SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1881

Length: 1980 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene1881
CGTCGTGACCTTGGCTGTCACTCATTTACATACTTCTACGATGCAGACATTGGTAATTATTACTATGGGCAAGGCCACCCAATGAAGCCACACCGCATGAGAATGGCCCACAACTTGATTGTCCACTATGGCCTCCACCAGAGGATGGAAGTTTGCAGGCCTCATCTAGCACAGAGCAAGGACATCCGTGCCTTTCATACTGATGATTACATACATTTCTTGAGTAGTGTAGCACCAGACACTCAGCAGGAGCAGCTGAGGCAGTTGAAGAGGTTCAATGTGGGGGAGGACTGCCCTGTGTTTGATGGGCTTTTCAATTTTTGCCAGTCTTCTGCAGGAGGCTCAATTGGGGCAGCCCTTAAACTCAATAGGAAGGATGCAGACATTGCCATCAACTGGGCGGGGGGCCTCCACCATGCCAAGAAGTGCGAGGCGTCGGGTTTCTGCTATGTCAATGATATTGTGCTTGGCATCCTGGAATTGCTAAAGGTCCATCAGCGTGTACTTTATATTGATATTGATATTCATCATGGTGATGGGGTTGAAGAAGCCTTCTACACTACAGACCGTGTGATGACTGTATCTTTTCACAAATTTGGGGATTACTTTCCAGGCACAGGTCATATTAAAGATGTAGGATATGGGAAAGGGAAGTACTATGCCTTGAATGTTCCTTTGAATGATGGAATTGATGATGAGAGCTACAAGCACCTTTTCAGGCCCATTATCCAGAAGGTAATGGAAGTCTATCAGCCAGAAGCAGTTGTTCTACAATGTGGAGCAGACTCACTCTCAGGGGACAGGTTAGGGTGCTTCAATTTGTCAGTCAAGGGACACGCAGATTGTGTTCGTTTTGTTCGGTCATTTAATATACCACTTATGCTGGTTGGTGGTGGTGGTTACACTATTCGTAATGTGGCTCGCTGCTGGTGCTACGAGACTGCTGTTGCTGTAGGTGTTGAACCCCAAGATAAATTGCCTTATAATGAGTATTACGAATATTTTGGGCCAGACTACACCCTCTATGTAGCCCCTAGCAATATGGAGAACCTGAACACAGAAAAAGATTTGGAGAAAATGAGAAACGTGTTGCTAGAACAATTGAGTAAAATACAACATACACCAAGTGTACCCTTTCAGGAAAGGCCCCCTGATACAGAATTTAATGATGAGGAGGAAGAGGACATGGAAAAACGCTCAAAATGCCGTATCTGGGATGGGGAGTACGTTGGTTCAGAATCTGAGGAAGATGGAAAGCCTCCAATATTTGATGCAGATACTTATGAGAGATCTGTTCTCAAGCATGAAAACAAAAGGTTAGTGCCTGTTTCAAATGTTGAACCTCTGAAGAGAATAAAACAAGAGGAAGATGGAGCGGCTGACCAAGGCCGTCAATCATCTTAATTTCACTGCCATTTCCTTCAGATGGTCACTTCTCTCATGTTCATTCAATCATTTTAATTTTCATTCTAATATGGTTCATGCCCTATATGAAGAAAGAAGGCCTGTGAATTTCTTTTAATTTTGATCCTGGCTTTAAGGCTCATTTTAGAGAAGGAACTTTCATGCACTACATGGCTTAAAGATATTGATTTTGTGCTGTGAAAGCAGAACGAAAATGAAAATGGCACTGCCACCTGGACATTTGTCCAATCTGCATGAGCACACTGAGAGGGAAAAGCTGAAGCAGAAGCAGCTTTGACCAGTATTTAGTGTTTTGTATACAATTCTTGTTTCAGTGAATGCTGCTCCCCCTTCTCGATTACCAACCTGTACTTAAACATTGTTGCTATCAGAAGAGTATTATTTTTCAAGGAATGCAAGATAAATGTATAAAATGGGGTTATATGAAAGAGCCTTTTTCTGCTTCTGCTTTATGTTACAAACGGATGGAAATTGTTCCGTATTACAGTGGATATTGTAGATACTGAACTTGTTTTAAATTATAATGACGGATCTGAATATTGTAGTTTTCATGTG

Ace file of the UniGene sp_v2.0_unigene1881

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone deacetylase (Fragment) n=2 Tax=Malpighiales RepID=B9IEX4_POPTR	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	histone deacetylase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone deacetylase.	EC:3.5.1.98	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	87%
Blast2go	seed maturation	GO:0010431	Biological Process	87%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	histone deacetylation	GO:0016575	Biological Process	87%
Blast2go	response to salt stress	GO:0009651	Biological Process	87%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	87%
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	87%
Blast2go	posttranscriptional gene silencing	GO:0016441	Biological Process	87%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	87%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	87%
Blast2go	histone acetylation	GO:0016573	Biological Process	87%
Blast2go	NAD-dependent histone deacetylase activity (H3-K9 specific)	GO:0046969	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	NAD-dependent histone deacetylase activity (H3-K14 specific)	GO:0032041	Molecular Function	87%
Blast2go	NAD-dependent histone deacetylase activity (H4-K16 specific)	GO:0046970	Molecular Function	87%
Blast2go	histone deacetylase activity (H4-K16 specific)	GO:0034739	Molecular Function	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%
Blast2go	regulation of multicellular organismal development	GO:2000026	Biological Process	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Histone deacetylase superfamily	IPR000286	-	0.0	-
Sma3	Histone deacetylase	IPR003084	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP03

Fln msg: your sequence is longer than subject: 441 - 102

Fln protein: MKPHRMRMAHNLIVHYGLHQRMEVCRPHLAQSKDIRAFHTDDYIHFLSSVAPDTQQEQLRQLKRFNVGEDCPVFDGLFNFCQSSAGGSIGAALKLNRKDADIAINWAGGLHHAKKCEASGFCYVNDIVLGILELLKVHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGHIKDVGYGKGKYYALNVPLNDGIDDESYKHLFRPIIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCVRFVRSFNIPLMLVGGGGYTIRNVARCWCYETAVAVGVEPQDKLPYNEYYEYFGPDYTLYVAPSNMENLNTEKDLEKMRNVLLEQLSKIQHTPSVPFQERPPDTEFNDEEEEDMEKRSKCRIWDGEYVGSESEEDGKPPIFDADTYERSVLKHENKRLVPVSNVEPLKRIKQEEDGAADQGRQSS*

Protein Length: 442

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTACATACTTCTACGATGCAGACATTGGTAATTATTACTATGGGCAAGGCCACCCA_-_ATGAAGCCACACCGCATGAGAATGGCCCACAACTTGATTGTCCACTATGGCCTCCACCAGAGGATGGAAGTTTGCAGGCCTCATCTAGCACAGAGCAAGGACATCCGTGCCTTTCATACTGATGATTACATACATTTCTTGAGTAGTGTAGCACCAGACACTCAGCAGGAGCAGCTGAGGCAGTTGAAGAGGTTCAATGTGGGGGAGGACTGCCCTGTGTTTGATGGGCTTTTCAATTTTTGCCAGTCTTCTGCAGGAGGCTCAATTGGGGCAGCCCTTAAACTCAATAGGAAGGATGCAGACATTGCCATCAACTGGGCGGGGGGCCTCCACCATGCCAAGAAGTGCGAGGCGTCGGGTTTCTGCTATGTCAATGATATTGTGCTTGGCATCCTGGAATTGCTAAAGGTCCATCAGCGTGTACTTTATATTGATATTGATATTCATCATGGTGATGGGGTTGAAGAAGCCTTCTACACTACAGACCGTGTGATGACTGTATCTTTTCACAAATTTGGGGATTACTTTCCAGGCACAGGTCATATTAAAGATGTAGGATATGGGAAAGGGAAGTACTATGCCTTGAATGTTCCTTTGAATGATGGAATTGATGATGAGAGCTACAAGCACCTTTTCAGGCCCATTATCCAGAAGGTAATGGAAGTCTATCAGCCAGAAGCAGTTGTTCTACAATGTGGAGCAGACTCACTCTCAGGGGACAGGTTAGGGTGCTTCAATTTGTCAGTCAAGGGACACGCAGATTGTGTTCGTTTTGTTCGGTCATTTAATATACCACTTATGCTGGTTGGTGGTGGTGGTTACACTATTCGTAATGTGGCTCGCTGCTGGTGCTACGAGACTGCTGTTGCTGTAGGTGTTGAACCCCAAGATAAATTGCCTTATAATGAGTATTACGAATATTTTGGGCCAGACTACACCCTCTATGTAGCCCCTAGCAATATGGAGAACCTGAACACAGAAAAAGATTTGGAGAAAATGAGAAACGTGTTGCTAGAACAATTGAGTAAAATACAACATACACCAAGTGTACCCTTTCAGGAAAGGCCCCCTGATACAGAATTTAATGATGAGGAGGAAGAGGACATGGAAAAACGCTCAAAATGCCGTATCTGGGATGGGGAGTACGTTGGTTCAGAATCTGAGGAAGATGGAAAGCCTCCAATATTTGATGCAGATACTTATGAGAGATCTGTTCTCAAGCATGAAAACAAAAGGTTAGTGCCTGTTTCAAATGTTGAACCTCTGAAGAGAATAAAACAAGAGGAAGATGGAGCGGCTGACCAAGGCCGTCAATCATCTTAA___TTTCACTGCCATTTCCTTCAGATGGTCACTTCTCTCATGTTCATTCAATCATTTTAATTTTCATTCTAATATGGTTCATGCCCTATATGAAGAAAGAAGGCCTGTGAATTTCTTTTAATTTTGATCCTGGCTTTAAGGCTCATTTTAGAGAAGGAACTTTCATGCACTACATGGCTTAAAGATATTGATTTTGTGCTGTGAAAGCAGAACGAAAATGAAAATGGCACTGCCACCTGGACATTTGTCCAATCTGCATGAGCACACTGAGAGGGAAAAGCTGAAGCAGAAGCAGCTTTGACCAGTATTTAGTGTTTTGTATACAATTCTTGTTTCAGTGAATGCTGCTCCCCCTTCTCGATTACCAACCTGTACTTAAACATTGTTGCTATCAGAAGAGTATTATTTTTCAAGGAATGCAAGATAAATGTATAAAATGGGGTTATATGAAAGAGCCTTTTTCTGCTTCTGCTTTATGTTACAAACGGATGGAAATTGTTCCGTATTACAGTGGATATTGTAGATACTGAACTTGTTTTAAATTATAATGACGGATCTGAATATTGTAGTTTTCATGTG

Fln Alignment:

Contig1881___MRNVLLEQLSKIQHTPSVPFQERPPXXXXXXXXXXXXXKRSKCRIWDGEYVGSESEEDGKPPIFDADTYERSVLKHENKRLVPVSNVEPLKRIKQEEDGAA
B8LP03______________MRNVLLEQLSRIQHIPSVPFQERPPDTEFHDEEEEDMEKRSKCRIWDGEYFGSESEEDGKPPRCDADTYVRSVLKHENKRLVPVSNVEPLKRIKQEEDGEA

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1199		20		80	0.995493
1285		22		77	0.999999
1291	88		11		0.923564
1384	33			66	0.997452
1385		33		66	0.997452
1386		33		66	0.997452
1387	66			33	0.997452
1388	66			33	0.997452
1391	33		66		0.997452
1395	66	33			0.997452
1410			33	66	1.0
1414	12			87	0.992554
1415		12	75		0.975346
1416	12	87			0.992554
1417	12	87			0.992554
1576			8	91	0.999807
1577	91			8	0.999807
1579	91		8		0.999807
1582		8	91		0.999807
1586	91		8		0.999807
1587	91		8		0.999807
1588	91	8			0.999807

SSRs (tot: 1)

Start position	End position	Sequence	Length
888	900	TGG TGG TGG TGG T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain