SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1763

Length: 2840 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene1763
CGTCGTGACCTTGGCTGTCACTCATGGGATCAGAGAAGTAGCTTTAGCAACATATAATGGTGAAGTTATCTTTTTCAGGGTTTCAGGGTATTTAATGTCGGATAAATTGGAGGTTCCCCGTTTACGAGTTCACAAAGATTGGTACGTTGGGTTAGGAAAAGATCATGCAGATCGTGCTCATCCTGATGTGCATGATGAAGTTCTAATTCAGGAGGCTATTGACAATAAAGCTGTATCCGATCATCAGGGTAATGCTAAAGAAACAAAGTCCAATGAGTCATTTTCGTCAAATGGAGTTCTTGAACATCAAGCTTCAAGCAATGCATCTAATTCAGAATTGTTATCTCATGCCTCTCAGAATGGTAGCCTCGAATCTGCTTCAGAACACAATGACCAAACGAAACCTACAGTCGAGCTTCCCGAACATACAACCACTGAACTGCATAATGAAAGTAAAACAAATGTCACTAAAGAAGACCATGTTGGTAGTGATGAGGAATCCATGCATGATATACTAAATATGGGAGTAACAACAAACGCTACTGATACAGTAAAGTCAATGGGTTCTCAGAGGCGGCTTCTTACAGAATCTGAAACAGAAATTTCCAAGGAAGGTGATACCGAAGGAGCTGCTACTGTAAAAAATAATCAGGATCTGGCGGAGGAGGCAGATTCTTCTTTTGATCTGTTTCGAGATGGAGAAGATGGCTTGACTGATGAATATGCATATGACTATGATGACTATGTTGATGAATCAGCTTGGGGAGATGAAGACTTTGCTGAGGCCCAACATCCAAAAACCAGAAGATTTTGTCAATATTGATTCTCATATCCTCTGCACTCCAGTGATAGCAGATATTGACAAGGATGGTGTAGATGAGATGATTGTTGCAGCATCTTACTTTTTTGATCATGAGTATTATGACAACCCTGCACATTTAGCAGAATTGGGTGATATAGATGTTACTAAATATGTTGCTGGTGCAATTGTGGTTTTTAATCTTGATACCAAACAAGTTAAGTGGAGCACTCAACTGGATCTTAGCACAGACTCTGGAACCTTCCGTGCCCATATCTACTCTTCTCCTTCAGTGGTGAACCGGGATGGTGATGGTTATTTGGACATTCTTGTGGGAACTTCATTTGGCTTCTTTTATGTTTTAGATCACCATGGAAAAACAAGGGGAGGCTTTCCACTACAAATGGGTGAGATTCAAGGACAAGTCATAGCTGCTGACATTAATGATGATGGGAAAATTGAAATGGTCACAACTGATACACGAGGCAATGTGGCTGCATGGACTACTCAAGGAAAAGAAATTTGGGAACAACATTTAAAGAGTCTTATTGCACAGGGCCCGAGCGTTGGTGATGTTGATGGAGATGGACATACAGACCTGGTAGTTCCAACAATTTCAGGCAACATTTATGTTCTGAATGGAAAGGATGGATCATATGTGAAGCCATTCCCTTATCGCACTCATGGGAGGATCATGAGTCCAGTCCTTCTGGTTGACCTGAGTAAGCGTGGAGAAAATCGTAAAGGGCTAACTCTTGCTACAACATCATTTGATGGTTACTTCTATCTTATTGACGGCCAAACAGCTTGTGCTGATGTTATTGATATTGGAGAGACTTCATATAGCATGGTTCTAGCTGATAATGTTGATGGAGGTGATGATCTTGATCTCATTGTGACAACCATGAATGGAAATGTATTCTGCTTTTCAACTCCTGCTCCACATCATCCAATGAAGACGTGGACATCACAAACACAGGGAAGAAGTAATGTTGCAAGTCGTCATAATCGTGAAGGAATTTTTGTTTTACCATCATCTAGGGTTATGCGAGATGAGGAAGGTGACAGTTTCTGGTTACAATTCAAAATTTTGGACCAACATCGAGTCCCTTCAGGATCACATGGGCCTTATAATGTTACGGTGTCACTTCTAGTTCCTGGAAATTACCAGGGTCCAAGAAGGATATTACAACATCAGATATATGATCGGCCTGATACCTACAAAATGAAGTTACCAACAGTACCTGTGCGAACAACAGGGACAGTTATTGTAGAGATGGTTGACAAGAATGGATTGTACTTCTCAGATGAATTCTCTCTCACCTTCCATATGCACTATTACAAGCTATTGAAGTGGCTTCTTGTTCTTCCAATGGTTGGAATGTTTGGCTTACTTGTGATTTTCCGTCCACAAGAAGGTGCACCTTTGCCATCATTCTCTAGAAACAACCACCAGCTTTAGAGTGGCGAAGGAAAGGCATGGCTCCTTGTGTACAATATTGCAGTTTATACTCATTTCAGATAACTAGTTCTGGCCGGGAAAAATTTGTGCAGCACAAGAGAATTGATAACAGTTTTCCTTCAACAATTCATGAACATGTAATTCTGTCGGAGATTACTTAGAGTGACTCCCTAGCCGCATCGCCTTATCATGAATATTCCAAAGGTCAGTCATAAAATTGAGGCAGAAATGGACATCATTATGGTTTCTAGAGCTGCCAAGTAAACATTTTAACAAGGGTGCTTTTACATAACGATTTCTTTACCTAACATTAACGGACAATTGTTAACTGAAAATAGAAAGCTCGAGTTAGAAAGAATGTCAATTTCAAAGAAATTTCAAGACTTGCTTCTTAAAGGAAAAAAAGGTAAGTGCTATAAAGAAGTAAAGAAACTAGCCACTAAAAGGAAGCATGAAACAAATGAGGACCACATCTAGCAAGCATAGCGCTGTTGTTGAAAAACTTCTCTGAATTCAATGCATGCCTTGGTGAGCTCAGAGTGTAATACTTTGACTTGGGCTCAACAAAAACTTGCCAAC

Ace file of the UniGene sp_v2.0_unigene1763

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	defective in exine formation [Arabidopsis thaliana]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	39%
Blast2go	defective in exine formation protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	pollen wall assembly	GO:0010208	Biological Process	85%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	85%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	FG-GAP	IPR013517	-	0.0	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SPE1

Fln msg: Overlapping hits, possible frame ERROR between 799 and 795, your sequence is shorter than subject: 754 - 868

Fln protein: VVTLAVTHGIREVALATYNGEVIFFRVSGYLMSDKLEVPRLRVHKDWYVGLGKDHADRAHPDVHDEVLIQEAIDNKAVSDHQGNAKETKSNESFSSNGVLEHQASSNASNSELLSHASQNGSLESASEHNDQTKPTVELPEHTTTELHNESKTNVTKEDHVGSDEESMHDILNMGVTTNATDTVKSMGSQRRLLTESETEISKEGDTEGAATVKNNQDLAEEADSSFDLFRDGEDGLTDEYAYDYDDYVDESAWGDEDFAEAQHxxxPEDFVNIDSHILCTPVIADIDKDGVDEMIVAASYFFDHEYYDNPAHLAELGDIDVTKYVAGAIVVFNLDTKQVKWSTQLDLSTDSGTFRAHIYSSPSVVNRDGDGYLDILVGTSFGFFYVLDHHGKTRGGFPLQMGEIQGQVIAADINDDGKIEMVTTDTRGNVAAWTTQGKEIWEQHLKSLIAQGPSVGDVDGDGHTDLVVPTISGNIYVLNGKDGSYVKPFPYRTHGRIMSPVLLVDLSKRGENRKGLTLATTSFDGYFYLIDGQTACADVIDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPMKTWTSQTQGRSNVASRHNREGIFVLPSSRVMRDEEGDSFWLQFKILDQHRVPSGSHGPYNVTVSLLVPGNYQGPRRILQHQIYDRPDTYKMKLPTVPVRTTGTVIVEMVDKNGLYFSDEFSLTFHMHYYKLLKWLLVLPMVGMFGLLVIFRPQEGAPLPSFSRNNHQL*

Protein Length: 755

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGGATCAGAGAAGTAGCTTTAGCAACATATAATGGTGAAGTTATCTTTTTCAGGGTTTCAGGGTATTTAATGTCGGATAAATTGGAGGTTCCCCGTTTACGAGTTCACAAAGATTGGTACGTTGGGTTAGGAAAAGATCATGCAGATCGTGCTCATCCTGATGTGCATGATGAAGTTCTAATTCAGGAGGCTATTGACAATAAAGCTGTATCCGATCATCAGGGTAATGCTAAAGAAACAAAGTCCAATGAGTCATTTTCGTCAAATGGAGTTCTTGAACATCAAGCTTCAAGCAATGCATCTAATTCAGAATTGTTATCTCATGCCTCTCAGAATGGTAGCCTCGAATCTGCTTCAGAACACAATGACCAAACGAAACCTACAGTCGAGCTTCCCGAACATACAACCACTGAACTGCATAATGAAAGTAAAACAAATGTCACTAAAGAAGACCATGTTGGTAGTGATGAGGAATCCATGCATGATATACTAAATATGGGAGTAACAACAAACGCTACTGATACAGTAAAGTCAATGGGTTCTCAGAGGCGGCTTCTTACAGAATCTGAAACAGAAATTTCCAAGGAAGGTGATACCGAAGGAGCTGCTACTGTAAAAAATAATCAGGATCTGGCGGAGGAGGCAGATTCTTCTTTTGATCTGTTTCGAGATGGAGAAGATGGCTTGACTGATGAATATGCATATGACTATGATGACTATGTTGATGAATCAGCTTGGGGAGATGAAGACTTTGCTGAGGCCCAACATxxxxxxxxxCCAGAAGATTTTGTCAATATTGATTCTCATATCCTCTGCACTCCAGTGATAGCAGATATTGACAAGGATGGTGTAGATGAGATGATTGTTGCAGCATCTTACTTTTTTGATCATGAGTATTATGACAACCCTGCACATTTAGCAGAATTGGGTGATATAGATGTTACTAAATATGTTGCTGGTGCAATTGTGGTTTTTAATCTTGATACCAAACAAGTTAAGTGGAGCACTCAACTGGATCTTAGCACAGACTCTGGAACCTTCCGTGCCCATATCTACTCTTCTCCTTCAGTGGTGAACCGGGATGGTGATGGTTATTTGGACATTCTTGTGGGAACTTCATTTGGCTTCTTTTATGTTTTAGATCACCATGGAAAAACAAGGGGAGGCTTTCCACTACAAATGGGTGAGATTCAAGGACAAGTCATAGCTGCTGACATTAATGATGATGGGAAAATTGAAATGGTCACAACTGATACACGAGGCAATGTGGCTGCATGGACTACTCAAGGAAAAGAAATTTGGGAACAACATTTAAAGAGTCTTATTGCACAGGGCCCGAGCGTTGGTGATGTTGATGGAGATGGACATACAGACCTGGTAGTTCCAACAATTTCAGGCAACATTTATGTTCTGAATGGAAAGGATGGATCATATGTGAAGCCATTCCCTTATCGCACTCATGGGAGGATCATGAGTCCAGTCCTTCTGGTTGACCTGAGTAAGCGTGGAGAAAATCGTAAAGGGCTAACTCTTGCTACAACATCATTTGATGGTTACTTCTATCTTATTGACGGCCAAACAGCTTGTGCTGATGTTATTGATATTGGAGAGACTTCATATAGCATGGTTCTAGCTGATAATGTTGATGGAGGTGATGATCTTGATCTCATTGTGACAACCATGAATGGAAATGTATTCTGCTTTTCAACTCCTGCTCCACATCATCCAATGAAGACGTGGACATCACAAACACAGGGAAGAAGTAATGTTGCAAGTCGTCATAATCGTGAAGGAATTTTTGTTTTACCATCATCTAGGGTTATGCGAGATGAGGAAGGTGACAGTTTCTGGTTACAATTCAAAATTTTGGACCAACATCGAGTCCCTTCAGGATCACATGGGCCTTATAATGTTACGGTGTCACTTCTAGTTCCTGGAAATTACCAGGGTCCAAGAAGGATATTACAACATCAGATATATGATCGGCCTGATACCTACAAAATGAAGTTACCAACAGTACCTGTGCGAACAACAGGGACAGTTATTGTAGAGATGGTTGACAAGAATGGATTGTACTTCTCAGATGAATTCTCTCTCACCTTCCATATGCACTATTACAAGCTATTGAAGTGGCTTCTTGTTCTTCCAATGGTTGGAATGTTTGGCTTACTTGTGATTTTCCGTCCACAAGAAGGTGCACCTTTGCCATCATTCTCTAGAAACAACCACCAGCTTTAGAGTGGCGAAGGAAAGGCATGGCTCCTTGTGTACAATATTGCAGTTTATACTCATTTCAGATAACTAGTTCTGGCCGGGAAAAATTTGTGCAGCACAAGAGAATTGATAACAGTTTTCCTTCAACAATTCATGAACATGTAATTCTGTCGGAGATTACTTAGAGTGACTCCCTAGCCGCATCGCCTTATCATGAATATTCCAAAGGTCAGTCATAAAATTGAGGCAGAAATGGACATCATTATGGTTTCTAGAGCTGCCAAGTAAACATTTTAACAAGGGTGCTTTTACATAACGATTTCTTTACCTAACATTAACGGACAATTGTTAACTGAAAATAGAAAGCTCGAGTTAGAAAGAATGTCAATTTCAAAGAAATTTCAAGACTTGCTTCTTAAAGGAAAAAAAGGTAAGTGCTATAAAGAAGTAAAGAAACTAGCCACTAAAAGGAAGCATGAAACAAATGAGGACCACATCTAGCAAGCATAGCGCTGTTGTTGAAAAACTTCTCTGAATTCAATGCATGCCTTGGTGAGCTCAGAGTGTAATACTTTGACTTGGGCTCAACAAAAACTTGCCAAC

Fln Alignment:

Contig1763___GIREVALATYNGEVIFFRVSGYLMSDKLEVPRLRVHKDWYVGLGKDHADRAHPDVHDEVLIQEAIDNKAVSDHQGNAKETKSNESFSSNGVLEHQXXXXXXXXXXXXXXXQNGSLESASE-----------HNDQTKPTVELPEHTTTELHNESKTNVT---KEDHVGSDEESMHDILNMGVTTNATDTVKSMGSQRRLLTESETEISKEGDTEGA---------ATVKNNQDLAEEADSSFDLFRDGEDGLTXXXXXXXXXXXXXSAWGDEDFAEAQHxxPEDFVNIDSHILCTPVIADIDKDGVDEMIVAASYFFDHEYYDNPAHLAELGDIDVTKYVAGAIVVFNLDTKQVKWSTQLDLSTDSGTFRAHIYSSPSVVNRDGDGYLDILVGTSFGFFYVLDHHGKTRGGFPLQMGEIQGQVIAADINDDGKIEMVTTDTRGNVAAWTTQGKEIWEQHLKSLIAQGPSVGDVDGDGHTDLVVPTISGNIYVLNGKDGSYVKPFPYRTHGRIMSPVLLVDLSKRGENRKGLTLATTSFDGYFYLIDGQTACADVIDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPMKTWTSQTQGRSNVASRHNREGIFVLPSSRVMRDEEGDSFWLQFKILDQHRVPSGSHGPYNVTVSLLVPGNYQGPRRILQHQIYDRPDTYKMKLPTVPVRTTGTVIVEMVDKNGLYFSDEFSLTFHMHYYKLLKWLLVLPMVGMFGLLVIFRPQEGAPLPSFSRN
B9SPE1______________GVREIALATYNGEVLFFRVSGYMMTEKLVVPRRRVRKDWHVGLNPDPVDRSQPDVHDDQLVFEAMEKK----------------SESLDNIIEYCYSVETTGSTHGSTPEKNSAISASTESTIPQSVTVPVNENQTDPIIKLP----INMDNSSKDTMSAGLNNPENGNNTES--------VGTNTTE--KGTKTGRRLLEDDKTKDSQEGSLESGENNSENVHEATVENDEGLEADADSSFELFRD-TDELADEYSYDYDDYVDDTMWGDEEWTEEKHxxLEDYVNIDSHILCTPVIADIDNDGVSEIIVAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGSIVVFNLDTKQVKWTKELDLSTDTSTFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGNIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTSQGKEIWERHLKSLVSQGPTVGDVDGDGRTDVVVPTISGNIYVLSGKDGSIVRPYPYRTHGRVMNQVLLVDLSKRGEKSKGLSLVTTSFDGYLYLIDGPTSCADVVDIGETSYSTVLADNVDGGDDLDLIVTTMNGNVFCFSTPVPHHPLKAWRSANQGRNNVANRYNREGVYITPSSRAFRDEEGKNFWLEIEIVDKYRYPSGSQAPYKVSTTLLVPGNYQGERRIKQNETFDRPGKYRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGVLVILRPQEAMPLPSFSRN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
2574	88			11	0.923564
2575		88	11		0.923564
2576	88		11		0.923564
2596		25		75	1.0
2617	75	25			0.996473
2619	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain