SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1841

Length: 2275 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1841
CGTCGTGACCTTGGCTGTCACGCAAGAAGTCAGCTTATAAAGCCTAGATTGGGCATCAGTGGCCGTGCAAAGAAACTACAATCCTGGTTGGAGATTTAGAAGCTGTGCAAAGAAACTGCACCCTTGATTTGGTTTTGAGTGGCCATTTGGTATTATATTGTTTAGTTTTCTGAGTGCCCATTTGGTATTACATTGTTTAGTTTCTGAGTTCTATAAGTTACAGCAATGGAGGAGGAAACTCTGAGATCTCCTTTGTTAGAGAAAGAAGAGGAAAATGGTGGAGAGATAAGAGATGGGCCTTTGATTCAGAGCAGACCGAATGATCTTTCTCTGGATGCCCATTTAATCTCGAATCCCAAGCAGCTAGCCCGAGAAACTTGGATAGAATCCAAAAAGCTGTGGGCTATTTCAGGCCCTGTGATTTTCACTGCTGTATGCCAGTATTCGCTGGGAGCCATCACCCAGACCTTTGCTGGGCATTTGGGTACTGTTGAACTAGCTGCAGTGGCTATCGAGAACTCTGTTATAGCAGGGCTGGCCTTCGGAACTATGCTTGGCATGGGCAGTGCACTGGAGACACTGTGTGGTCAAGCCTTTGGAGCAGGGCAGATACACATGCTGGGAGTGTATATGCAGAGGTCGTGGATTATACTTCTTGTCACAGCATCAGGCTTAAGCCTCATTTACATTTTTTCACCGCCCATATTGAAGCTTTTTGGGCAATCTGATGAGATTTCTGACTTGGCTGGGAAGTTTGCCATCTGGATGCTTCCTCAGTTATTTGCCTATGCACTAAATTTTCCAATGCAGAAGTTCCTTCAATCGCAGAGAAAGGTCATGGCCATGGCCTGGATCGCTGCAGTGGCTTTAGTTATACACATTTTCTTGAGCTGGCTCTTTATTTTGAAGCTGGGATGGGGTTTGCCAGGAGCAGCCATAACTCTCAACCTTGCATGGGTGATAGTTGATGTGGGGCAGCTGATATATATAATGTCGGGTGCCTTTCCTGGTTCATGGACTGGAATGTCACGGTTGGCATTCCAGGATTTGCCTGCCTTCATCAGGCTTTCCTTGGCTTCTGCTGTGATGCTATGCCTGGAGTTCTGGTATCTTATGATATTGATCGTTTTAGTTGGGCGCCTGAAAAATCCAGAAATTGCAGTAGACTCAATCTCCATTTGTATGAATTTGAACGGATGGGAAATGATGATAGCCCTCGGATTCAATGCTGCTGTCAGTGTGAGAGTGTCGAATGAACTTGGAGCTGGGCGCCCAAAGGCTGGACAGTTTGCAGTAGTGGTGGCGACCTTGACCTCACTAATGATAGGAATAACATGTATGATCATTATTTTCGGCACCAGAAATGAATTTCCAGTGGCTTTTACGAATAGCAAGGAGGTTATGCATGCAGTATCCAAGCTAGCAACTTTGCTTGCACTGACAATGCTTCTCAACAGTGTGCAGCCAGTTCTATCCGGGGTGGCTGTAGGAGCAGGATGGCAATGGTTGGTGGCATATATAAATTTAGGATGCTATTACATTGTTGGGGTTCCTCTTGGTCTGATCTTGGGATACAAATTGGACTTTGGAGCAATGGGTATTTGGGGTGGCATGATTGGAGGAACAGTACTGCAGACTCTAATTCTTATGTTTATCACATATAGGACTAACTGGGACAGAGAGGCTTCACAAGCTGAAGATCGGATTAAACTTTGGGGAGGTTCAGTAGCTTCAATCAAAGACAGTTTAAGGAAGGACACTGGAAGAGATGACAGAGAGCAGTTATCTTCTGAAGTATGAAATGAGGATTGCTACACTGTTACTCTGAAGTGATGCATGTACTCTAATGCATCCACATCACCAGTTTCAGCAGATAATAGGCATTTTTAGGTGTATTTGAAGAGGACAGTGAATTCATGGTGAATTTGATTATGGTGTCTTCTTCCACAATCAAGGACAAAGAGAGTCATTTTGTCAAGCTACATTCAATTGTCTAAACAAATTTTTAATTCCCTCATTCGTTGTTTTCATGGAATCACCCTGTTCTTTTATTGCAGGCTTTGACTTTTACAAATTCTGATTAATGGTATTCTATTTTCCATAACATCATGTAACTATCAGGTGATGTTGAAAAATATACAATCTTCTGCCACATTCAAGAGCAGGGAAAGTCATTTTGTCAAGTTGCACTGACTTGTCTAGACAATTGTTCAATTCCCAAATTCATTATTTTCATGGAACCATCCTGTTCTTTTTATTGCAGACTGACTTTTAC

Ace file of the UniGene sp_v2.0_unigene1841 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MATE efflux family protein [Arabidopsis thaliana] gb\|AAD46034.1\|AC007519_19 F16N3.20 [Arabidopsis thaliana] gb\|AEE32181.1\| MATE efflux family protein [Arabidopsis thaliana]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	multidrug resistance	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	fruit ripening	GO:0009835	Biological Process	77%
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	77%
Blast2go	drug transmembrane transporter activity	GO:0015238	Molecular Function	77%
Blast2go	antiporter activity	GO:0015297	Molecular Function	77%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3		IPR015521	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKL5

Fln msg:

Fln protein: MEEETLRSPLLEKEEENGGEIRDGPLIQSRPNDLSLDAHLISNPKQLARETWIESKKLWAISGPVIFTAVCQYSLGAITQTFAGHLGTVELAAVAIENSVIAGLAFGTMLGMGSALETLCGQAFGAGQIHMLGVYMQRSWIILLVTASGLSLIYIFSPPILKLFGQSDEISDLAGKFAIWMLPQLFAYALNFPMQKFLQSQRKVMAMAWIAAVALVIHIFLSWLFILKLGWGLPGAAITLNLAWVIVDVGQLIYIMSGAFPGSWTGMSRLAFQDLPAFIRLSLASAVMLCLEFWYLMILIVLVGRLKNPEIAVDSISICMNLNGWEMMIALGFNAAVSVRVSNELGAGRPKAGQFAVVVATLTSLMIGITCMIIIFGTRNEFPVAFTNSKEVMHAVSKLATLLALTMLLNSVQPVLSGVAVGAGWQWLVAYINLGCYYIVGVPLGLILGYKLDFGAMGIWGGMIGGTVLQTLILMFITYRTNWDREASQAEDRIKLWGGSVASIKDSLRKDTGRDDREQLSSEV*

Protein Length: 526

Fln nts: CGTCGTGACCTTGGCTGTCACGCAAGAAGTCAGCTTATAAAGCCTAGATTGGGCATCAGTGGCCGTGCAAAGAAACTACAATCCTGGTTGGAGATTTAGAAGCTGTGCAAAGAAACTGCACCCTTGATTTGGTTTTGAGTGGCCATTTGGTATTATATTGTTTAGTTTTCTGAGTGCCCATTTGGTATTACATTGTTTAGTTTCTGAGTTCTATAAGTTACAGCA_-_ATGGAGGAGGAAACTCTGAGATCTCCTTTGTTAGAGAAAGAAGAGGAAAATGGTGGAGAGATAAGAGATGGGCCTTTGATTCAGAGCAGACCGAATGATCTTTCTCTGGATGCCCATTTAATCTCGAATCCCAAGCAGCTAGCCCGAGAAACTTGGATAGAATCCAAAAAGCTGTGGGCTATTTCAGGCCCTGTGATTTTCACTGCTGTATGCCAGTATTCGCTGGGAGCCATCACCCAGACCTTTGCTGGGCATTTGGGTACTGTTGAACTAGCTGCAGTGGCTATCGAGAACTCTGTTATAGCAGGGCTGGCCTTCGGAACTATGCTTGGCATGGGCAGTGCACTGGAGACACTGTGTGGTCAAGCCTTTGGAGCAGGGCAGATACACATGCTGGGAGTGTATATGCAGAGGTCGTGGATTATACTTCTTGTCACAGCATCAGGCTTAAGCCTCATTTACATTTTTTCACCGCCCATATTGAAGCTTTTTGGGCAATCTGATGAGATTTCTGACTTGGCTGGGAAGTTTGCCATCTGGATGCTTCCTCAGTTATTTGCCTATGCACTAAATTTTCCAATGCAGAAGTTCCTTCAATCGCAGAGAAAGGTCATGGCCATGGCCTGGATCGCTGCAGTGGCTTTAGTTATACACATTTTCTTGAGCTGGCTCTTTATTTTGAAGCTGGGATGGGGTTTGCCAGGAGCAGCCATAACTCTCAACCTTGCATGGGTGATAGTTGATGTGGGGCAGCTGATATATATAATGTCGGGTGCCTTTCCTGGTTCATGGACTGGAATGTCACGGTTGGCATTCCAGGATTTGCCTGCCTTCATCAGGCTTTCCTTGGCTTCTGCTGTGATGCTATGCCTGGAGTTCTGGTATCTTATGATATTGATCGTTTTAGTTGGGCGCCTGAAAAATCCAGAAATTGCAGTAGACTCAATCTCCATTTGTATGAATTTGAACGGATGGGAAATGATGATAGCCCTCGGATTCAATGCTGCTGTCAGTGTGAGAGTGTCGAATGAACTTGGAGCTGGGCGCCCAAAGGCTGGACAGTTTGCAGTAGTGGTGGCGACCTTGACCTCACTAATGATAGGAATAACATGTATGATCATTATTTTCGGCACCAGAAATGAATTTCCAGTGGCTTTTACGAATAGCAAGGAGGTTATGCATGCAGTATCCAAGCTAGCAACTTTGCTTGCACTGACAATGCTTCTCAACAGTGTGCAGCCAGTTCTATCCGGGGTGGCTGTAGGAGCAGGATGGCAATGGTTGGTGGCATATATAAATTTAGGATGCTATTACATTGTTGGGGTTCCTCTTGGTCTGATCTTGGGATACAAATTGGACTTTGGAGCAATGGGTATTTGGGGTGGCATGATTGGAGGAACAGTACTGCAGACTCTAATTCTTATGTTTATCACATATAGGACTAACTGGGACAGAGAGGCTTCACAAGCTGAAGATCGGATTAAACTTTGGGGAGGTTCAGTAGCTTCAATCAAAGACAGTTTAAGGAAGGACACTGGAAGAGATGACAGAGAGCAGTTATCTTCTGAAGTATGA___AATGAGGATTGCTACACTGTTACTCTGAAGTGATGCATGTACTCTAATGCATCCACATCACCAGTTTCAGCAGATAATAGGCATTTTTAGGTGTATTTGAAGAGGACAGTGAATTCATGGTGAATTTGATTATGGTGTCTTCTTCCACAATCAAGGACAAAGAGAGTCATTTTGTCAAGCTACATTCAATTGTCTAAACAAATTTTTAATTCCCTCATTCGTTGTTTTCATGGAATCACCCTGTTCTTTTATTGCAGGCTTTGACTTTTACAAATTCTGATTAATGGTATTCTATTTTCCATAACATCATGTAACTATCAGGTGATGTTGAAAAATATACAATCTTCTGCCACATTCAAGAGCAGGGAAAGTCATTTTGTCAAGTTGCACTGACTTGTCTAGACAATTGTTCAATTCCCAAATTCATTATTTTCATGGAACCATCCTGTTCTTTTTATTGCAGACTGACTTTTAC

Fln Alignment:

Contig1841___EEETLRSPLLE--KEEENGGEIRDGPLIQSRPNDLSLDAHLISNPKQLARETWIESKKLWAISGPVIFTAVCQYSLGAITQTFAGHLGTVELAAVAIENSVIAGLAFGTMLGMGSALETLCGQAFGAGQIHMLGVYMQRSWIILLVTASGLSLIYIFSPPILKLFGQSDEISDLAGKFAIWMLPQLFAYALNFPMQKFLQSQRKVMAMAWIAAVALVIHIFLSWLFILKLGWGLPGAAITLNLAWVIVDVGQLIYIMSGAFPGSWTGMSRLAFQDLPAFIRLSLASAVMLCLEFWYLMILIVLVGRLKNPEIAVDSISICMNLNGWEMMIALGFNAAVSVRVSNELGAGRPKAGQFAVVVATLTSLMIGITCMIIIFGTRNEFPVAFTNSKEVMHAVSKXXXXXXXXXXLNSVQPVLSGVAVGAGWQWLVAYINLGCYYIVGVPLGLILGYKLDFXXXXXXXXXXXGTVLQTLILMFITYRTNWDREASQAEDRIKLWGGS
B8LKL5______________DQDSFRSSLLPPVNEEESGKYGDDLPHRYDFPDD----RRPITDCRSLANGCWEESKKLWYLSGPAIFTSVCQYSLGALTQTFAGHIGELELAAVSIENSVIAGLSFGIMMGMGSALETLCGQSVGARRLDLLGLYMQRSWIILLSTALIMSLIYIFATPILVLIGQQKDIADMAGKFAVWMLPQLFAYAMNFPLAKFLQAQSKVMVMSIIAGCALVVHVLLSWILIFKVGWGLPAAALVLNLSWWIIVLAQIGYVFSGACRDAWAGFSWSAFSNLGAFVRLSLASGVMLCLEAWYLYLLILLAGYLKNPTIAVDAISICMNLMGWEFMIAIGFNIAISVRVSNELGAGRPRAAKFSVIVVVGTTFLVGVVLMAIIFITRNEFAVAFTDSKVVMSAVAQLAPLLAFTMLLNSVQPVLSGVAIGAGWQALVAYINLACYYLFGVPLGCLLGYYFDLGVEGIWAGMISGTLLQTIILCIITYRTKWNKEANQAKARITLWGGA

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1131		14		85	0.993533
1232		88		11	0.923564
1233		88	11		0.923564
1246		90	10		0.90298
1249		10	90		0.90298
1253		10		90	0.90298
1254			10	90	0.90298
1293		10		90	0.90298
1296		90		10	0.90298
1609	33	66			0.997452
1610		33		66	0.997452
1615		33		66	0.997452
1970		87		12	0.992554
2126	66		33		0.997452
2150		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain