SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1808

Length: 2030 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene1808
TTTCAAGAAGCTTTCTTTCGAAATGGCGATCTCAAAATATGCAGCAGTGATGTCGTGCTTGTTCATCGCAGTTGTTGCATTAAACGTTGAGGCAAAAACGAGAAATTACAAATTTGACATAAAATTCAAGAACGTTACTCGTTTATGCCACACAAAGCCGATCGTTACAGCGAATGGCAAGTTTCCAGGCCCAACAATATATGCACGAGAAGGAGACACAGTCACTGTGAAAGTAACCAATCACGTGACATACAACGTGTCCATACATTGGCACGGGATAAGGCAGTTGCGGACTGGGTGGGCTGATGGGCCTGCTTATATTACGCAGTGCCCCATTCAAACAGGCCAAACTTTTGTATATAACTTTACAATCACAGGCCAGCGAGGCACACTTTTCTGGCACGCTCACATTCTCTGGTTACGTGCAACATTGTATGGGCCCATCGTCATTCTACCCAAAAAGGGGGTGCCGTACCCCTTCCCGGCGCCTGATAAAGAGGTTATATTGATTCTAGGTGAATGGTGGAATTCCGACACCGAGACCGTCATTAACCAAGCGATGAATTCAGGATCAGCACCGAATAGTTCGGATGCCCACACGATAAATGGGAAGCCGGGGCCACTCTTCTTTTGTCCTACTAAAGATACTTTTGCGTTATCAGTGGAGCCAGACAAGACATACCTGCTCAGAATCATCAACGCTGCGCTCAATCAGGAAGTCTTCTTCGGCGTGGCAAATCATCATCTGACAGTGGTGGAGGTCGACGCAGTGTACACAAAACCCTTCGAGACAAAGGCTATAGTAATTGCTCCAGGACAGACCACCAATGCTTTGCTCCACGCAGGCAAAAAAGCTGGAAGGTATTTCATGGCCGCCCGAGTATTCATGGACGCACCCATAACCGTAGATAACAAGACGGCAACGGCCATATTGCAATACACAGGAAGCTCAAACTCTCTGAACCCCGTATTGCCTCTAATTCCTGCGCTCAATGATACCGCGTTCTCATCTAATTTTAGCAACGCTCTGAAAAGTCTAAATTCTCCCCAGTATCCTGCTAAAGTTCCCCAATCAATAGATCGCAATCTCTTCTTTACTGTTGGGCTAGCCCTAAATTCGTGCCCAACCTGCAACAACGGTTCGCGCCCTGCTGCATCTGTGAACAATATAAGCTTCACTATGCCCACCGTTGCTCTTCTTCAATCACACTACTTCAACATCAGTGGCGTCTTCACTACCGATTTCCCAGATAATCCCCCTGCAACTTTTAACTACACTGGCACACCGCCAAAGAATATGCAATCCTCAAATGGAACCAGACTTAGCCGCATACCCTTCAATTCCACAGTGCAGTTGGTGCTTCAGGACACAAGCATGCTGACAGTGGAGAACCATCCAGTCCATCTACATGGCTTCAATTTCTTCATTGTTGGAAGAGGGTTTGGGAACTATGATCCTAAGAAGGACCCTGCCAAATTCAATCTTGTGGATCCTCCTGAGCGCAACACTGTCGGCGTGCCCACTGGTGGCTGGACGGTTATCCGGTTCAGAGCCGACAATCCAGGTGTCTGGTTCATGCATTGTCATCTGGAAGTACACACCACCTGGGGGCTAAAGATGGCATTTTTGGTAGAGAACGGGCACGGTACGGAACAATCGATTCTGCCTCCCCCAAAAGACCTGCCCAAGTGCTAGTCATACATTCTGAAATTCTTCATGAATATTGTTAATAACTTTCGAATTGTTATGACATCTCTTAAATAATTAACTGTGTTCTCGACATCACGAACATACTGATTTTCCTTGTAGCAGCAACACCAGTGGATTTCTCTGGAGATTTTGTGATGTCGTTCAAAATGTTTGTGTGAGAATCGCCATACTCCAAAAAATTTCAATAAGTTTGGTCTCCGACGGTTGGATTTGTTTAATAGATCATTGTATTAGATATGTAACTTTACATCAATTTGTAAAGCTTGACGATTATTGTCGAACTGTTAATATTACATGTTGCAAGGAAATTTCTTCTTTT

Ace file of the UniGene sp_v2.0_unigene1808

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUI0_PINTA	-	-	94%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	94%
Blast2go	laccase (diphenol oxidase)-like protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Laccase.	EC:1.10.3.2	-	0.0	81%
Blast2go	L-ascorbate oxidase.	EC:1.10.3.3	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		0.0	81%
Blast2go	Metabolic pathways	01100		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	lignin catabolic process	GO:0046274	Biological Process	81%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	laccase activity	GO:0008471	Molecular Function	81%
Blast2go	copper ion binding	GO:0005507	Molecular Function	81%
Blast2go	L-ascorbate oxidase activity	GO:0008447	Molecular Function	81%
Blast2go	endomembrane system	GO:0012505	Cellular Component	81%
Blast2go	apoplast	GO:0048046	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Laccase	IPR017761	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9AUI0

Fln msg:

Fln protein: MAISKYAAVMSCLFIAVVALNVEAKTRNYKFDIKFKNVTRLCHTKPIVTANGKFPGPTIYAREGDTVTVKVTNHVTYNVSIHWHGIRQLRTGWADGPAYITQCPIQTGQTFVYNFTITGQRGTLFWHAHILWLRATLYGPIVILPKKGVPYPFPAPDKEVILILGEWWNSDTETVINQAMNSGSAPNSSDAHTINGKPGPLFFCPTKDTFALSVEPDKTYLLRIINAALNQEVFFGVANHHLTVVEVDAVYTKPFETKAIVIAPGQTTNALLHAGKKAGRYFMAARVFMDAPITVDNKTATAILQYTGSSNSLNPVLPLIPALNDTAFSSNFSNALKSLNSPQYPAKVPQSIDRNLFFTVGLALNSCPTCNNGSRPAASVNNISFTMPTVALLQSHYFNISGVFTTDFPDNPPATFNYTGTPPKNMQSSNGTRLSRIPFNSTVQLVLQDTSMLTVENHPVHLHGFNFFIVGRGFGNYDPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGHGTEQSILPPPKDLPKC*

Protein Length: 559

Fln nts: TTTCAAGAAGCTTTCTTTCGAA_-_ATGGCGATCTCAAAATATGCAGCAGTGATGTCGTGCTTGTTCATCGCAGTTGTTGCATTAAACGTTGAGGCAAAAACGAGAAATTACAAATTTGACATAAAATTCAAGAACGTTACTCGTTTATGCCACACAAAGCCGATCGTTACAGCGAATGGCAAGTTTCCAGGCCCAACAATATATGCACGAGAAGGAGACACAGTCACTGTGAAAGTAACCAATCACGTGACATACAACGTGTCCATACATTGGCACGGGATAAGGCAGTTGCGGACTGGGTGGGCTGATGGGCCTGCTTATATTACGCAGTGCCCCATTCAAACAGGCCAAACTTTTGTATATAACTTTACAATCACAGGCCAGCGAGGCACACTTTTCTGGCACGCTCACATTCTCTGGTTACGTGCAACATTGTATGGGCCCATCGTCATTCTACCCAAAAAGGGGGTGCCGTACCCCTTCCCGGCGCCTGATAAAGAGGTTATATTGATTCTAGGTGAATGGTGGAATTCCGACACCGAGACCGTCATTAACCAAGCGATGAATTCAGGATCAGCACCGAATAGTTCGGATGCCCACACGATAAATGGGAAGCCGGGGCCACTCTTCTTTTGTCCTACTAAAGATACTTTTGCGTTATCAGTGGAGCCAGACAAGACATACCTGCTCAGAATCATCAACGCTGCGCTCAATCAGGAAGTCTTCTTCGGCGTGGCAAATCATCATCTGACAGTGGTGGAGGTCGACGCAGTGTACACAAAACCCTTCGAGACAAAGGCTATAGTAATTGCTCCAGGACAGACCACCAATGCTTTGCTCCACGCAGGCAAAAAAGCTGGAAGGTATTTCATGGCCGCCCGAGTATTCATGGACGCACCCATAACCGTAGATAACAAGACGGCAACGGCCATATTGCAATACACAGGAAGCTCAAACTCTCTGAACCCCGTATTGCCTCTAATTCCTGCGCTCAATGATACCGCGTTCTCATCTAATTTTAGCAACGCTCTGAAAAGTCTAAATTCTCCCCAGTATCCTGCTAAAGTTCCCCAATCAATAGATCGCAATCTCTTCTTTACTGTTGGGCTAGCCCTAAATTCGTGCCCAACCTGCAACAACGGTTCGCGCCCTGCTGCATCTGTGAACAATATAAGCTTCACTATGCCCACCGTTGCTCTTCTTCAATCACACTACTTCAACATCAGTGGCGTCTTCACTACCGATTTCCCAGATAATCCCCCTGCAACTTTTAACTACACTGGCACACCGCCAAAGAATATGCAATCCTCAAATGGAACCAGACTTAGCCGCATACCCTTCAATTCCACAGTGCAGTTGGTGCTTCAGGACACAAGCATGCTGACAGTGGAGAACCATCCAGTCCATCTACATGGCTTCAATTTCTTCATTGTTGGAAGAGGGTTTGGGAACTATGATCCTAAGAAGGACCCTGCCAAATTCAATCTTGTGGATCCTCCTGAGCGCAACACTGTCGGCGTGCCCACTGGTGGCTGGACGGTTATCCGGTTCAGAGCCGACAATCCAGGTGTCTGGTTCATGCATTGTCATCTGGAAGTACACACCACCTGGGGGCTAAAGATGGCATTTTTGGTAGAGAACGGGCACGGTACGGAACAATCGATTCTGCCTCCCCCAAAAGACCTGCCCAAGTGCTAG___TCATACATTCTGAAATTCTTCATGAATATTGTTAATAACTTTCGAATTGTTATGACATCTCTTAAATAATTAACTGTGTTCTCGACATCACGAACATACTGATTTTCCTTGTAGCAGCAACACCAGTGGATTTCTCTGGAGATTTTGTGATGTCGTTCAAAATGTTTGTGTGAGAATCGCCATACTCCAAAAAATTTCAATAAGTTTGGTCTCCGACGGTTGGATTTGTTTAATAGATCATTGTATTAGATATGTAACTTTACATCAATTTGTAAAGCTTGACGATTATTGTCGAACTGTTAATATTACATGTTGCAAGGAAATTTCTTCTTTT

Fln Alignment:

Contig1808___MAISKYAAVMSCLFIAVVALNVEAKTRNYKFDIKFKNVTRLCHTKPIVTANGKFPGPTIYAREGDTVTVKVTNHVTYNVSIHWHGIRQLRTGWADGPAYITQCPIQTGQTFVYNFTITGQRGTLFWHAHILWLRATLYGPIVILPKKGVPYPFPAPDKEVILILGEWWNSDTETVINQAMNSGSAPNSSDAHTINGKPGPLFFCPTKDTFALSVEPDKTYLLRIINAALNQEVFFGVANHHLTVVEVDAVYTKPFETKAIVIAPGQTTNALLHAGKKAGRYFMAARVFMDAPITVDNKTATAILQYTGSSNSLNPVLPLIPALNDTAFSSNFSNALKSLNSPQYPAKVPQSIDRNLFFTVGLALNSCPTCNNGSRPAASVNNISFTMPTVALLQSHYFNISGVFTTDFPDNPPATFNYTGTPPKNMQSSNGTRLSRIPFNSTVQLVLQDTSMLTVENHPVHLHGFNFFIVGRGFGNYDPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGHGTEQSILPPPKDLPKC
Q9AUI0______________MVISKYAAAMSCLLIAVVALNVEAETRHYKFDIKFKNVTRLCHTEPIVTANGKFPGPTIHAREGDTVTVKVTNHVTYNVSIHWHGIRQLRTGWADGPAYITQCPIQTGQTFVYNFTITGQRGTLFWHAHILWLRATLYGPIVILPPKG-PYPFPKPHKEVILILGEWWNSDTETVINQAMNSGLAPNSSDSHTINGKAGPLFYCPTKDTFALSVEPDKTYLLRIIKA-LNQEVFFGVANHHLTVVEVDAVYTKPFETKAIVSAPGQTTNALLHTDKKAGRYFMAARVFMDAPIAVDNKTATAILQYTGSSNSLNPVMPLIPALNDTAFSSNFSNALKSLNSPQYPAKVPQSIDRNLFFTVGLALNACPTCINGARPAASVNNISFTMPTIALLQSHYFNISGVFTTDFPDNPPATFNYTGTPPKNLQSSNGTRLSRIPFNSTVQLVLQDTSALTVENHPVHLHGFNFFIVGRGFGNYNPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGHGPEQSILPPGKDLPQC

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
485	25		75		0.996473
668		85		14	0.993533
1100	10		90		0.90298
1160		27	72		1.0
1287		87		12	0.992554
1292	87		12		0.992554
1293	87			12	0.992554
1295	87			12	0.992554
1297			12	87	0.992554
1298	87			12	0.992554
1522		82		17	1.0
1537	11		88		0.999937
1539		11		88	0.999937
1540	11			88	0.999937
1546	11		88		0.999952
1649	16	83			0.994512
1673		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain