGATGGCATTTATTGATCTGACTAAGAGAACCTTAGGCATGACAGAGTTTATTGATGACAACCAATACACAAATCTGGAATCTGCCATGGTAGCTCTTGGATGCAGGGAATGTTTGTTACCGCTACACACTGGGAAGTCACCTGCTAATAAGCGCCTGCATGATGTGTTGGCGAGATGTAATGTACTCTTAACTGAAAAAAAGAAAGCTGAGTTCAATTCCAGGGATGTTGATCAAGACCTTAGTCGCCTAGTGAAAGGTCCTATAGAGTCATTGAGGGATTTAGTTGCAAGTTCAGATTGTGCCGCTGGTGCTATAGGGGCTCTCCTCTCTTATACAGATTTGCTCGCAGATGATAACAATTATGGGAGATTTAACATACAACGGTATAGCTTGGAGAGCTACATGCGGCTGGATGCTGCAGCACTACGAGCTTTAAATGTTCTTGAAAGTAAGACAGATGCAAACAAGAATTTCAGCTTGTTTGGACTGATGAATAGGACTTGTACTGCTGGTATGGGGAAGAGGTTGTTGAACAGGTGGCTCAAACAACCTCTATTAGATGTAGATGAGATCAAATGTAGGTTGGATCTGGTGCAGGTATTTGTTGAGGACACAGCATTGCGCCAGGATTTGAGACAGCATCTGAAAAGAATTACAGATATTGAACGACTTGTGCGGAAACTTGAGAAGAGGAGTGCTAATCTACAAGATATTGTAAAGCTGTATCAGACAAGCATACGGCTTCCTGTCATTAAAAGTTGTCTAGAACGATATGAAGGTGTATTTTCCTTATTAATCAGAGAGAGGTATACAGATGCCTTTGAATTTTGGACTGATGAGGAGCATTTGACAAAGTTTTCTGCTCTTGTTGAGGCTGCTGTTGATCTTGATCAACTTGACAATGGAGAATACATGATCTCAGCCGGTTATGATTCTAGCCTGTTGACGCTCAAGGATGAACGAGATGGAGTGGAAGAACAAATACGGAAGGTGCATCAGCAAGCTGCAAATGATCTGGATCTTCCTGTGGACAAGAGTTTGAAACTGGACAAGGGCACACAATTTGGACATGTATTCAGGATTACAAAGAAAGAGGAACCAAAAGTACGGAAGAAGTTGAATACACAGTATATTGTTTTAGAAACAAGAAAGGATGGTGTCAAATTCACAAATGCAAAACTCAAACGGCTCGGGGAGCAGTACATGAAGTTGGTTGAGGCATATAACAGTACTCAAAGAGAACTCGTTAGCCGGGTAGTACAAACGGCAGCAACATTTACTGAAGTTTTTGAAGTTCTTGCTAGTCTACTTTCTGAATTGGATGTTCTGCTGAGTTTTGCTGATCTAGCAATCTGTTGTCCCACTCCATATGTGAGACCAGATATCACTCCATCGGAGGATGGGGATATCATACTCGAAGGAAGCAGACATCCTTGTGTTGAGGCTCAGGATGGTGTAAATTTCATACCAAATGATTGCCGCCTTGTTAGGGGTAAAAGTTGGTTCCAAATTATCACCGGACCAAACATGGGTGGCAAATCAACCTTCATCAGGCAGGTTGGTGTTAATGTGCTTATGGCACAAGTTGGTTGTTTTGTTCCATGTGATCAAGCAACAATAAGTATTCGTGATTGTATATTTGCTCGTGTTGGCGCAGGAGATTGCCAACTTCGAGGAGTGTCCACGTTCATGTCAGAAATGTTGGAGACTGCAACCATCTTGAAGGGAGCAACCCATAAATCTCTAATAATAATTGATGAACTAGGACGCGGCACATCGACGTATGATGGATTTGGATTGGCTTGGGCGATCTGTGAATACCTTGTGCAAGTTACGAGGGCGCCTACACTCTTTGCAACTCACTTCCATGAACTTACAGCACTAGCTCATTCAGAGGAAACACCTGTCCATGGACCCCCCAAGGGCCCACCTGTGGGTATTGCAAATTATCACGTCAGTGCACATATTGATACAAATACTCAAAAGTTGACTATGCTGTACAAGGTTGCGGAAGGGCCATGTGACCAGAGTTTTGGAATTCATGTGGCTGAATTTGCCCAGTTTCCTGAAAGTGTGATTGCTCTTGCCAAGGAGAAAGCAGCTGAACTAGAAGACTTTTCTTCTGTCTCTGGAAATGTAGATCAAACAATGGAAGAGGTGGGAGTGAAACGGAAACGAGTGTGTGGACCTGATGATATGTCTAGAGGTGCAGCCCTAGCAAGGAATTTTTTGCAGGATTTTTCCTCATTACCTCTTGATCAAATGGATTATGAACAAGCTTTTCAAGCAGTCAATAAATTGAAGTCTGGCTTGGAGAAAGATGCTGTGAACAATTCTTGGCTACAACAGTTCTTCTAG___ATATCTTAAAACCCTTTGAATTCGCAATCAGTCCCTTCAAAAATGTGAACTATTGGCCTGGAGAATCACCTATCAATTTGGCAGTAACAGATGGCATATATAAACATGTCTAAATTTTGACAGAAGGCTTGGAAGCCCTTGCTAAATTCTGTTTTTGGATGGTGGGCTTGCTGAAGGATTTTGTGAGGTATTTATTGCAGATGGATATGTATAGATTTCAGCATATGTATATAAAAGCAAGTAGGTTGTTTCAATTTGTTCCTATGGCAAATGATCAGATCTTAGGTTTTGTTTTGCCATTATTAAACATTACTTTGGCGTTTATTAATGCTAATTACATATATGGGGGATGAACCCTCCACGAACAATTGATATGATGTTCTCATTTTGGTAAAACAAAGGTTCAACTTTTGCTTGAGATGGATTAGAAATATTCAAAC

Fln Alignment:

Contig1894___MEGEEALDSKLPELKLDAKQAQGFIAFYGKLSPNDQAVRFFDRRDYYTAHGENAIFIAKTYYRTTTALRQLGNGNNALSSVSISKNMFESIIRDLLLERTDHIVELYEGSGSNWRLAKTGTPGKLGCFEDILFASNDMQDTPVIIAVQYVTQDNGYLVGMAFIDLTKRTLGMTEFIDDNQYTNLESAMVALGCRECLLPLHTGKSPANKRLHDVLARCNVLLTEKKKAEFNSRDVDQDLSRLVKGPIESLRDLVASSDCAAGAIGALLSYTDLLADDNNYGRFNIQRYSLESYMRLDAAALRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVDEIKCRLDLVQVFVEDTALRQDLRQHLKRITDIERLVRKLEKRSANLQDIVKLYQTSIRLPVIKSCLERYEGVFSLLIRERYTDAFEFWTDEEHLTKFSALVEAAVDLDQLDNGEYMISAGYDSSLLTLKDERDGVEEQIRKVHQQAANDLDLPVDKSLKLDKGTQFGHVFRITKKEEPKVRKKLNTQYIVLETRKDGVKFTNAKLKRLGEQYMKLVEAYNSTQRELVSRVVQTAATFTEVFXXXXXXXXXXXXXXSFADLAICCPTPYVRPDITPSEDGDIILEGSRHPCVEAQDGVNFIPNDCRLVRGKSWFQIITGPNMGGKSTFIRQVGVNVLMAQVGCFVPCDQATISIRDCIFARVGAGDCQLRGVSTFMSEMLETATILKGATHKSLIIIDELGRGTSTYDGFGLAWAICEYLVQVTRAPTLFATHFHELTALAHSEETXXXXXXXXXXXGIANYHVSAHIDTNTQKLTMLYKVAEGPCDQSFGIHVAEFAQFPESVIXXXXXXXXXXEDFSSVSGNVDQTMEEVGVKRKRVCGPDDMSRGAALARNFLQDFSSLPLDQMDYEQAFQAVNKLKSGLEKDAVNNSWLQQF
O24617______________MEGNFEEQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYYHTTTALRQLGSGSNALSSVSISRNMFETIARDLLLERNDHTVELYEGSGSNWRLVKTGSPGNIGSFEDVLFANNEMQDTPVVVSIFPSFHDGRCVIGMAYVDLTRRVLGLAEFLDDSRFTNLESSLIALGAKECIFPAESGKSNECKSLYDSLERCAVMITERKKHEFKGRDLDSDLKRLVKGNIEPVRDLVSGFDLATPALGALLSFSELLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAGLRQDLRQHLKRISDVERLLRSLERRRGGLQHIIKLYQSTIRLPFIKTAMQQYTGEFASLISERYLKKLEALSDQDHLGKFIDLVECSVDLDQLENGEYMISSSYDTKLASLKDQKELLEQQIHELHKKTAIELDLQVDKALKLDKAAQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQSVVDDYRSCQKELVDRVVETVTSFSEVFEDLAGLLSEMDVLLSFADLAASCPTPYCRPEITSSDAGDIVLEGSRHPCVEAQDWVNFIPNDCRLMRGKSWFQIVTGPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFHELTALAQANS-----EVSGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSPSSMIINN--EESGKRKSREDDPDEVSRGAERAHKFLKEFAAIPLDKMELKDSLQRVREMKDELEKDAADCHWLRQF

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
2492		33		66	0.997452
2583		66		33	0.997452
2766		87	12		0.992554
2768		12		87	0.992554
2780	12			87	0.992554
2782			11	88	0.923564
2783	11			88	0.923564
2784	88	11			0.923564
2904		50	50		1.0
2941		75		25	0.996473
2942	75		25		0.996473
3011	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain