SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1820

Length: 1166 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1820 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anthranilate synthase component II n=3 Tax=Zea mays RepID=B6UGS8_MAIZE	-	-	65%
FL-Next	sp=Anthranilate synthase component II; Cyanophora paradoxa. Plastid; Cyanelle.	-	-	59%
Blast2go	anthranilate synthase component ii	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Anthranilate synthase.	EC:4.1.3.27	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	83%
Blast2go	Biosynthesis of phenylpropanoids	01061	83%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	83%
Blast2go	Biosynthesis of plant hormones	01070	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	83%
Blast2go	response to salt stress	GO:0009651	Biological Process	83%
Blast2go	glutamine metabolic process	GO:0006541	Biological Process	83%
Blast2go	response to bacterium	GO:0009617	Biological Process	83%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	83%
Blast2go	tryptophan biosynthetic process	GO:0000162	Biological Process	83%
Blast2go	lateral root primordium development	GO:0010386	Biological Process	83%
Blast2go	anthranilate synthase activity	GO:0004049	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3		IPR006220	-	-
Sma3		IPR001317	-	-
Sma3		IPR011702	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3		IPR000991	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Anthranilate synthase, glutamine amidotransferase	IPR006221	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P48261

Fln msg: your sequence is longer than subject: 304 - 190

Fln protein: MMMATAFSASPGLIGSRLDTAMTKSEPSHSKLVKFSPSQSSIATKFLANSNDFSSVSLRIKGAYPAQATKTKEIEMPIDLPEHGKPEPTILVIDNYDSFTYNLCQYLGDLGAGFEVCRNDELTVEEVRKKNPRGILISPGPGTPHDSGISLQTVYELGPTIPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSLIHYDEKGEGGIFVGLPSPFTAGRYHSLVIEKESFPHDELEITAWTDDGLIMGVRHKKYRHIQAVQFHPESIITPEGKKIVQNFINIIEQHKILLTTGSCMGESPSIVG*

Protein Length: 305

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGACCTCAAAAAGTTTATAAGATGTTTCCGGTATTAAAAGTCTCGCTCAGTTCACAGGCATTAGAATTTCTCTGCAATTATC_-_ATGATGATGGCCACCGCATTTTCAGCTTCTCCTGGTTTGATAGGATCAAGGTTGGACACGGCCATGACTAAAAGTGAACCGAGTCACAGCAAACTCGTCAAGTTCAGCCCTTCCCAAAGCTCTATTGCCACAAAATTTCTGGCGAACTCAAATGATTTCTCTTCGGTTTCCTTGAGAATCAAAGGTGCTTACCCTGCACAAGCGACAAAAACCAAAGAGATCGAAATGCCCATTGATTTGCCAGAACATGGTAAACCCGAGCCGACTATTTTGGTGATCGATAACTATGATAGTTTCACTTACAATCTTTGCCAGTACCTTGGAGACCTTGGCGCTGGTTTTGAAGTCTGTCGAAATGATGAGTTGACAGTGGAAGAAGTAAGAAAGAAAAATCCAAGAGGAATTCTTATTTCACCTGGACCTGGCACACCGCATGATTCGGGAATTTCATTACAAACTGTTTATGAACTTGGACCTACAATCCCTTTATTTGGAGTTTGCATGGGCCTACAGTGCATTGGCGAAGCATTTGGAGGAAAAATCGTTCGTTCTCCTTTTGGAGTCATGCATGGAAAAAGTTCATTGATACATTATGATGAGAAAGGAGAAGGGGGCATATTTGTAGGACTTCCTAGCCCTTTCACGGCTGGCCGGTATCACAGCCTTGTGATTGAAAAGGAAAGCTTTCCCCACGATGAACTTGAGATTACAGCCTGGACTGATGATGGTCTTATCATGGGTGTTCGCCATAAGAAGTACAGACATATTCAGGCTGTTCAATTCCACCCAGAAAGTATTATCACTCCTGAAGGGAAAAAGATTGTTCAAAATTTTATCAACATTATAGAACAGCATAAGATTCTCCTGACTACTGGCTCATGTATGGGAGAAAGTCCGAGTATAGTAGGATAG___CAATGTTGAGAGGTAAAAAATTGGTTTATGCTTTAGGCATAAGTTGACAGTAAAACCAAAGAATTGGGGTGTTAACTTTTATCTGCTTGTTACAAATTTACGTAATTTAAATTATGTCAATAAAGAACAGGTCTGATTTAGGATGACAC

Fln Alignment:

Contig1820___ILVIDNYDSFTYNLCQYLGDLGAGFEVCRNDELTVEEVRKKNPRGILISPGPGTPHDSGISLQTVYELGPTIPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSLIHYDEKGEGGIFVGLPSPFTAGRYHSLVIEKESFPHDELEITAWTDDGLIMGVRHKKYRHIQAVQFHPESIITPEGKKIVQNFINII
P48261______________ILLIDNYDSFTYNLAQYLSELNIKVLVKRNDKITLDEIKNLNIQGIIISPCPGGPEDSGISQGIIKYLGNQIPILGVCLGHQTIGHVFGGKIIKAP-KLIHGKPSIIFHDGK---GVFQNLKNPITATRYHSLIIEKESCP-DELEITAWTEDGLIMGIQHKKYKQLQGIQFHPESILTESGKQILQNFINCL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
782			20	80	0.995493
981	11	88			0.923564
983		88	11		0.923564
984			88	11	0.923564
1062	88	11			0.923564
1063		11		88	0.923564
1064		11	88		0.923564
1082		85	14		0.993533
1085	85	14			0.993533
1086		14		85	0.993533
1087		14	85		0.993533
1089	14	85			0.993533
1098		20		80	0.995493
1099		25	75		0.996473
1101			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain