SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1879

Length: 3312 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1879
AGTAAATGTTAGAATTTGGGTGGAGCAGCCGGAACGAAGAGTAGGAGGCGCGGGAGGATTATGCAGGCGCAGAATGCGTGCGGAGGCCAGTTTTGCGTCGAGACAAAACCTGCACTGGGTCATCTCGAAAGTGGTTTCGAACGGTGCAGATGAGGATGAGTACTTGGCATGCCCGTGCAGGGTCGAAACCGGTGGTATTCTGTGGCACTGATTGGACGACAGCCACCTCTACTATGCCTGCTGCTGCGGTTCACAGTCAACGTTTCGGGTATTTTCCGGCTTTCTTCAGCTGAAAATGAAGGTATGAATGCCACAGAATAAGCATGTCAGTGTGCATGGTTTTAGGTAGGGTTTTGTGAAGAATTGAGCGCTGTATTCAGGCGGAGATGGAGACCAGGAGATCGGATTCTGGTGCTTCTTTGCCTCCCCGCAAGAGGCTACTCGCAGGGCTGAAACAGAACGGATGGTTTTGTTCTGATTCGGAAAAGGATTCGGAGAACGGGAGCCGGGACAAGGCAAACGGGGAAGCGGATTCTCCCGGCTGTATCAGCTGCGGTGCCACTGGGGTTCCTGCTCTGGAGAGCGTGAAGAACGGCAAAAGGTTTGTGTTTGTTTGTAAATCGTGTAATTGTTTGCTCGATTCTGGTGGCATCTGTTGTTGTTGTTTTCGCAAAATATCGGACGATAGGGGTTTGTCAGTTGTTGCCCTTTCTTGTTGCAAATGCCGGCGTCGCGTGCACTGTGATTGTGTTCCCAAGGATAGTGGAGATGAAGATGATTGTTCTGATTCGAAAATTTTTGTCTGCATGGATTGTTCGCCCATTAAACGGCTTCGTGATGGATTCAATGGGGACAAAGTTAGGTTTGAGTCCAGGAGGGAGTTAGGGTTTGAAAACGGTGGTAAGGAAAATGGTTGCATGAAACAGATTGAGCTAGGGTTAGCAGCTAGCTGCAATTCAGATGTTATACCTTGGACATTCCCTGCAGCAGATACTGCTGCAAGTTCTGTAGATAAAACCTCAGGGTGTTCTGTACATAAGCTTGTAGGTAAACTGTCGTTGATCAATAGTGAGTCCGGTGAAGCATGTTGTTCCTCTGAGCTGCAAACTGTAGATGGCTCTAGGGAGAAGAGACTACCGGGTAATTCTGGTTCGGGAAAGAATAATCCTTTGCTATCTGGGAAATCTTCCCTTTTGTCTGAGGATTTGGTGGTCGAAGCCAAGGCTGCAGCGAAGAGGGCAGCAGACGCTCTAGCTGTGGCCAAAGCTGAAGCTTTCAGAAAAGCGGCAGAAGCAGTGAAGGCAGCCACTGCTGCAAAGGATGCTCTGAATTTAGCTGCCCTCGCTGCGCAGGAGGAGAGGGAGACCAGTATGCATAAAGTGAGTTCGGCAAAGCATGCAACAAGTAAGGTCTTGGACAGACATAGTAAAATGGAGGCGTTGGAAATGAAGGGAGAGGTGACAGCAGTATCCTCTGTTGTCGATGACGAAGAATTGGCACGCCAATTGCATCGTGCAATCAATAGCTCGCCGAGGATTTCTCGGAATTCAGGTTCTTTGGGCGGGAGAGTCTTGGGTAAGCCATTAGATTCTAATTGTTATGGGTCACGTCTTCATAGTCCAAGTCTAGCTAAACAGCAGATTCGTGTGAGGCAGCCTTGTTATAGGGAAACTAAGAAGCAGGAGCGAGAATTCCGGAAAAATTCAGTAAGTGCCAATCCGGGAAGACTGGCTCAACAGACAGAGCCTGGAAACCAGAGTGCATGTGAGAAGTTTGGATCTAGTGCTATTGATAAACTCTTCCAAACTCTAGAGCACTCAGAGGAAGAATCATCAGTGGGTCTTCTTGTTCTCAATCAGGATCATTCAGTTGGTAAGCCAAATGTAAATGTGGAAACTGAGTTGAGAGATTCAAGTGATGGTGGGTTGACCTCTCAAGTTCCTTACGTTGACTATGACGAAAAGGCCTCCAATGCGAGTCTGGCTCTGAAGGAACTTGGAGTCTGTAAATATAGTATTGCATTTGCGAAGGATGGAAATTGCATGCCTCTGGAATCAGAAGTGGGCAATTTGGAGAAACTGGCAGAGACAGTTGCCGTAGTCATGGAAGCAGAGAACTCTAGATGTGAAGAGGACAAGCTGGAGGCATGCATAAAAGAAGAAGTGAGCTGTTCCACTAAATTCATTGAACTCTCTTCAGAGAGGCATCATTTGGATCCTGGAGATGCATCTAGTCAGAGAAAAGGGGCATTTAAACGGAAAAACACGTCTTTAGGTTTAGCGAAAACTAATGAATGTAAAACAAAGCTGTCCAACAGTAGTAGGGCACCAGTCCAAGCAGGAATTTACCAGGATAATATTGCATTTGAAACCAAGTGTTGTCCCTTGACTGATGAAAGCTCAATGAGTTCTCATGTGAGACAGTCAAACATTAGAAATAACACTGAAAGGAGAACAAAGTCTATTTCGGGAGACTTTCCTCAGGAAAGTCAAGGATCAGCTCGTGCAAGATCAACTTGGCATCAGAGTCTCCGAAAACCATCTCAGAGTTCTGCAGGCAGTGTGAACTTAGCACCTTTTCAATCTGCTTCTCCAATGCCCTTGCAATCTCCTACGTTTGCAAGTGGACCATCACGGAAGCACTCATAATCAAGTGCAGACAGGATTATGTTTGCTGCATCTTCACGAGATCATTTGGATTCTTCAGCATTGGATCGCTAGAGGCATATCATCAGAACCTGAGGTCTGTATTTATGCCTCAGAACTTTCATACCTTGTGTATTGTCGGTAATAATGCTTCTTCCCACCCTGTAAGCAGTTTCTAGGGAATGTGCAGTGATTTGATTTTCTAGCCATAAATATGAGCAAGAACTCCTTAGATTGGCTACTTCAAGTACATGTGCAAGTTTCTGCAAGAAATAGGTTTATGCATTGCTTGCTGTCTGCCTTAACTGGAAAGTAACATTTACTCTTGTTATGTAAAACTCAAGAAGTTTTTGAAGCCTCCTGCTGGAATTGTGCTGCATAAGTGGCTTCTCTGTTTGTGTAATTCCACTTCATCCATCAATCATCATTTCTGATGCCCGTGTACATATTTACTGGGGGTCTGTTCGAGTTTATGGTGGTCAGGGGATGGCCTCACCATTATTTACTCTTTCCTTTTACAGCATCTTTAGACATTTACCTAAATCATTTGTAAATCCATTTGCCAGGTAATTTTTCCTTCTAAAATATTGTGGTTTCTTGTTGATTTTATATCAGCGATGGGCTCTGCTTGGTTACAATAGCTTGCTATTAACAGGGTAACTTGATT

Ace file of the UniGene sp_v2.0_unigene1879 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	unknown [Picea sitchensis]	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	EGF-like region, conserved site	IPR013032	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKE6

Fln msg:

Fln protein: METRRSDSGASLPPRKRLLAGLKQNGWFCSDSEKDSENGSRDKANGEADSPGCISCGATGVPALESVKNGKRFVFVCKSCNCLLDSGGICCCCFRKISDDRGLSVVALSCCKCRRRVHCDCVPKDSGDEDDCSDSKIFVCMDCSPIKRLRDGFNGDKVRFESRRELGFENGGKENGCMKQIELGLAASCNSDVIPWTFPAADTAASSVDKTSGCSVHKLVGKLSLINSESGEACCSSELQTVDGSREKRLPGNSGSGKNNPLLSGKSSLLSEDLVVEAKAAAKRAADALAVAKAEAFRKAAEAVKAATAAKDALNLAALAAQEERETSMHKVSSAKHATSKVLDRHSKMEALEMKGEVTAVSSVVDDEELARQLHRAINSSPRISRNSGSLGGRVLGKPLDSNCYGSRLHSPSLAKQQIRVRQPCYRETKKQEREFRKNSVSANPGRLAQQTEPGNQSACEKFGSSAIDKLFQTLEHSEEESSVGLLVLNQDHSVGKPNVNVETELRDSSDGGLTSQVPYVDYDEKASNASLALKELGVCKYSIAFAKDGNCMPLESEVGNLEKLAETVAVVMEAENSRCEEDKLEACIKEEVSCSTKFIELSSERHHLDPGDASSQRKGAFKRKNTSLGLAKTNECKTKLSNSSRAPVQAGIYQDNIAFETKCCPLTDESSMSSHVRQSNIRNNTERRTKSISGDFPQESQGSARARSTWHQSLRKPSQSSAGSVNLAPFQSASPMPLQSPTFASGPSRKHS*

Protein Length: 755

Fln nts: AGTAAATGTTAGAATTTGGGTGGAGCAGCCGGAACGAAGAGTAGGAGGCGCGGGAGGATTATGCAGGCGCAGAATGCGTGCGGAGGCCAGTTTTGCGTCGAGACAAAACCTGCACTGGGTCATCTCGAAAGTGGTTTCGAACGGTGCAGATGAGGATGAGTACTTGGCATGCCCGTGCAGGGTCGAAACCGGTGGTATTCTGTGGCACTGATTGGACGACAGCCACCTCTACTATGCCTGCTGCTGCGGTTCACAGTCAACGTTTCGGGTATTTTCCGGCTTTCTTCAGCTGAAAATGAAGGTATGAATGCCACAGAATAAGCATGTCAGTGTGCATGGTTTTAGGTAGGGTTTTGTGAAGAATTGAGCGCTGTATTCAGGCGGAG_-_ATGGAGACCAGGAGATCGGATTCTGGTGCTTCTTTGCCTCCCCGCAAGAGGCTACTCGCAGGGCTGAAACAGAACGGATGGTTTTGTTCTGATTCGGAAAAGGATTCGGAGAACGGGAGCCGGGACAAGGCAAACGGGGAAGCGGATTCTCCCGGCTGTATCAGCTGCGGTGCCACTGGGGTTCCTGCTCTGGAGAGCGTGAAGAACGGCAAAAGGTTTGTGTTTGTTTGTAAATCGTGTAATTGTTTGCTCGATTCTGGTGGCATCTGTTGTTGTTGTTTTCGCAAAATATCGGACGATAGGGGTTTGTCAGTTGTTGCCCTTTCTTGTTGCAAATGCCGGCGTCGCGTGCACTGTGATTGTGTTCCCAAGGATAGTGGAGATGAAGATGATTGTTCTGATTCGAAAATTTTTGTCTGCATGGATTGTTCGCCCATTAAACGGCTTCGTGATGGATTCAATGGGGACAAAGTTAGGTTTGAGTCCAGGAGGGAGTTAGGGTTTGAAAACGGTGGTAAGGAAAATGGTTGCATGAAACAGATTGAGCTAGGGTTAGCAGCTAGCTGCAATTCAGATGTTATACCTTGGACATTCCCTGCAGCAGATACTGCTGCAAGTTCTGTAGATAAAACCTCAGGGTGTTCTGTACATAAGCTTGTAGGTAAACTGTCGTTGATCAATAGTGAGTCCGGTGAAGCATGTTGTTCCTCTGAGCTGCAAACTGTAGATGGCTCTAGGGAGAAGAGACTACCGGGTAATTCTGGTTCGGGAAAGAATAATCCTTTGCTATCTGGGAAATCTTCCCTTTTGTCTGAGGATTTGGTGGTCGAAGCCAAGGCTGCAGCGAAGAGGGCAGCAGACGCTCTAGCTGTGGCCAAAGCTGAAGCTTTCAGAAAAGCGGCAGAAGCAGTGAAGGCAGCCACTGCTGCAAAGGATGCTCTGAATTTAGCTGCCCTCGCTGCGCAGGAGGAGAGGGAGACCAGTATGCATAAAGTGAGTTCGGCAAAGCATGCAACAAGTAAGGTCTTGGACAGACATAGTAAAATGGAGGCGTTGGAAATGAAGGGAGAGGTGACAGCAGTATCCTCTGTTGTCGATGACGAAGAATTGGCACGCCAATTGCATCGTGCAATCAATAGCTCGCCGAGGATTTCTCGGAATTCAGGTTCTTTGGGCGGGAGAGTCTTGGGTAAGCCATTAGATTCTAATTGTTATGGGTCACGTCTTCATAGTCCAAGTCTAGCTAAACAGCAGATTCGTGTGAGGCAGCCTTGTTATAGGGAAACTAAGAAGCAGGAGCGAGAATTCCGGAAAAATTCAGTAAGTGCCAATCCGGGAAGACTGGCTCAACAGACAGAGCCTGGAAACCAGAGTGCATGTGAGAAGTTTGGATCTAGTGCTATTGATAAACTCTTCCAAACTCTAGAGCACTCAGAGGAAGAATCATCAGTGGGTCTTCTTGTTCTCAATCAGGATCATTCAGTTGGTAAGCCAAATGTAAATGTGGAAACTGAGTTGAGAGATTCAAGTGATGGTGGGTTGACCTCTCAAGTTCCTTACGTTGACTATGACGAAAAGGCCTCCAATGCGAGTCTGGCTCTGAAGGAACTTGGAGTCTGTAAATATAGTATTGCATTTGCGAAGGATGGAAATTGCATGCCTCTGGAATCAGAAGTGGGCAATTTGGAGAAACTGGCAGAGACAGTTGCCGTAGTCATGGAAGCAGAGAACTCTAGATGTGAAGAGGACAAGCTGGAGGCATGCATAAAAGAAGAAGTGAGCTGTTCCACTAAATTCATTGAACTCTCTTCAGAGAGGCATCATTTGGATCCTGGAGATGCATCTAGTCAGAGAAAAGGGGCATTTAAACGGAAAAACACGTCTTTAGGTTTAGCGAAAACTAATGAATGTAAAACAAAGCTGTCCAACAGTAGTAGGGCACCAGTCCAAGCAGGAATTTACCAGGATAATATTGCATTTGAAACCAAGTGTTGTCCCTTGACTGATGAAAGCTCAATGAGTTCTCATGTGAGACAGTCAAACATTAGAAATAACACTGAAAGGAGAACAAAGTCTATTTCGGGAGACTTTCCTCAGGAAAGTCAAGGATCAGCTCGTGCAAGATCAACTTGGCATCAGAGTCTCCGAAAACCATCTCAGAGTTCTGCAGGCAGTGTGAACTTAGCACCTTTTCAATCTGCTTCTCCAATGCCCTTGCAATCTCCTACGTTTGCAAGTGGACCATCACGGAAGCACTCATAA___TCAAGTGCAGACAGGATTATGTTTGCTGCATCTTCACGAGATCATTTGGATTCTTCAGCATTGGATCGCTAGAGGCATATCATCAGAACCTGAGGTCTGTATTTATGCCTCAGAACTTTCATACCTTGTGTATTGTCGGTAATAATGCTTCTTCCCACCCTGTAAGCAGTTTCTAGGGAATGTGCAGTGATTTGATTTTCTAGCCATAAATATGAGCAAGAACTCCTTAGATTGGCTACTTCAAGTACATGTGCAAGTTTCTGCAAGAAATAGGTTTATGCATTGCTTGCTGTCTGCCTTAACTGGAAAGTAACATTTACTCTTGTTATGTAAAACTCAAGAAGTTTTTGAAGCCTCCTGCTGGAATTGTGCTGCATAAGTGGCTTCTCTGTTTGTGTAATTCCACTTCATCCATCAATCATCATTTCTGATGCCCGTGTACATATTTACTGGGGGTCTGTTCGAGTTTATGGTGGTCAGGGGATGGCCTCACCATTATTTACTCTTTCCTTTTACAGCATCTTTAGACATTTACCTAAATCATTTGTAAATCCATTTGCCAGGTAATTTTTCCTTCTAAAATATTGTGGTTTCTTGTTGATTTTATATCAGCGATGGGCTCTGCTTGGTTACAATAGCTTGCTATTAACAGGGTAACTTGATT

Fln Alignment:

Contig1879___METRRSDSGASLPPRKRLLAGLKQNGWFCSDSEKDSENGSRDKANGEADSPGCISCGATGVPALESVKNGKRFVFVCKSCNCLLDSGGICCCCFRKISDDRGLSVVALSCCKCRRRVHCDCVPKDSGDEDDCSDSKIFVCMDCSPIKRLRDGFNGDKVRFESRRELGFENGGKENGCMKQIELGLAASCNSDVIPWTFPA--ADTAASSVDKTSGCSVHKLVGKLSLINSESGEACCSSELQTVDGSREKRLPGNSGSGKNNPLLSGKSSLLSEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERE--TSMHKVSSAKHATSKVLDRHSKMEALEMKGEVTAVSSVVDDEELARQLHRAINSSPRISRNSGSLGGRVLGKPLDSNCYGSRLHSPSLAKQQIRVRQPCYRETKKQEREFRKNSVSANPGRLAQQTEPGNQSACEKFGSSAIDKLFQTLEHSEEESSVGLLVLNQDHSVGKPNVNVETELRDSSDGGLTSQVPYVDYDEKASNASLALKELGVCKYSIAFAKDGNCMPLESEVGNLEKLAETVAVVMEAENSRCEEDKLEACIKEEVSCSTKFIELSSERHHLDPGDASSQRKGAFKRKNTSLGLAKTNECKTKLSNSSRAPVQAGIYQDNIAFETKCCPLTDESSMSSHVRQSNIRNNTERRTKSISGDFPQESQGSARARSTWHQSLRKPSQSSAGSVNLAPFQSASPMPLQSPTFASGPSRKHS
B8LKE6______________METRRSDAGAFLPPRKRLLAGLKQNGWFCSDSEKNSENRKPEKANGEVDSPVCVSCGARGGPTLESVKNGKRFVSVCKSCNCLLNSGGICCCCFRKISDDKGLLVVALSCCKCRHRVHCDCVSKNIGEEDVCSDSKSFVCVDCSPLKGIRDACGG-KVTFESGRELGFENCGKENGCTRESEPGLAASCNSDVKPRTLSVSVADTAVSSVDKTSGSSVYKLLGKQSLINSESGEACCCSELKTVDGSREKRLPSNSGSGKNNPLLSGKSPLLSEFFVAEAKAAAKRAAEALAIAKAEAFRKAAEAAKAVTAAKDALNLAALAAQEESEIRTVMHKISSAKPATNKVSDRQSKMEELEMKGEVTAVSSVVDDEELARQLHRAINSSPRISRNSVSLGGRVLGKPLDSNCSRARPQSRSLPKQQIRLRPPFHRETKKQEREFRKKSESANPGKLAQQTEPGNQSACGNFVSSSIDKLLQTLEHSEAESSVVLLALNQDHSVGKPNANVQPQMKDPSDGRMTSQVPYVDYDEKASNASLALKELGVCNYSRVFVKDGNCMPLVSEVGNLEKLAETVAVVMEEENSRCAEDKLEACIKEEVSCSTKFVELSSERHNLDPGDATSQRQVGFKTKNTSLDLLKTNECKTKLSKSSRTPVQAGNYQDNIALETKCSPLTDESTMSSHVRQSNIRNNAERRTKSISGDFPQESQGSARAISTWRRNVSKPSQSSEGSVNLAPFQSASPVPLQSPTFASGLSQKHS

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
2209		20		80	0.995493
2399	55	44			1.0
2473	12	87			0.992554
2475	87	12			0.992554
2477		87		12	0.992554
2478	85	14			0.993533
2479		85		14	0.993533
2480		16	83		0.994512
2482	83			16	0.994512
2516	75	25			0.996473
2517	75		25		0.996473
2518	75	25			0.996473
2519	50			50	1.0
2522	25			75	0.996473
2523			25	75	0.996473
2524	25	75			0.996473
2604	75	25			0.996473
2605	75	25			0.996473
2607			75	25	0.996473
2958		80		20	0.995493
2963	80		20		0.995493
2978		80	20		0.995493
2989	83		16		0.994512
2992		16		83	0.994512
3083	80		20		0.999996
3217		11	88		0.923564
3218	88	11			0.923564
3220	11		88		0.923564
3221		88		11	0.923564
3252		20	80		0.995493
3254	80	20			0.995493
3255		20		80	0.995493
3257	80			20	0.995493
3273		33		66	0.997452
3274	66	33			0.997452
3275	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2647	2659	AAC AAC AAC AAC A	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain