SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1892

Length: 1875 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1892

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoporin interacting component; Protein prenyltransferase [Medicago truncatula]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	uncharacterized protein at2g41620-like	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	transferase activity	GO:0016740	Molecular Function	80%
Blast2go	nuclear pore	GO:0005643	Cellular Component	80%
Blast2go	nucleolus	GO:0005730	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-
Sma3	Nucleoporin interacting component Nup93/Nic96	IPR007231	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9L1

Fln msg: your sequence is longer than subject: 303 - 243

Fln protein: MDAVSEIASIIRHYGSLYVRQGNLSLALEYYAQAAAAMGGGAPSWTGHSSVDQQRQRNLMLKQLLTELLLREGGIGLLLGPNGTGSEGALRRFLPDRQAQHHFLLEAARQCQDAGLYDKSVEIQKRVGAFAMALETVNSCLSEAIGALARGRADGDSRTAGLIYSGNDILEAYKFAGVASGQERDQIAEQQIALRQLEAILSVHKFARSGRYGDALKELSKLSFIPLDSRTPDRTADALQNVPPAVQACIPDLLRVALTCLDNVTDTDGTIRMLKTKIANFVANYLPRNWPQELYEKVAQML*

Protein Length: 304

Fln nts: CTCTGGGAACCGACAACAAATTGACCGGTTGCTTAGAGACCTTCCAATGCTGTTCAGTACTATTGAAGATTTCTTGTGGTTCAAACTAGCTGTTGTTCGTGACATTGGTGGTGCATCTTCATCTGTTACTCAGTAGTCCGTGATGGCCTGTCACCATACAGTCTAGAAGATCTTCAAAATTACTTGAACAAATTTGAGCCTGCATACTACACTAAGAATGGGAAAGATCCATTGGTTTACCCCTATGTGCTTCTTTTGAGTGGTCAGTTGCAGTTAGCTGTTCAACACCTCACAAAAGAAGTTAGCAGTGAAGGGTATAACATAGATGCTGTACATATTTCTATTGCACTGGTAGACCATGGAGTCTTCTCAGAGGGTGTTGGTAGTGGGCACAAGCTTGGAGTA_-_ATGGATGCTGTTTCAGAGATTGCAAGCATAATTCGACACTATGGTTCATTATATGTACGGCAAGGGAATTTGTCATTAGCATTGGAATACTATGCACAAGCTGCTGCTGCCATGGGAGGTGGTGCTCCTTCATGGACTGGTCACAGCAGTGTTGATCAGCAACGACAAAGGAACTTGATGTTGAAGCAACTTCTGACTGAGCTTTTGTTACGGGAAGGGGGAATTGGCCTTTTGCTTGGTCCCAATGGTACTGGATCAGAAGGTGCACTGAGAAGATTTTTGCCAGACAGGCAAGCTCAACATCATTTCTTGCTTGAAGCTGCTCGCCAGTGTCAAGATGCTGGTCTTTATGATAAGTCCGTTGAAATTCAAAAGCGGGTGGGTGCATTTGCAATGGCTTTGGAGACAGTAAACAGCTGCCTTTCAGAAGCCATTGGTGCACTGGCCCGAGGTCGGGCTGATGGAGATAGCAGGACTGCTGGTTTAATTTATTCGGGCAATGATATCTTAGAAGCATACAAATTTGCTGGAGTAGCAAGTGGACAAGAAAGGGACCAAATTGCAGAGCAACAAATAGCACTGCGGCAACTGGAAGCTATTTTATCAGTTCACAAATTTGCTAGGAGTGGTCGATATGGTGATGCTCTAAAGGAACTATCTAAACTCTCTTTTATTCCTTTGGATTCAAGAACCCCAGACAGAACTGCAGATGCACTTCAAAATGTTCCTCCAGCTGTTCAAGCATGTATTCCGGATCTCCTTAGGGTTGCTCTCACCTGCCTGGACAATGTTACAGATACAGATGGTACAATTCGTATGCTAAAGACTAAGATTGCAAACTTTGTGGCGAATTATTTACCAAGAAACTGGCCGCAGGAATTATACGAGAAGGTTGCTCAGATGCTCTGA___TTACCTTAGCAAGAGCAAGTTGTATTCTATAAATATACCTCATTTTTGCGTTTATTTCAATTTGGTGAGCTGTATTGAAGATATTTCCACGCAACTAATTCTGACAGTTCAAATTTCTATTACTATATTTTTAGTTTATCTTACTCCGTTGTGACGGTATTACGCAAGATAATGATAGATCAATATCTTCTATATTTTCTTGCTGCAATGGAGTTAAGGCCCTTAGGCATCCCTGCCAAGTTATGCTCCTGTGCTGTTTGTAAGCGGGCATGGACATATTGTTATCGCTGATTGAGTTTTAGACAATACAACTTACCAGTTTTGTAGGACAGCTTCTTAACGATGAACGCAATTCCAAATGTTAGGCCACAGTGCCCTCTCTCTTAGCAGTTTCATGACTTAGGATGTGATATCGTTCTTGAAGTGTTCACATGGAAAAAGAATATGGCTAAATTTCACGGGAACAGTAATTTTGTGCCTGTGATATGGAGCAGATAGTGGCATTTCTGTTTTTTTGGTAAGGTTCGAGGCTTCTCCGATTGTAAGAAAGTTGAGCCACGT

Fln Alignment:

Contig1892___PNGTGSEGALRRFLPDRQAQHHFLLEAARQCQDAGLYDKSVEIQKRVGAFAMALETVNSCLSEAIGALARGRADGDSRTAGLIYSGNDILEAYKFAGVASGQERDQIAEQQIALRQLEAILSVHKFARSGRYGDALKELSKLSFIPLDSRTPDRTADALQNVPPAVQACIPDLLRVALTCLDNVTDTDGTIRMLKTKIANFVANYLPRNWPQELYEKVAQML
D5A9L1______________PNGTGSEGGLRRFLPERQAQHHFLLEAARQCQDAGLYDKSVEIQKRVGAFAMALETVNSCLSEAIGSLARGRADGDSRTAGLIYSGNDILEAYKFAGVTSAQERDQIAEQQTALRQLEAILSVHKFARSGRYGDALKELSKLSFIPLDSRTPDRTADALQNLPPAVQACIPDLLKVALTCLDNVTDTDGTIRMLKTKIANFVANYLPRNWPQELYEKVAQML

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
748		75		25	0.996473
755		25		75	0.996473
900		12		87	0.992554
906	75			25	1.0
907	75			25	1.0
908		12		87	0.992554
910	75	25			1.0
981	80			20	0.995493
995	80			20	0.995493
996		80	20		0.995493
997			20	80	0.995493
1190			75	25	0.996473
1191		25	75		0.996473
1192	75		25		0.996473
1279		70		30	1.0
1285			70	30	1.0
1286		30	70		1.0
1317		23	76		1.0
1318	76		23		1.0
1320			23	76	1.0
1326	84		15		0.999986
1329	76			7	0.999983
1330	76		7	15	0.999983
1332	76	7			0.999983
1333	7		76	15	0.999983
1336	76	23			1.0
1337	7		76	15	0.999983
1338		15		84	0.999986
1339	15			84	0.999986
1363		50		50	1.0
1366			90	10	0.90298
1583		88		11	0.923564
1594	81	18			0.999994
1631			14	85	0.993533
1683			83	16	0.994512
1773	50			50	1.0
1786	33			66	0.997452
1787	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain