SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1792

Length: 2770 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene1792
AAAACTGTGGGAGGGTTTTCCAGAAGCTCAACTACAAGGCCTACGTGAAAATGCTTCATCTATATGTTCCCCTCTTCTATATGAACCTCAACCAGAGGTAAGAGCGGCTGCGGTCTTTGCATTAGGAACTCTTCTATCTCTTGGAACTGAATCCTTAAGGGATGGCCCCGTATATGATGACTATGATGATGATGATGAAAAAGTAAAGCAGAGCAAGAAATTGCAAAACATCTCCTCAAAGTACTTTCTGATGCAAGTCCACTTGTCCGGGCTGAGCTTGCAGTAGCCCTATCACGCTTTGCTGTTGGACATAACAAGCATCTGAAGTCAATGGCTGCTGCATATTTGAAGCCACCATCCAATTCCACTTTGAATTCTTTACCATCATTGGCAAACATTAGAAGTCCAAATAGCAGTTATACAAATGCAAGCCAATTTATGTTATCCTCTAATGCAATTTCTGCTAATCATGGTCCGGTTTTAAGAGTAGGAAGTGACAACAATGCTTCAACTCGTGAGGGAAGAGTATCTACTAGCAGCCCACTGGCTTCAACTAGTATTATGCATGGCTCTCCTTCATCTGATGGTTCATCCCAGAAGTCAGAGTCTAGGATGTCATTGCCTGATGCTGCCAGTAATGGGAATTTGAGATTACCAAGATCCAAATCGATGGATAATGCAGTATATGCACAATGTGTTGCTGCCATGTATGCTTTGGCAAGGGATCCAGCACCATGGGTTGCAAGTTTGGGACGACAAATACTAGGAACAATTGGTGTTGAGCCAGTTGTAGCAAAGTCAGCCAGGCCTACAGGTGGGGCTGGACAGCACCGGGATTCTTCTGTTGCATCTGTTCCTCCTAGTTTACCTGGATTGGCACGTTCATATTCTTGGTTAGATTTAAATTCAGGAAATCTACCTATTACATTTAGAACGCCTCCTGCAAGTCCCCCAACCCGACAGAGCTACTTAACTGGAATGCGTAGAGTATGCTCCTTGGAATTCGGTCCTCACATGCGCACAGCTGCAGATGCTGGTTTAGCAGACTCAATCATAGTCCCTGGTGGATCATCAGCCTCTGAAAGGGGCCTCCTTCCACAATCAACTATCTATAGTTGGAGTTGTGGCCATTACTCAAGGCCTCTGTTGGCAGCTTCTGATGATGAGGAAGCATTAGTAAGACGGGAAGAAAGAGAGAGGCTAACTCTTGAAAGAATTGCAAAATGTCAACACTCTAATGTAAGCAGAATCAGTGATCAGATTGCAAAATTTCCGGAAACAGGTTGTGAGGCTGGGCTGAAATCTGTATTGCTACATCCTTTCATTCCTATTGTTATTGCTGCTGACGAGAAGGAGACTGTAAGGATATGGAACTATGATGAAGAAGCACAGCTGAATGTTTTTGACAACCACGATGGCCCGAACAGGGGAATTTCCAAGCTCTGTCTTGTGAATGAGCTGGATGACAGCATGCTTCTTGTTGCTTCAAATGATGGGAGTGTTCGTGTTTGGAAAGATTACACTCAACGAGATAAACATAAGCTTGCAACAGCGTGGCAAACAACTCAAGGGCATAGACCTGGTGCTCGCAGTGTTAATGCTGTGGTTGACTGGCAGCAGTTGACAGGGTTTCTGTATGCATCCGGGGAGATATCCTCTATCATGGTTTGGGATCTTCGTATAGAACAACTAGCTTGCAGTATCCCATCTTCTACAGAAAGCTGCATTTCAGCCCTGTCTGCATCTCAGGTTCATGATCGACAGCTAGTTGCAGGTTCTGGAGATGGATCTGTCAGACTCTATGATATCAGAGCTAAGGAAATGATTGTTTGTACAGCAAGGCCTCATGGTCATAGAATAGTAGGAATTGATTTTCAACCAGGCTTGGATCCAGCAAAGATAGTGAGTGCTTCTCAAGCCGGGGATATCCAGTTTCTAGACATAAGGAACAGCAACAGGCCTTATTTGTCCATTGATGCTCACAGGGGCTCGCTTACTGCTTTGGCTGTTCATAGACATGCTCCAGTGATTGCGAGTGGTTCTGCAAAGCAGTACATTAAGGTGTTTAGTATAACTGGTGAGCAGTTAAATATGGTTCGCTATCACAACAGCTTTATGGGGCAAAGAATAGGACCTGTGAGTTGCCTATCTTTTCATCCATACAATATACAGCTTGCTGCGGGAGCAACAGATGGTTTTGTGTCCATTTACTCTGGAGAAAATTTACAGGCGAGATAGTACTGAAAAGGCAGTCTTTGTTCCCCAGCCCTGTTAAATTATCGTGGCCTGTGTAACAAGAGGGAAGTTGTAATTGTGTCTTTGGTGGTGTTGTCCTGGCTACAAAAATTCTTTACAAATAAGTTTTAGATGGGTAAGGTTCTTGTTACACAACATTGTTGACCCATCATCTTCTCTTGTCCTCGCATTGGAATAACTTCCTTCAGAGGTTTAAGAGGATTGGGCTTTTGTCAAATATGTATATTTATATTCATTGTTCTTTTGGCAAGAGGTGATTCAAGGTTTCGTGCCTCTCATGGAGCATGTCTTTGTTTAGTTTGGGCCGTTTACAGAATAATGTGTGCGAAAGTGACAAAGCATGTAAATATCTCTTGTTTCATTTTGTATAACATTTCCAGCGAAGTGGTTTGCAACCTATGGTGTCATATGTTTATAGCATTTATTGTATTTAAAGTGATCAGGAATGTAGTGTCAACTCCTTTAAGTCACTGTCTCATAAAATCAGTAGGGCAATCTAGTTCTATTCTGACTA

Ace file of the UniGene sp_v2.0_unigene1792

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	regulatory associated protein of mTOR [Arabidopsis thaliana] sp\|Q93YQ1.1\|RTOR1_ARATH RecName: Full=Regulatory-associated protein of TOR 1; AltName: Full=Protein RAPTOR 1; AltName: Full=Protein RAPTOR 1B; Short=AtRaptor1b gb\|AAL24320.1\| Unknown protein [Ar	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	22%
Blast2go	regulatory-associated protein of tor 1-like	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	72%
Blast2go	cell growth	GO:0016049	Biological Process	72%
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	72%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Regulatory associated protein of TOR	IPR004083	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQY8

Fln msg: your sequence is longer than subject: 636 - 326

Fln protein: MAAAYLKPPSNSTLNSLPSLANIRSPNSSYTNASQFMLSSNAISANHGPVLRVGSDNNASTREGRVSTSSPLASTSIMHGSPSSDGSSQKSESRMSLPDAASNGNLRLPRSKSMDNAVYAQCVAAMYALARDPAPWVASLGRQILGTIGVEPVVAKSARPTGGAGQHRDSSVASVPPSLPGLARSYSWLDLNSGNLPITFRTPPASPPTRQSYLTGMRRVCSLEFGPHMRTAADAGLADSIIVPGGSSASERGLLPQSTIYSWSCGHYSRPLLAASDDEEALVRREERERLTLERIAKCQHSNVSRISDQIAKFPETGCEAGLKSVLLHPFIPIVIAADEKETVRIWNYDEEAQLNVFDNHDGPNRGISKLCLVNELDDSMLLVASNDGSVRVWKDYTQRDKHKLATAWQTTQGHRPGARSVNAVVDWQQLTGFLYASGEISSIMVWDLRIEQLACSIPSSTESCISALSASQVHDRQLVAGSGDGSVRLYDIRAKEMIVCTARPHGHRIVGIDFQPGLDPAKIVSASQAGDIQFLDIRNSNRPYLSIDAHRGSLTALAVHRHAPVIASGSAKQYIKVFSITGEQLNMVRYHNSFMGQRIGPVSCLSFHPYNIQLAAGATDGFVSIYSGENLQAR*

Protein Length: 637

Fln nts: AAAACTGTGGGAGGGTTTTCCAGAAGCTCAACTACAAGGCCTACGTGAAAATGCTTCATCTATATGTTCCCCTCTTCTATATGAACCTCAACCAGAGGTAAGAGCGGCTGCGGTCTTTGCATTAGGAACTCTTCTATCTCTTGGAACTGAATCCTTAAGGGATGGCCCCGTATATGATGACTATGATGATGATGATGAAAAAGTAAAGCAGAGCAAGAAATTGCAAAACATCTCCTCAAAGTACTTTCTGATGCAAGTCCACTTGTCCGGGCTGAGCTTGCAGTAGCCCTATCACGCTTTGCTGTTGGACATAACAAGCATCTGAAGTCA_-_ATGGCTGCTGCATATTTGAAGCCACCATCCAATTCCACTTTGAATTCTTTACCATCATTGGCAAACATTAGAAGTCCAAATAGCAGTTATACAAATGCAAGCCAATTTATGTTATCCTCTAATGCAATTTCTGCTAATCATGGTCCGGTTTTAAGAGTAGGAAGTGACAACAATGCTTCAACTCGTGAGGGAAGAGTATCTACTAGCAGCCCACTGGCTTCAACTAGTATTATGCATGGCTCTCCTTCATCTGATGGTTCATCCCAGAAGTCAGAGTCTAGGATGTCATTGCCTGATGCTGCCAGTAATGGGAATTTGAGATTACCAAGATCCAAATCGATGGATAATGCAGTATATGCACAATGTGTTGCTGCCATGTATGCTTTGGCAAGGGATCCAGCACCATGGGTTGCAAGTTTGGGACGACAAATACTAGGAACAATTGGTGTTGAGCCAGTTGTAGCAAAGTCAGCCAGGCCTACAGGTGGGGCTGGACAGCACCGGGATTCTTCTGTTGCATCTGTTCCTCCTAGTTTACCTGGATTGGCACGTTCATATTCTTGGTTAGATTTAAATTCAGGAAATCTACCTATTACATTTAGAACGCCTCCTGCAAGTCCCCCAACCCGACAGAGCTACTTAACTGGAATGCGTAGAGTATGCTCCTTGGAATTCGGTCCTCACATGCGCACAGCTGCAGATGCTGGTTTAGCAGACTCAATCATAGTCCCTGGTGGATCATCAGCCTCTGAAAGGGGCCTCCTTCCACAATCAACTATCTATAGTTGGAGTTGTGGCCATTACTCAAGGCCTCTGTTGGCAGCTTCTGATGATGAGGAAGCATTAGTAAGACGGGAAGAAAGAGAGAGGCTAACTCTTGAAAGAATTGCAAAATGTCAACACTCTAATGTAAGCAGAATCAGTGATCAGATTGCAAAATTTCCGGAAACAGGTTGTGAGGCTGGGCTGAAATCTGTATTGCTACATCCTTTCATTCCTATTGTTATTGCTGCTGACGAGAAGGAGACTGTAAGGATATGGAACTATGATGAAGAAGCACAGCTGAATGTTTTTGACAACCACGATGGCCCGAACAGGGGAATTTCCAAGCTCTGTCTTGTGAATGAGCTGGATGACAGCATGCTTCTTGTTGCTTCAAATGATGGGAGTGTTCGTGTTTGGAAAGATTACACTCAACGAGATAAACATAAGCTTGCAACAGCGTGGCAAACAACTCAAGGGCATAGACCTGGTGCTCGCAGTGTTAATGCTGTGGTTGACTGGCAGCAGTTGACAGGGTTTCTGTATGCATCCGGGGAGATATCCTCTATCATGGTTTGGGATCTTCGTATAGAACAACTAGCTTGCAGTATCCCATCTTCTACAGAAAGCTGCATTTCAGCCCTGTCTGCATCTCAGGTTCATGATCGACAGCTAGTTGCAGGTTCTGGAGATGGATCTGTCAGACTCTATGATATCAGAGCTAAGGAAATGATTGTTTGTACAGCAAGGCCTCATGGTCATAGAATAGTAGGAATTGATTTTCAACCAGGCTTGGATCCAGCAAAGATAGTGAGTGCTTCTCAAGCCGGGGATATCCAGTTTCTAGACATAAGGAACAGCAACAGGCCTTATTTGTCCATTGATGCTCACAGGGGCTCGCTTACTGCTTTGGCTGTTCATAGACATGCTCCAGTGATTGCGAGTGGTTCTGCAAAGCAGTACATTAAGGTGTTTAGTATAACTGGTGAGCAGTTAAATATGGTTCGCTATCACAACAGCTTTATGGGGCAAAGAATAGGACCTGTGAGTTGCCTATCTTTTCATCCATACAATATACAGCTTGCTGCGGGAGCAACAGATGGTTTTGTGTCCATTTACTCTGGAGAAAATTTACAGGCGAGATAG___TACTGAAAAGGCAGTCTTTGTTCCCCAGCCCTGTTAAATTATCGTGGCCTGTGTAACAAGAGGGAAGTTGTAATTGTGTCTTTGGTGGTGTTGTCCTGGCTACAAAAATTCTTTACAAATAAGTTTTAGATGGGTAAGGTTCTTGTTACACAACATTGTTGACCCATCATCTTCTCTTGTCCTCGCATTGGAATAACTTCCTTCAGAGGTTTAAGAGGATTGGGCTTTTGTCAAATATGTATATTTATATTCATTGTTCTTTTGGCAAGAGGTGATTCAAGGTTTCGTGCCTCTCATGGAGCATGTCTTTGTTTAGTTTGGGCCGTTTACAGAATAATGTGTGCGAAAGTGACAAAGCATGTAAATATCTCTTGTTTCATTTTGTATAACATTTCCAGCGAAGTGGTTTGCAACCTATGGTGTCATATGTTTATAGCATTTATTGTATTTAAAGTGATCAGGAATGTAGTGTCAACTCCTTTAAGTCACTGTCTCATAAAATCAGTAGGGCAATCTAGTTCTATTCTGACTA

Fln Alignment:

Contig1792___VIAADEKETVRIWNYDEEAQLNVFDNHDGPNRGIS-----KLCLVNELDDSMLLVASNDGSVRVWKDYTQRDKHKLATAWQTTQGHRPGARS-VNAVVDWQQLTGFLYASGEISSIMVWDLRIEQLACSIPSST--ESCISALSASQVHDRQLVAGSGDGSVRLYDIRAKEMI--VCTARPHGHRIVGIDFQPGLDPAKIVSASQAGDIQFLDIRNSNRPYLSIDAHRGSLTALAVHRHAPVIASGSAKQYIKVFSITGEQLNMVRYHNSFMGQRIGPVSCLSFHPYNIQLAAGATDGFVSIYSGEN
B8LQY8______________LITSSADQTVKLWNVETGTQLFSF-NFESPARAVDLAEGDKLVVITT--DPFMELPSAIHIKRIEKDLSKQSADSILTI--------TGIKGRINRAV-WGPLNRTIISGGEDAVVRIWDSETGKLLRESEKETGHQKPITSLFKS-ADGSHFLTGSLDKSAKLWDIRTLTLIKTYVTERP----VNAVAISPLLDHVVIGGGQEASHVTTTDRR------------AGKFEAKFFHK------------------ILEEEIGGVKGH-------FGPINALAFNPDGRSFASGGEDGYVRLHHFDN

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1730	83		16		0.994512
1758	83		16		0.994512
1890		12		87	0.992554
1933	12	87			0.992554
1936			87	12	0.992554
1983	20	80			0.995493
2022	90		10		0.90298
2105			12	87	0.992554
2176	21		78		1.0
2344	90		10		0.90298
2431		12		87	0.999964
2433			86	13	0.999973
2434	86	13			0.999973
2435	86		13		0.999973
2437	86		13		0.999973
2442		86	13		0.999973
2448		14	85		0.999981
2449	84			15	0.999986
2450		23	76		1.0
2451	15		84		0.999986
2469		10		90	0.90298
2644	14		85		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
183	198	ATG ATG ATG ATG ATG A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain