SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1856

Length: 2148 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1856
CGTCGTGACCTTGGCTGTCACTCCATATTATACTGATTAAAAAGGGAATTACGACATATGAATATGTAGTGGCAATGAGGTCACAAAGTGAGCCGCCAGGAGTTTCTGCTGAGGGTGATGCACGAAGTATACCTTCTTCTCCAAGTGGTTCAACTGCCACTGGTTTAAGTGGAGGAAGTTCTCTTGGTTTGCAGTATAAAGGTGCATGGTGTACACCACCTAGAATATTTGTTGAGCATCAGGATGAAGTTATTCCACACTTGGGCCCTGGGCAAGTGCCATCCACTGTTGATCCTGATGATATCGAGGTTGTAAATAGGATGGAAAACAGGATGCAGAAGCGTCCTGTTAGAATCAGTGCTTGGAGGCTGGCCAAATTGAATCCAGATGAAGCTATGCGAGCAGCGGCAAAGGCTAGGGAGTCTTCATCTGTTTTGCGTCCAGTTGGTGCTCGAGGAGTCCCTGATACTGATTATAGCTCTAGTGGCAATGCTAGTAGCAGGAGCAGTATGAGTACAGAATTTGCTGCAAAGAAGAGACTGCGTCGTGAGCGTTTTCTGTCACCTTTGAAATATAGCTACCCTCCAAGTCGTGCTAGCAAAGATGATATTGAAACTGGAACACAAAGTTTAAGTAGCTACAGCAGTCCTGGCCATCTGAATGAATCGGCTACACTGAGTCCTCTCCCACAAGAGCACAGATATGGTCCTACGAGTGGGATGCATTTATCAGCTCCTCTGAATAGGACACGTGTGGAACCTTTGCCCGCAATAGCAACGAACATGTCAAATATGAGGTCCAATATTCCAATTTACAATTCTGCCTTAGAGCATTCTCTCTATTCAGGATTTTCTTCCGCAGGTGATGCTTATGAAGCATTTACTGATGATCATGTTGAAGGTGGACTATCGCGAAATAACATGGTTATTGGACAAGTGGGTGCAAACCAACCGATTAGAATGGCAAGAGAGAACAGGAGGTCATCTGTTTTTTGGGACCAAACTGCTGGAAGGTATGTATCGTTTGCAGTTCCTGGTAGAAATGAGCTTGCCAGCGAAGGAGGCACAGTTTTTCGCTCACAGGGCCACTTGGCTGATGAATCATCATCTCCATCTTTATACTCAGAAAATCTCACGAGGGAAGGTGATATTGACAGAAGATCTCCCTCTCCAAATCTTCAGGTGTTGCATTCACCCTCTTCCGATCTTCATTTATATGAGCTGCCCTCTCCTAGGCCACATGTGCATCCGAGGAGTTCAGGTAGGCTGGGTTCAGTTTCACAATCCGAAAACCTTTTGTACAGTGGTGACTCTATATTTTATGGGGGCCCTCTTGGTGTACCTTCGATGATAAACACTAGAAAGGAAAGTTCTTCAGGCCCTGACCATGAAGGCTCTCAGAAATCATCTAGTTCACATGTTATTCCACCACAGGCTTCTCAGGAAACCAGACCATTGCGTGGACAATTAGTGCAATCTCAGTCTCCTGTGTTTGTACCACGGTCTATGCAACCAAATCCATTTTCCCATTTTTCTTCTCAATAGTTCATGACATCGTTCTTATTTAAGGTCGTGAACTAATCTCCTGGTAATTTCAGTGGACTCCTGAAAGGCTCCAATTTCAGGAAATTTATTTTGGTTTCTGAAAGACCAGAAAATTAATTCAGTAGACTTCCCACTTTTGGATCATCTCAGGCGTTTGGGTCAACTGCAAGGTTGCACATTTAGCTGTAATTTAATGATTGAACTTATTGGCAGGGATTAGTGAATCTATTTGTGGCATTGGTTTTTATTGCCAGCACAAGTATTCTGCTATAAAGTTGCTTATCTGACTTACCAGTAGAGGTTGGTTTCATGACTCCACTTTTTATTTACTGCTGTCAAGGGCTGGAGAAAAGTTGTATGGCAGTAGCAGTCGGAAGCATTGATATACCTTCCATTGTCTGACTTAGTTTTCAAGAAAGCTTTCAAGTAGTGCTAAAGGTGCGGATGCTTGAATTTTTTGAGCTGCTGACTATTACATTCATTGTAAACCATTGTACTACTATTTATGAACGCCATTTGAAATGCGCTTTGTACAAGGATTTCATTTTTGTTCTGAAGAAATAGTCTTTGCTACTGTGAAACTTTTGGAAAGCTAAAGTTCATT

Ace file of the UniGene sp_v2.0_unigene1856 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S4Y7_RICCO	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	zinc finger family protein	-	-	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	54%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	Chaperonin Cpn60	IPR001844	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	Peroxisome biogenesis factor 1, N-terminal	IPR015342	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8J5

Fln msg: your sequence is longer than subject: 490 - 65

Fln protein: MRSQSEPPGVSAEGDARSIPSSPSGSTATGLSGGSSLGLQYKGAWCTPPRIFVEHQDEVIPHLGPGQVPSTVDPDDIEVVNRMENRMQKRPVRISAWRLAKLNPDEAMRAAAKARESSSVLRPVGARGVPDTDYSSSGNASSRSSMSTEFAAKKRLRRERFLSPLKYSYPPSRASKDDIETGTQSLSSYSSPGHLNESATLSPLPQEHRYGPTSGMHLSAPLNRTRVEPLPAIATNMSNMRSNIPIYNSALEHSLYSGFSSAGDAYEAFTDDHVEGGLSRNNMVIGQVGANQPIRMARENRRSSVFWDQTAGRYVSFAVPGRNELASEGGTVFRSQGHLADESSSPSLYSENLTREGDIDRRSPSPNLQVLHSPSSDLHLYELPSPRPHVHPRSSGRLGSVSQSENLLYSGDSIFYGGPLGVPSMINTRKESSSGPDHEGSQKSSSSHVIPPQASQETRPLRGQLVQSQSPVFVPRSMQPNPFSHFSSQ*

Protein Length: 491

Fln nts: CGTCGTGACCTTGGCTGTCACTCCATATTATACTGATTAAAAAGGGAATTACGACATATGAATATGTAGTGGCA_-_ATGAGGTCACAAAGTGAGCCGCCAGGAGTTTCTGCTGAGGGTGATGCACGAAGTATACCTTCTTCTCCAAGTGGTTCAACTGCCACTGGTTTAAGTGGAGGAAGTTCTCTTGGTTTGCAGTATAAAGGTGCATGGTGTACACCACCTAGAATATTTGTTGAGCATCAGGATGAAGTTATTCCACACTTGGGCCCTGGGCAAGTGCCATCCACTGTTGATCCTGATGATATCGAGGTTGTAAATAGGATGGAAAACAGGATGCAGAAGCGTCCTGTTAGAATCAGTGCTTGGAGGCTGGCCAAATTGAATCCAGATGAAGCTATGCGAGCAGCGGCAAAGGCTAGGGAGTCTTCATCTGTTTTGCGTCCAGTTGGTGCTCGAGGAGTCCCTGATACTGATTATAGCTCTAGTGGCAATGCTAGTAGCAGGAGCAGTATGAGTACAGAATTTGCTGCAAAGAAGAGACTGCGTCGTGAGCGTTTTCTGTCACCTTTGAAATATAGCTACCCTCCAAGTCGTGCTAGCAAAGATGATATTGAAACTGGAACACAAAGTTTAAGTAGCTACAGCAGTCCTGGCCATCTGAATGAATCGGCTACACTGAGTCCTCTCCCACAAGAGCACAGATATGGTCCTACGAGTGGGATGCATTTATCAGCTCCTCTGAATAGGACACGTGTGGAACCTTTGCCCGCAATAGCAACGAACATGTCAAATATGAGGTCCAATATTCCAATTTACAATTCTGCCTTAGAGCATTCTCTCTATTCAGGATTTTCTTCCGCAGGTGATGCTTATGAAGCATTTACTGATGATCATGTTGAAGGTGGACTATCGCGAAATAACATGGTTATTGGACAAGTGGGTGCAAACCAACCGATTAGAATGGCAAGAGAGAACAGGAGGTCATCTGTTTTTTGGGACCAAACTGCTGGAAGGTATGTATCGTTTGCAGTTCCTGGTAGAAATGAGCTTGCCAGCGAAGGAGGCACAGTTTTTCGCTCACAGGGCCACTTGGCTGATGAATCATCATCTCCATCTTTATACTCAGAAAATCTCACGAGGGAAGGTGATATTGACAGAAGATCTCCCTCTCCAAATCTTCAGGTGTTGCATTCACCCTCTTCCGATCTTCATTTATATGAGCTGCCCTCTCCTAGGCCACATGTGCATCCGAGGAGTTCAGGTAGGCTGGGTTCAGTTTCACAATCCGAAAACCTTTTGTACAGTGGTGACTCTATATTTTATGGGGGCCCTCTTGGTGTACCTTCGATGATAAACACTAGAAAGGAAAGTTCTTCAGGCCCTGACCATGAAGGCTCTCAGAAATCATCTAGTTCACATGTTATTCCACCACAGGCTTCTCAGGAAACCAGACCATTGCGTGGACAATTAGTGCAATCTCAGTCTCCTGTGTTTGTACCACGGTCTATGCAACCAAATCCATTTTCCCATTTTTCTTCTCAATAG___TTCATGACATCGTTCTTATTTAAGGTCGTGAACTAATCTCCTGGTAATTTCAGTGGACTCCTGAAAGGCTCCAATTTCAGGAAATTTATTTTGGTTTCTGAAAGACCAGAAAATTAATTCAGTAGACTTCCCACTTTTGGATCATCTCAGGCGTTTGGGTCAACTGCAAGGTTGCACATTTAGCTGTAATTTAATGATTGAACTTATTGGCAGGGATTAGTGAATCTATTTGTGGCATTGGTTTTTATTGCCAGCACAAGTATTCTGCTATAAAGTTGCTTATCTGACTTACCAGTAGAGGTTGGTTTCATGACTCCACTTTTTATTTACTGCTGTCAAGGGCTGGAGAAAAGTTGTATGGCAGTAGCAGTCGGAAGCATTGATATACCTTCCATTGTCTGACTTAGTTTTCAAGAAAGCTTTCAAGTAGTGCTAAAGGTGCGGATGCTTGAATTTTTTGAGCTGCTGACTATTACATTCATTGTAAACCATTGTACTACTATTTATGAACGCCATTTGAAATGCGCTTTGTACAAGGATTTCATTTTTGTTCTGAAGAAATAGTCTTTGCTACTGTGAAACTTTTGGAAAGCTAAAGTTCATT

Fln Alignment:

Contig1856___MINTRKESSSGPDHEGSQKSSSSHVIPPQASQETRPLRGQLVQSQSPVFVPRSMQPNPFSHFSSQ
D5A8J5______________MESTRKESSSGPDLEGSQRSSNSHVMPPQASQDARPLRGQLVPSQSPVFVLRSMQANSFSRFSSQ

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1771		33		66	0.997452
1864		85		14	0.993533
1865	16		16		0.988813
1873		50		50	1.0
2029		33		66	1.0
2054		83		16	0.994512
2112		33		66	0.997452
2113		33		66	0.997452
2114		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain