SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1869

Length: 2427 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1869
CGTCGTGACCTTGGCTGTCACTCAATTTACACGTCGTGAACCTTGGCTGTCACTCAATGTTTACTATCAGAGGAATATTTTAAAACAGTATAATAGATATAGGGCTTAGAGAGGGTTTATGTTCATGAGCAGCGTAGAGCAGAGACCCTATAGAGATATAGAGAGGGTTTATGTTCATGAGCAGCATAGATATGTTCATGAGCAGTATAGAGAAGCAGAGAAAGATAGAGCAGTAAGCAAGAGGCAACAATCCAGACATGGGAAAGAAGAAAAGTTTCGTGAACAAGAAGAACTCTGCAACATTCCGTTTGGTTTACAGAGATTCACCGTCGACTTTCTCTGATCCATTCGGGTTTTTAAACGACGGTGAGAGGGTTTTCACGCGGGTCGACGAAGGCACAAGCTACGTTCCGGGCTTCACAGACGATGACCCTCGCGCCAATTTAGAAGAGGGAGAAACTGACTCCATCTTTGCAGACGCTGATGAAGATTCAGGCGAGGAAGCCAACATCAGGCCCAAGAAAGATAAATATAAGAGCACTCATCCGATCCCCATGGATCGAATAATGGGCAAGGGCAAGGTCCTCTGCCTGATCACATCAGAAAAGAAATCATAGAGCTCGGTTTTCCTGACGATGGCTACAATTATCTCATGCATATGAGGGAAATCAGGGCTTCTGGAGGGGGTTCTGCCTTTGTTCCCTGCAGGAAACCTAGGCTGGAATCCATACGACCAGATGTCAAGGCATATGATGCATCTAATCTACAAGTTTCAACCTGTAATGAAGATGACTCAAATTCCAATGCTCTGTATGGTGTGAGTTCAAGCACACGTTATATGCGCAATGTTCGGAAGGCTGTTGACCCTGAAATACTTGCTCAACTTGATAAAAGTGATGGTTCTGAGTTTGGTTCTGATGTTGAAAACTTGGAAGAAGACTTTGTTGTCCAAGCTAATATACTGGAGGAAGAGGGTGGGGAAACTTCTGTTGGATTAACAGAAATTAAGCAAGAATGTGATCATGCCAATCAATCAGTCCCTGTTCAAGATGAAATCAGTGCAGCTCTGGTTGATGATGCATCGCAATTTTCTACAGCTGGACATGTGGTGGAAAGAATGCAGAGAACTCCCAGACTTCTAGATGAGCAGTTTGAACTGCTTGCTCTTCGTGAATATAGTGATGGTGACAGTGATGCTTCTGACATCTGTGATCATGATGTGGTTGGTGCTGGCAATATTCATGCCCCTGAAATTGATATTGCAATGAAAGAATTCTTGACTAATAACTTGGACTTTCAAGATAGATATACAGTTCCTGCTGATATTCGCATTGATAATATTGCAAAAAACTCCAGCGAGAATCAAGATAGTGCAACAGTGCATGAAAATACACCTGTCAATGATGTGATTTCTAGATGCAAAGCATATGGTGAGATGTATGCAAACGAGTCTCAAGAAGAAAAGGAAATTGTGCTGGTTGAAGACAGCAGTGATAATGAAGATAAAGCGTGGGACTGTGAAACCATCGTTTCCACTTATTCCAACCTCGATAATCATCCTGCTAGAATAGGTGCTCCTCAAAAGCCTGGTAGGAAGGATATTTCTCGAAATTCTCATAGAGCTTCAGATTTGAAAGGTCCGATCATATCTCTTCGAGGAAAGCAGCAAATTCCAGTGGATTATCTTCCTCGGACTGGGTCTTCAAGAAAGGTGGGAAAGATAGAAAATACAAAAGCAGAAACCTCAAGTTCAAACTCAAATGTTGGTGGGCATAGCAGGACTGGAGAAACATTGGAGCAGAAGAGAGATCGGAAGTCTGCACTGAAAAAGGAGAAAAGGGAAGCAAGGATGGCCAAAAAAGAGCTTAAGACACTCTATAGAGATGTATCACAGCATGCTCAGTCTGCTGTTGCTGTTGCCGGCCCACGTGGCATTCATCTCATGTAAATGCGGGCTTCAATTTTTGGAAAGATTCTTTGTTTTGAATAGTGATTGTGGTTGTTACAACTATCTGTTCCAAAGGCAGACAGTGGTAGAGATGTATAATGAATTTTCTATATGATTATATTTATTTGAAGGAATTATTTATTTAAGAAATGAGATTTTCAGTTACATGTGTCAGTAAAAGCCATTAGGAAGTTCTCTATATCTACTATTTTTTAAGCCAATACCTTCAAAAACGATAGTTTGCAAGAAAAAACTCTGATCTTCATTCGAATCAGAATAACAGGTTGCAATCAATTTTTGATTGAAAACTAGAGGCTACATTGATAAAATCCCTCGCCATTCCTATGACAGTTGTTGGGAGCCATTATGGTGATATCTCTGTGATTCCAATATTAGGTTCTGCAACAAGTGACACAAATTGTGTTGTGGTAGTGTGTGTATTATGTATTATCTATGAGCATCATAGCTGTTATAAACCC

Ace file of the UniGene sp_v2.0_unigene1869 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	46%
Blast2go	protein ltv1 homolog	-	-	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	Low temperature viability protein	IPR007307	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: F6GZQ7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 421 aas, putative chimeric sequence, your sequence is shorter than subject: 120 - 541

Fln protein: MGKKKSFVNKKNSATFRLVYRDSPSTFSDPFGFLNDGERVFTRVDEGTSYVPGFTDDDPRANLEEGETDSIFADADEDSGEEANIRPKKDKYKSTHPIPMDRIMGKGKVLCLITSEKKS*

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTACACGTCGTGAACCTTGGCTGTCACTCAATGTTTACTATCAGAGGAATATTTTAAAACAGTATAATAGATATAGGGCTTAGAGAGGGTTTATGTTCATGAGCAGCGTAGAGCAGAGACCCTATAGAGATATAGAGAGGGTTTATGTTCATGAGCAGCATAGATATGTTCATGAGCAGTATAGAGAAGCAGAGAAAGATAGAGCAGTAAGCAAGAGGCAACAATCCAGAC_-_ATGGGAAAGAAGAAAAGTTTCGTGAACAAGAAGAACTCTGCAACATTCCGTTTGGTTTACAGAGATTCACCGTCGACTTTCTCTGATCCATTCGGGTTTTTAAACGACGGTGAGAGGGTTTTCACGCGGGTCGACGAAGGCACAAGCTACGTTCCGGGCTTCACAGACGATGACCCTCGCGCCAATTTAGAAGAGGGAGAAACTGACTCCATCTTTGCAGACGCTGATGAAGATTCAGGCGAGGAAGCCAACATCAGGCCCAAGAAAGATAAATATAAGAGCACTCATCCGATCCCCATGGATCGAATAATGGGCAAGGGCAAGGTCCTCTGCCTGATCACATCAGAAAAGAAATCATAG___AGCTCGGTTTTCCTGACGATGGCTACAATTATCTCATGCATATGAGGGAAATCAGGGCTTCTGGAGGGGGTTCTGCCTTTGTTCCCTGCAGGAAACCTAGGCTGGAATCCATACGACCAGATGTCAAGGCATATGATGCATCTAATCTACAAGTTTCAACCTGTAATGAAGATGACTCAAATTCCAATGCTCTGTATGGTGTGAGTTCAAGCACACGTTATATGCGCAATGTTCGGAAGGCTGTTGACCCTGAAATACTTGCTCAACTTGATAAAAGTGATGGTTCTGAGTTTGGTTCTGATGTTGAAAACTTGGAAGAAGACTTTGTTGTCCAAGCTAATATACTGGAGGAAGAGGGTGGGGAAACTTCTGTTGGATTAACAGAAATTAAGCAAGAATGTGATCATGCCAATCAATCAGTCCCTGTTCAAGATGAAATCAGTGCAGCTCTGGTTGATGATGCATCGCAATTTTCTACAGCTGGACATGTGGTGGAAAGAATGCAGAGAACTCCCAGACTTCTAGATGAGCAGTTTGAACTGCTTGCTCTTCGTGAATATAGTGATGGTGACAGTGATGCTTCTGACATCTGTGATCATGATGTGGTTGGTGCTGGCAATATTCATGCCCCTGAAATTGATATTGCAATGAAAGAATTCTTGACTAATAACTTGGACTTTCAAGATAGATATACAGTTCCTGCTGATATTCGCATTGATAATATTGCAAAAAACTCCAGCGAGAATCAAGATAGTGCAACAGTGCATGAAAATACACCTGTCAATGATGTGATTTCTAGATGCAAAGCATATGGTGAGATGTATGCAAACGAGTCTCAAGAAGAAAAGGAAATTGTGCTGGTTGAAGACAGCAGTGATAATGAAGATAAAGCGTGGGACTGTGAAACCATCGTTTCCACTTATTCCAACCTCGATAATCATCCTGCTAGAATAGGTGCTCCTCAAAAGCCTGGTAGGAAGGATATTTCTCGAAATTCTCATAGAGCTTCAGATTTGAAAGGTCCGATCATATCTCTTCGAGGAAAGCAGCAAATTCCAGTGGATTATCTTCCTCGGACTGGGTCTTCAAGAAAGGTGGGAAAGATAGAAAATACAAAAGCAGAAACCTCAAGTTCAAACTCAAATGTTGGTGGGCATAGCAGGACTGGAGAAACATTGGAGCAGAAGAGAGATCGGAAGTCTGCACTGAAAAAGGAGAAAAGGGAAGCAAGGATGGCCAAAAAAGAGCTTAAGACACTCTATAGAGATGTATCACAGCATGCTCAGTCTGCTGTTGCTGTTGCCGGCCCACGTGGCATTCATCTCATGTAAATGCGGGCTTCAATTTTTGGAAAGATTCTTTGTTTTGAATAGTGATTGTGGTTGTTACAACTATCTGTTCCAAAGGCAGACAGTGGTAGAGATGTATAATGAATTTTCTATATGATTATATTTATTTGAAGGAATTATTTATTTAAGAAATGAGATTTTCAGTTACATGTGTCAGTAAAAGCCATTAGGAAGTTCTCTATATCTACTATTTTTTAAGCCAATACCTTCAAAAACGATAGTTTGCAAGAAAAAACTCTGATCTTCATTCGAATCAGAATAACAGGTTGCAATCAATTTTTGATTGAAAACTAGAGGCTACATTGATAAAATCCCTCGCCATTCCTATGACAGTTGTTGGGAGCCATTATGGTGATATCTCTGTGATTCCAATATTAGGTTCTGCAACAAGTGACACAAATTGTGTTGTGGTAGTGTGTGTATTATGTATTATCTATGAGCATCATAGCTGTTATAAACCC

Fln Alignment:

Contig1869___MGKKKSFVNKKNSATFRLVYRDSPSTFSDPFGFLNDG-ERVFTRVDEGTSYVPGF---TDDDPRANLEEGETDSIFADA--DEDSGEE
F6GZQ7______________MGKKK-FIDKKKSATFQLLARDS----SDPNYQDSPGHDRVFIRVDNNPYSVDGIFHESDDLSGPSHYADDPDSIFADAPDDDNDGEE

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
1530		83		16	0.999991
1733	83	16			0.994512
1734	83			16	0.994512
1763	14			85	0.993533
1764		14		85	0.993533
1795		85		14	0.993533
1821	20			80	0.995493
1823	20			60	0.99255
2079	12	87			0.992554
2080		87		12	0.992554
2181	11			88	0.999937
2304	9	90			0.999872
2305	90		9		0.999872
2307		5	25		1.0
2308	25	5	70		1.0
2314	77			22	0.999999
2315	77		22		0.999999
2317		77	22		0.999999
2318		77		22	0.999999
2319		77	22		0.999999
2320	22			77	0.999999
2322	22			77	0.999999
2325		22		77	0.999999
2329		77	22		0.999999
2330		77		22	0.999999
2332	22			77	0.999999
2333	77	22			0.999999
2334			22	77	0.999999
2336		22		77	0.999999
2337		77	22		0.999999
2348	16			83	0.994512
2349			16	83	0.994512
2351			16	83	0.994512
2353	83	16			0.994512
2355	83		16		0.994512
2356		16		83	0.994512
2357	83	16			0.994512
2358	16			83	0.994512
2359	16			83	0.994512
2360		83	16		0.994512
2361		83	16		0.994512
2364	16			83	0.994512
2367		16		83	0.994512
2368	83		16		0.994512
2380			60	40	1.0
2382		40	60		1.0
2383	60			40	1.0
2385	60			40	1.0
2388		60		40	1.0
2389	60			40	1.0
2390	60			40	1.0
2391			60	40	1.0
2400		60		40	1.0
2401			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain