SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1860

Length: 1550 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1860 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative translation factor [Arabidopsis thaliana] gb\|AAF03443.1\|AC010797_19 hypothetical protein [Arabidopsis thaliana] gb\|AAL84979.1\| At3g1920/F28J7.25 [Arabidopsis thaliana] gb\|AAN28792.1\| At3g1920/F28J7.25 [Arabidopsis thaliana] gb\|AEE73735.1\| putativ	-	-	59%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	62%
Blast2go	translation factor	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3		IPR004388	-	-
Sma3	YrdC-like domain	IPR006070	-	-
Sma3	DHBP synthase RibB-like alpha/beta domain	IPR017945	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SVP6

Fln msg: your sequence is longer than subject: 327 - 291

Fln protein: MATPLRPRVLGLSTFSAETSKSFTLLSSFHRPYNISPLKEGFPRGRNLKFSKGLSSIRPSGRKEGITVEAVVKRSPKRLKYSSPPFRKGDRVLYVEIDPSGVDAWRLEPVIELLKHGAVGIIPTDTVYAFVSDVKNPMAVERIHRIKGMDTKKPLSILCHSFRDIDTYTTGLPCGNSQGQANIFRAARQCLPGPYTFVLPASKELPKQCVKSGTSRAKHVSRKCVGVRMPNDAICQAILEKLDGPLLCSSVRTADDEWIIDPVVIADIYGASMGQEGVDFIVDGGVRVADPSTVVDMTGSEPILLRKGKGVCYDWMLPKESEETLI*

Protein Length: 328

Fln nts: TGAGGCTGGAATGAAAACGCCTTCTATGAGTAGCGGCTGTTTAATCCCATATAATATTATTAACATGCTTTTGGTACCCGTCTTTCTCAATTCATTCACCGCAACGAGCAATTTCCAGAAAGGCTTGTGAATTTCGATTATCAATGGCTAGTACTTTATAGCCGCGCGTTCTTGGGTTGTCGTGAATTTCAGTTATCA_-_ATGGCTACTCCTTTAAGGCCGCGCGTTCTTGGGTTGTCTACATTCTCTGCAGAAACCTCCAAGTCTTTTACTCTCCTCTCTTCTTTCCACCGACCTTATAACATCTCTCCCTTAAAAGAAGGCTTTCCGAGAGGTCGGAATTTGAAATTCTCAAAAGGCTTGAGCTCAATCCGGCCATCTGGACGGAAGGAGGGAATTACAGTTGAAGCTGTTGTCAAGCGAAGTCCCAAGCGGTTAAAATACTCGTCTCCTCCATTTCGCAAGGGTGATAGAGTATTGTACGTGGAAATTGATCCATCCGGTGTAGATGCATGGAGATTAGAACCAGTGATAGAACTGCTAAAACATGGAGCAGTTGGAATCATCCCGACAGATACTGTGTATGCATTTGTCAGTGATGTCAAGAATCCGATGGCTGTTGAGCGTATTCACCGAATAAAAGGCATGGATACAAAAAAGCCTCTTAGTATATTATGCCATTCCTTCCGAGATATAGACACCTATACAACAGGCCTTCCATGTGGTAACAGCCAAGGTCAAGCCAATATCTTCCGTGCTGCTCGTCAATGCCTACCAGGACCTTACACTTTTGTATTACCAGCAAGCAAAGAATTGCCGAAACAATGTGTGAAATCTGGGACTTCTAGGGCTAAACATGTTTCTCGAAAGTGTGTTGGGGTTCGGATGCCTAATGATGCTATATGCCAAGCTATCTTAGAGAAGCTGGATGGACCCTTGCTTTGCTCAAGTGTGAGGACTGCAGATGATGAATGGATTATTGATCCTGTAGTCATTGCTGACATTTATGGTGCAAGCATGGGCCAGGAGGGTGTAGACTTTATTGTTGATGGTGGTGTTCGTGTGGCGGATCCATCCACTGTGGTCGATATGACAGGAAGTGAGCCTATACTACTACGGAAAGGAAAGGGTGTTTGCTATGACTGGATGCTCCCAAAAGAATCTGAAGAGACTTTAATCTGA___GTGATTGTAGGTTACAACCTACTAAATTATGTTGACTAGTTGAATAGCTCCTCTTCGTTGAACAACTGGGGTTTTAGTCTTTATTTTCAATATTGTAGATTACAACTCCTAAATTGTTCTAACTCGTTGTCAACTTCCTTCCCTTCATTGAACAACTAGGGTTTTATTCTTTCTTTTCAGGATTGTATATTTACTTGAAGTGAGATCATTATATCAGTATTGACTTTACAAACAATTGCAGAGATCAGTGATGTATGTTGCAAAGATATCAATGTGCTTCTTGTAATTATTTTGTAAATATTATTTCAGCTTGTTAAGCATTTACTTGCATTTGAACAGTGTTAATTATGCAGTACATGCCTATATCTTGT

Fln Alignment:

Contig1860___SIRPSGRKEGITVEAVVKRSPKRLKYSSPPFRKGDRVLYVEIDPSGVDAWRLEPVIELLKHGAVGIIPTDTVYAFVSDVKNPMAVERIHRIKGMDTKKPLSILCHSFRDIDTYTTGLPCGNSQGQANIFRAARQCLPGPYTFVLPASKELPKQCVK-SGTSRAKHVSRKCVGVRMPNDAICQAILEKLDGPLLCSSVR-TADDEWIIDPVVIADIYGASMGQEGVDFIVDGGVRVADPSTVVDMTGSEPILLRKGKGVCYDWMLPKESEET
A9SVP6______________SLHPAPPRLLVTVQAVAKRSPKRLKYSSPASRKNSQVQLVQLDPSGSDVWRLDPLVELIKSGAVGIIPTDTVYAIVCDLKNRQAIDRLYRIKNMDPMKPLSILCRSFQDIDKYTLGFPRGNSHGQTNVFRAARQSLPGPYTFILPASKEMPKQCTTFGGSSAVSCAPRKSVGVRMPDDVICAELLKRLDEPLLCTSVRQRSEDEWMLDPVIIADTYGASEGREGVDFVIDGGERLAYPSTVIDMTGEKPIILRRGKGPVEEWMLMESHDST

SNPs (tot: 5)

Position	C %	G %	T %	Probability
1452	16	83		0.994512
1472	25	75		0.996473
1473	25	75		0.996473
1474	25	75		0.996473
1478	75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain