SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1872

Length: 1098 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1872

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA	-	-	82%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	histone 2	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	nucleosome assembly	GO:0006334	Biological Process	91%
Blast2go	DNA binding	GO:0003677	Molecular Function	91%
Blast2go	nucleosome	GO:0000786	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H2A	IPR002119	-	-

Full-Lengther Next Prediction

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
138	66	33			0.997452
142		33		66	0.997452
145		66	33		0.997452
146	66		33		0.997452
147	66	33			0.997452
151	33	66			0.997452
156	33	66			0.997452
213		66		33	0.997452
366	33	66			1.0
383		85	14		0.993533
386			85	14	0.993533
389		14	85		0.993533
390		14		85	0.993533
393	85		14		0.993533
395	85	14			0.993533
397		85	14		0.993533
398	85			14	0.993533
402	83	16			0.994512
403	83			16	0.994512
404		16	83		0.994512
433	85			14	0.993533
434	85		14		0.993533
508		87		12	0.992554
509		12		87	0.992554
611			12	87	0.992554
612			87	12	0.992554
616		87		12	0.992554
617	87		12		0.992554
619		12		87	0.992554
620		12		87	0.992554
625	87	12			0.992554
628	87		12		0.992554
631	12			87	0.992554
633	87			12	0.992554
635	12			87	0.992554
636			87	12	0.992554
638			12	87	0.992554
639		12	87		0.992554
683			80	20	0.995493
738			90	10	0.90298
739	90			10	0.90298
740		90	10		0.90298
743		20		80	0.999996
747	80		20		0.999996
748		20		80	0.999996
750	80		20		0.999996
751	80			20	0.999996
752		20	80		0.999996
753	20		80		0.999996
754		20	80		0.999996
757	10	90			0.90298
861		12	87		0.992554
923			57	42	1.0
950		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain