SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1850

Length: 1415 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1850

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable pyridoxal biosynthesis protein PDX1 n=2 Tax=Spermatophyta RepID=PDX1_GINBI	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	pyridoxal phosphate biosynthetic process	GO:0042823	Biological Process	0.0	75%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Vitamin B6 biosynthesis protein	IPR001852	-	-
Sma3	Ribonuclease P/MRP protein subunit	IPR002759	-	-
Sma3	Thiazole biosynthesis	IPR008867	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Indole-3-glycerol phosphate synthase	IPR013798	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8T3

Fln msg:

Fln protein: MSGSGNAGVVALLECGSSDSKKSSSYAMKVTLAQMLRGGVIVNVNNPRQARIAEEAGAVAVTAAGPLGDAVNRMIDPGLVRRIKKSVSIPVISRARIGHFVEAQILEAVGVDFIDESETLTPADDSNFTNKHNFRCPFVCGCRDLGEALRRIAEGAAMVRTAGNRSDNVAEAVGNLRSVLGQVRRLQIIDEDELYAFAKGINAPFELVKLTKQLGRLPVIVFGFGGIATPADAAMLMQIGCDGVFVDSSVFDCEDPASRVQAFVEAVAHYNDSHILAKVSSSMADLDINYKDLVQTQQTRSSD*

Protein Length: 305

Fln nts: GCATCCAGAACACTCTAGACAAACCGACCACCTTTATACATAGCATCGCCATTCCTCTTTCATGGGGATACCCAAGTTGAAGATTCAAGCCATTTCTGTGAGAAATCCAATTCTCCGAGAAATTTTCCCCGAGTTTCGAACGCCCAACCTGTGCCTACA_-_ATGTCTGGGAGTGGAAATGCCGGTGTGGTGGCCTTGCTGGAATGTGGGAGCAGCGATTCGAAGAAATCTTCGTCATATGCTATGAAAGTTACCTTGGCCCAGATGCTCCGGGGCGGTGTGATCGTCAATGTGAATAATCCCAGGCAGGCTCGAATCGCAGAAGAGGCTGGAGCCGTAGCAGTGACAGCGGCGGGGCCGCTTGGGGACGCCGTTAACAGAATGATCGATCCGGGTCTGGTTCGGCGGATCAAGAAATCCGTCAGTATTCCTGTCATATCCCGTGCCCGAATCGGCCATTTCGTGGAGGCCCAGATCTTGGAAGCCGTGGGCGTGGATTTCATTGATGAGAGCGAGACTCTGACGCCGGCAGATGATTCGAATTTTACAAACAAACACAATTTCCGGTGTCCATTCGTCTGCGGCTGCCGGGACCTTGGGGAGGCCCTGCGTCGTATTGCGGAGGGCGCCGCGATGGTGAGGACGGCCGGGAATCGATCCGACAATGTGGCGGAGGCAGTCGGAAACTTGCGCTCCGTGCTCGGGCAGGTCAGGAGGCTGCAGATTATCGACGAGGATGAGCTTTACGCGTTCGCGAAGGGGATAAACGCCCCTTTCGAATTGGTGAAATTGACGAAGCAATTGGGGCGTTTGCCGGTGATTGTGTTTGGGTTTGGAGGGATCGCGACCCCAGCAGATGCAGCCATGTTGATGCAAATTGGGTGCGATGGGGTTTTTGTGGATTCTTCTGTCTTCGATTGTGAGGATCCGGCGTCGCGTGTTCAGGCATTCGTCGAGGCTGTGGCGCATTATAATGATTCGCATATTCTGGCGAAGGTTAGTTCCAGCATGGCCGACCTGGATATTAACTATAAGGATTTAGTTCAGACCCAGCAAACAAGGTCTTCGGATTGA___TCTTCATTAGAATTCTATGGTAACAATTTAATTCGATGAAGATGTTGTTTGTTGAATATTGTTGAGAAAATAAGAAGTGGTGGCCTGTTGTCTCCGGTAAGGGTCGATTAATGGGGTTTTTATTATAGGGTTTTGGCTGGCATTTAGGGTTTTTAGGGCGAGCAGGCTGCATTTAACTCTTTTTCTGTTCTTTGTAATTATCGGTGGGTTTTAGGTTTTAGGTTGGGATGCTATTCAATGGGTTTTAAGAAAAATGCAGAATTATGAGAATCTTATTCCCTAGTTGTAATCATTTCTCCATTCTGAAAGGGGTTAAATTTTGCAATCTTCTTTTCAATTGTTGC

Fln Alignment:

Contig1850___GVVALLECGXXXXXXXXXYAMKVTLAQMLRGGVIVNVNNPRQARIXXXXXXXXXXXXXPLG------DAVNRMIDPGLVRRIKKSVSIPVISRARIGHFVEAQILEAVGVDFIDESETLTPADDSNFTNKHNFRCPFVCGCRDLGEALRRIAEGAAMVRTAGNR-SDNVAEAVGNLRSVLGQVRRLQIIDEDELYAFAKGINAPFELVKLTKQLGRLPVIVFGFGGIATPADAAMLMQIGCDGVFVDSSVFDCEDPASRVQAFVEAVAHYNDSHILAKVSSSMAD--LDINYKD
D5A8T3______________GVVTVYGNGAITDPKKSSYAVKVGLAQMLRGGVIMDVVNVEQAKIAEEAGATAVMALERVPADIRAQGGVARMSDPGLIKEIKRAVTIPVMAKARIGHFVEAQILEAIGIDYIDESEVLTVADDMHHINKHNFRMPFVCGCRNLGEALRRIAEGAAMIRTKGEAGTGNVIEAVRHVRSVLGDIRKLQSLDDDEVFTFAKQIAAPYELVRQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYNDPHVLAEVSCDLGEAMVGINLND

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
480	90	10			0.90298
482		90		10	0.90298
487	10		90		0.90298
488		10	90		0.90298
490			90	10	0.90298
494	90	10			0.90298
496			10	90	0.90298
501		10		90	0.90298
504		20		80	0.999996
537			87	12	0.992554
715		75		25	1.0
861		83		16	0.999991
981	92	7			0.999664
985			7	92	0.999664
991		8	92		0.999718

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain