SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1765

Length: 2021 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene1765
AATGGGGAGGGATGTTGTCTGCAGCTTCAGGACTGCATCTGATTGGGAGAAGAATTGGTTCTTTTGGTTATTGAACCTCCCAGAGCCCCAATCTGTATTAAATCTGAACTGTAGTAAATCCCATTGCTTTACATTAGCAATTTCCAATCAGAATTCTTGTTGATGCAAGCCCGAGATGATCCCTAGGTGAAGTTGAAAATTGGTTTTGCATCGATCTCAGGGATGGTTAGACAGAGCTGAAAGCGAAAAGAAGTAGTTACTGGTCTGCCTGCTGGCAGATTTCTCATTTTGTTTCAAGTACAGTTGGAATCATAGCTATCATCCAAATTGGATTGATTGGGTCTTTACATTTGCAAAAGAAATGGCCAAAGGGGAACCAGTATACTCAGAGTTTCCTCCTATTGACAAATGCAGCTCAGTTGGAAGAGAAAAACATATTGTTGCAGCAGACCTGGATGGAACACTTCTTAGAGGAAGGAGTTCATTTCCCTACTTTGCCCTAACGGCATTTGAGACAGGTGGAATAGTCCGTCTGTTGGGATTGGTGTTAGCTTCCCCTTTGGCAGGTTTGCTCTACTACTTAATATCTGAAACTGCTGGAATCCAAGTTTTGATATTTGTTACTTTTGTTGGAGTAAGAATAGAGGACATTGAATCTGTAGCCAGTGCAGTCCTACCCAAATTCTACTCAGAGGATCTGCATTCACAGTCATGGAAAATCTTCTCAGCCTGTGGTAAGAGATGTGTTTTAACTGCAAATCCCCGCATTATGGTCGAGCCTTTTCCTGAGAGAGTATCTGGGTGCAGACATGGTGATTGGGACTGAGATTAATAGTTTCAGAGGACGTGCAACTGGTTTTGTGAAAAGGCCTGGGGTTCTGGTAGGATCAGAGAAGGCCAAGGCCTTGGTAAGGGCTTTTGGTTATGATAATTTGCCTGATATTGGTCTTGGTGATAGGAAGACAGATTACCCTTTCATCAGACTCTGCAAGGAAGGCTATATGGTTCATGCAAATCCATTCGCAGAGGCTGTGGACAGGAAGAAGCTGCCAAAGCCCTTAGTTTTCCATGATGGTAGACTGGTGCAACGTCCAACGCCTCTTAAAACTCTTATTATCATTCTCTGGATCCCTGTAGGCTTTCTTCTAGCTTGCCTCAGGATTGCAGCAGGAGCACTTCTTCCCATGTCAATGACCTACTATGCATTCTGGTGCCTCGGAGTTAAGGTGACCATAAAAGGGACACCACCCCCTGATATGAGAGAAAAGGATGATATCAATGGAAGAAAGGGAGTTCTGTTTGTATGTTCACACAGAACGCTTTTGGATCCAATATTTCTATCTACGGCCCTGGGGAGGCCTATAGCTGCAGTAACATACTCAGTTTCCAGGCTCTCTGAGTTCCTTTCACCTATCAAAACTGTTCGGCTTAGTAGGGACAGAGTTAAGGATGCTAAGATGATCAAAGAACTACTGGAAGAAGGGGATATGGTCCTCTGTCCAGAAGGGACTACTTGCAGAGAGCCCTTTCTGTTGAGATTCAGTGCATTGTTTGCGGAGTTAACAGACCAAATTGTGCCTGTAGCCATGAACAACAAGATGAGTCTGTTCCATGGAACCACTGCTAGGGGATGGAAGGGAATGGATCCTTTCTACTTCTTCATGAATCCATCTCCAACCTATGAGGTCACTTTCCTTAATCAGCTTCCTCTGGAGCTGACTTGTACTGGAGGTAAGAGCTCACATGAGGTTGCAAATTACATCCAGAGGGTATTGGCAGCTACCTTATCGTATGAATGCACAAGTCTTACTCGGAAGGATAAGTACAGAGTCTTGGCTGGAAATGACGGTGTTGTTGTGAAAAAACCAAGAACTTTGTGGGCTAGTGATCACTTCAGGATGTTTTGTCATTGTAATCAAGGTGCAATAAGGAAAATTATAATTTTAGTGCAGCTAATATACATTAAAATTTCCTTCATGTAAGTAATTTTATAAGGTCATCTGTAGCAAATTGGCAAATTT

Ace file of the UniGene sp_v2.0_unigene1765

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycerol-3-phosphate acyltransferase [Arabidopsis thaliana] sp\|Q9LMM0.1\|GPAT4_ARATH RecName: Full=Glycerol-3-phosphate acyltransferase 4; Short=AtGPAT4 gb\|AAF81319.1\|AC061957_15 Contains similarity to a hypothetical protein F16M14.4 gi\|7485589 from Arabid	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	er glycerol-phosphate acyltransferase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glycerol-3-phosphate O-acyltransferase.	EC:2.3.1.15	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Glycerolipid metabolism	00561	83%
Blast2go	Glycerophospholipid metabolism	00564	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	83%
Blast2go	glycerol-3-phosphate O-acyltransferase activity	GO:0004366	Molecular Function	83%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L18e	IPR000039	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Phospholipid/glycerol acyltransferase	IPR002123	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXM0

Fln msg: Overlapping hits, possible frame ERROR between 784 and 762,

Fln protein: MAKGEPVYSEFPPIDKCSSVGREKHIVAADLDGTLLRGRSSFPYFALTAFETGGIVRLLGLVLASPLAGLLYYLISETAGIQVLIFVTFVGVRIEDIESVASAVLPKFYSEDLHSQSWKIFSACGKRCVLTANxxxxxxxxxLREYLGADMVIGTEINSFRGRATGFVKRPGVLVGSEKAKALVRAFGYDNLPDIGLGDRKTDYPFIRLCKEGYMVHANPFAEAVDRKKLPKPLVFHDGRLVQRPTPLKTLIIILWIPVGFLLACLRIAAGALLPMSMTYYAFWCLGVKVTIKGTPPPDMREKDDINGRKGVLFVCSHRTLLDPIFLSTALGRPIAAVTYSVSRLSEFLSPIKTVRLSRDRVKDAKMIKELLEEGDMVLCPEGTTCREPFLLRFSALFAELTDQIVPVAMNNKMSLFHGTTARGWKGMDPFYFFMNPSPTYEVTFLNQLPLELTCTGGKSSHEVANYIQRVLAATLSYECTSLTRKDKYRVLAGNDGVVVKKPRTLWASDHFRMFCHCNQGAIRKIIILVQLIYIKISFM*

Protein Length: 542

Fln nts: AATGGGGAGGGATGTTGTCTGCAGCTTCAGGACTGCATCTGATTGGGAGAAGAATTGGTTCTTTTGGTTATTGAACCTCCCAGAGCCCCAATCTGTATTAAATCTGAACTGTAGTAAATCCCATTGCTTTACATTAGCAATTTCCAATCAGAATTCTTGTTGATGCAAGCCCGAGATGATCCCTAGGTGAAGTTGAAAATTGGTTTTGCATCGATCTCAGGGATGGTTAGACAGAGCTGAAAGCGAAAAGAAGTAGTTACTGGTCTGCCTGCTGGCAGATTTCTCATTTTGTTTCAAGTACAGTTGGAATCATAGCTATCATCCAAATTGGATTGATTGGGTCTTTACATTTGCAAAAGAA_-_ATGGCCAAAGGGGAACCAGTATACTCAGAGTTTCCTCCTATTGACAAATGCAGCTCAGTTGGAAGAGAAAAACATATTGTTGCAGCAGACCTGGATGGAACACTTCTTAGAGGAAGGAGTTCATTTCCCTACTTTGCCCTAACGGCATTTGAGACAGGTGGAATAGTCCGTCTGTTGGGATTGGTGTTAGCTTCCCCTTTGGCAGGTTTGCTCTACTACTTAATATCTGAAACTGCTGGAATCCAAGTTTTGATATTTGTTACTTTTGTTGGAGTAAGAATAGAGGACATTGAATCTGTAGCCAGTGCAGTCCTACCCAAATTCTACTCAGAGGATCTGCATTCACAGTCATGGAAAATCTTCTCAGCCTGTGGTAAGAGATGTGTTTTAACTGCAAATxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGAGAGAGTATCTGGGTGCAGACATGGTGATTGGGACTGAGATTAATAGTTTCAGAGGACGTGCAACTGGTTTTGTGAAAAGGCCTGGGGTTCTGGTAGGATCAGAGAAGGCCAAGGCCTTGGTAAGGGCTTTTGGTTATGATAATTTGCCTGATATTGGTCTTGGTGATAGGAAGACAGATTACCCTTTCATCAGACTCTGCAAGGAAGGCTATATGGTTCATGCAAATCCATTCGCAGAGGCTGTGGACAGGAAGAAGCTGCCAAAGCCCTTAGTTTTCCATGATGGTAGACTGGTGCAACGTCCAACGCCTCTTAAAACTCTTATTATCATTCTCTGGATCCCTGTAGGCTTTCTTCTAGCTTGCCTCAGGATTGCAGCAGGAGCACTTCTTCCCATGTCAATGACCTACTATGCATTCTGGTGCCTCGGAGTTAAGGTGACCATAAAAGGGACACCACCCCCTGATATGAGAGAAAAGGATGATATCAATGGAAGAAAGGGAGTTCTGTTTGTATGTTCACACAGAACGCTTTTGGATCCAATATTTCTATCTACGGCCCTGGGGAGGCCTATAGCTGCAGTAACATACTCAGTTTCCAGGCTCTCTGAGTTCCTTTCACCTATCAAAACTGTTCGGCTTAGTAGGGACAGAGTTAAGGATGCTAAGATGATCAAAGAACTACTGGAAGAAGGGGATATGGTCCTCTGTCCAGAAGGGACTACTTGCAGAGAGCCCTTTCTGTTGAGATTCAGTGCATTGTTTGCGGAGTTAACAGACCAAATTGTGCCTGTAGCCATGAACAACAAGATGAGTCTGTTCCATGGAACCACTGCTAGGGGATGGAAGGGAATGGATCCTTTCTACTTCTTCATGAATCCATCTCCAACCTATGAGGTCACTTTCCTTAATCAGCTTCCTCTGGAGCTGACTTGTACTGGAGGTAAGAGCTCACATGAGGTTGCAAATTACATCCAGAGGGTATTGGCAGCTACCTTATCGTATGAATGCACAAGTCTTACTCGGAAGGATAAGTACAGAGTCTTGGCTGGAAATGACGGTGTTGTTGTGAAAAAACCAAGAACTTTGTGGGCTAGTGATCACTTCAGGATGTTTTGTCATTGTAATCAAGGTGCAATAAGGAAAATTATAATTTTAGTGCAGCTAATATACATTAAAATTTCCTTCATGTAA___GTAATTTTATAAGGTCATCTGTAGCAAATTGGCAAATTT

Fln Alignment:

Contig1765___MAKGEP---VYSEFPPIDKCSSVGREKHIVAADLDGTLLRGRSSFPYFALTAFETGGIVRLLGLVLASPLAGLLYYLISETAGIQVLIFVTFVGVRIEDIESVASAVLPKFYSEDLHSQSWKIFSACGKRCVLTANxxxxxxxxLREYLGADMVIGTEINSFR-GRATGFVKRPGVLVGSEKAKALVRAFGYDNLPDIGLGDRKTDYPFIRLCKEGYMVHANPFAEAVDRKKLPKPLVFHDGRLVQRPTPLKTLIIILWIPVGFLLACLRIAAGALLPMSMTYYAFWCLGVKVTIKGTPPPDMREKDDINGRKGVLFVCSHRTLLDPIFLSTALGRPIAAVTYSVSRLSEFLSPIKTVRLSRDRVKDAKMIKELLEEGDMVLCPEGTTCREPFLLRFSALFAELTDQIVPVAMNNKMSLFHGTTARGWKGMDPFYFFMNPSPTYEVTFLNQLPLELTCTGGKSSHEVANYIQRVLAATLSYECTSLTRKDKYRVLAGNDGVV-VKKPRTLWASDH
A9NXM0______________MAKGQSGLDCQGLFDVISKCSSKGRENQTVAADLDGTMLRSRSSFPYFMLVAMEGGSLLRGMVLLACAPMAWFLYNFISEAAGIQLLIFISFAGLKIRDIELVSRAVLPKFYAEDVHPESWRVFSAFGKRYIVTANxxxxxxxxVKGYLGADKVLGTELQVSRSGRATGFVKKPGVLVGDLKKAAVEAEFG-DKLPELGLGDRETDHPFMSLCKEGYMVPKMKVDE-VPTNKLMSPIVFHDGRLVQRPNPGAALLTFLWLPIGFFLAQFRVFGNIPIPEKYVKISYKIMGIKLVVKGTPPPAPKKK----GERGVLFVCDHRTLLDPVIVAVALGRKVSAVTYSISRFSEIISPIKTVRLTRDRERDAANIKRLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAICNKMSMFHGTTVRGWKGFDPFFFFMNPVPTYEVTFLDQLPTELTCAGGKSPIEVANYIQRVLAATLGYECTNFTRKDKYRMLAGNDGIVSLNKTATARSNNH

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
546	20			80	0.995493
547	20		80		0.995493
549			20	80	0.995493
550	80			20	0.995493
624	20	80			0.995493
626			25	75	0.996473
730		83	16		0.994512
1229	20		80		0.995493
1231		80	20		0.995493
1232		80		20	0.995493
1295	16			83	0.994512
1298	16		83		0.994512
1672		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain