SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1761

Length: 2279 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1761
ATGGGACTTCTGAATAGCAAGAGTTAGAGGGTTTTGCTGTGATGGTGAGAATTAGGGTTTAAGCTGAAATGATTTTAGTAGTATACCATTGCTGCGAAGAGCAGTGACTGAGGCCATTGCATTTTCTACCATGTGGGCATTACGAAGAACAACAAATCTTCTGAGGGTGGATGGTAAATACCACCATGCCTTCAAAGCTTCTGCAGGCAGATTTCAGAATTGGAAAGACAGTGCAACACACTCGAGTTTTACATGCCAGTCTGTCAAAGATGATGTCGTTGGGTTAGGCGAAATAATTGGGCCGGCTACTGGAAGAGGCATATCGCATTTCCATTACCAGTACCCCAAATTTGCAAAAGTTGGTCGAGGGTTCACCTCTCAGGCTGAAACAGAGGACAAGGATTCGGCAATTGCTTCTGAGGATGAGTTTTCGGAGCTGGAGCATCCCGATAACTCTGCTGAAGCTCATGTCGATCCTTATTTATCAGAGGCAGAAGGTGAGAAAGAGGAAGTTCACAATGCCACACCGTTGTACCAGGCCATTTTGAGCTGTGGATACTTTGATTTGCCCTCTTCACTTGATCAGTGGCTTGCTGATGGCAATGTTTTAACGAGACGAGAAGTTGCCGTCACCTTTGTGCATCTTCGTAGACGTCGCATGTATAGACGTCTTCTCAAGGTGTCAGATTGGTTGGAGGTGAAAAAGCCATTTAAGATGAATGAAAGAGATTATGCATCTCGGCTGGATGTGATCACTAGGGTACTTGGCATCGTTAAAGCTGACAAGTATTTTGCAAGTATACCATTAGACATGAGGGGACAACGAGTGTATGGAACTCTCTTAACAAACTACTCATCTTCAGGTAATGCTCAGAAAGCTGAAGAGATTTTTAAGAAAATGAAGGCGGAAGGTTTTCCTCTAAATGCTTTTGAGTATAACCAGCTGCTGGTGCTTTACAAGCGTTTGGACAAGAGGAAAATTCAAGATGTATTAAAAATGATGGAAGATGAAGACGTAAAACCTAATATATTCACATACAAGATTCTCATAGATGCAAAAGGTTTTTCTGGCGACATTGGTGGAATGGAGCAGGTTGTTGAGAACATGAAATCTGAAGACATACAGATGGACAGTGATACTCTAGAATTGCTTGCTAGACATTATATCCGTGCGGGACTTGCTGTGAAGGCAGAGGTAGTCCTGAAGGAGCTGGAAAATGTTAGCCTCACAGACAAGCGCAGTCGTTTGAAAATGCTACTTCCTCTATATGCAGATCTAGGTAAACATAATGAAGTGGAAAGAATTTGGAAAGATTTTGAAGCTTTTCCTAATCTTCGTTCAGATGAATATGTTACTGGTGTTGCAGCTTGGGGGAAGTTGGGTCAACTTGAAAAAGCAGAAATGATATTTGAGAAATTGTTCAATTCTGGGAAGAAGTTATCGGCAAAGCACTATAGTGCCCTTCTCAATGTGTATGCCGACCAGCATTTATTGCTTAAAGGAAAGGAATTGGTAAAGCGAATGTCTGACAATGGGTGTGCAATCGAACCACATACCTGGGATGCACTCATTAGACTTCATGTCAATGCAGGTGAGCTGGAAAAGGCAGATTCCATTTTGCTTAAAGCTTGTAATCAGAGACAGTTAAGGCCAAAGTACTGGACGATGGCTACAATCTTAGAAAAGTATGCAGAAAGAGGAGATGTTGCCAATGCCGAGAAGATTTTTGATAGAATGAGACAAGTTGGCTACACTAGCAGTGGAGGGGCATTCGTTTCTCTTTTGAAATCTTATGTAAAGGCACGTGTGCCTGCCTATGGAATTAGGGAAAGAATGAAAGCAGATAAAATTGACCTCAATGGGAGATTGAATTATCTCCTGCAACAGGTGGATGCATTTAAGAATGATAATACTCTGGAAGGGATACTTGATTGATTCTCTGCTTGTGACTTCCATTACATGTTACAAGTAGTCCACATTATTTTGAGATAAAGATTCTTGCTTGTATTTCAGTGTTTTTCCTTGCATTCTGCAAGGAGAACATTTCAATAGTTAACTATTTTATTGTTTCAAGAATCAAAATATAGTCAGTCCAGCATACTGTCTCTCTTTTCTTTTATCAGGAACTTCTATTTTTGGTCAGGACAACTCTCAGTATTCATTAAAAGCTGATTGCAGTGTAAATGGAGATGATTTTCCAACTGATCCTTTTTCTATTTGGTTTGATGGGTAGCTTGTAACCAAACTGAGCTAATGTGCAATTGTTCATCAGATGATA

Ace file of the UniGene sp_v2.0_unigene1761 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-binding protein [Triticum aestivum]	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	pentatricopeptide repeat-containing protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	63%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLC6

Fln msg:

Fln protein: MWALRRTTNLLRVDGKYHHAFKASAGRFQNWKDSATHSSFTCQSVKDDVVGLGEIIGPATGRGISHFHYQYPKFAKVGRGFTSQAETEDKDSAIASEDEFSELEHPDNSAEAHVDPYLSEAEGEKEEVHNATPLYQAILSCGYFDLPSSLDQWLADGNVLTRREVAVTFVHLRRRRMYRRLLKVSDWLEVKKPFKMNERDYASRLDVITRVLGIVKADKYFASIPLDMRGQRVYGTLLTNYSSSGNAQKAEEIFKKMKAEGFPLNAFEYNQLLVLYKRLDKRKIQDVLKMMEDEDVKPNIFTYKILIDAKGFSGDIGGMEQVVENMKSEDIQMDSDTLELLARHYIRAGLAVKAEVVLKELENVSLTDKRSRLKMLLPLYADLGKHNEVERIWKDFEAFPNLRSDEYVTGVAAWGKLGQLEKAEMIFEKLFNSGKKLSAKHYSALLNVYADQHLLLKGKELVKRMSDNGCAIEPHTWDALIRLHVNAGELEKADSILLKACNQRQLRPKYWTMATILEKYAERGDVANAEKIFDRMRQVGYTSSGGAFVSLLKSYVKARVPAYGIRERMKADKIDLNGRLNYLLQQVDAFKNDNTLEGILD*

Protein Length: 603

Fln nts: ATGGGACTTCTGAATAGCAAGAGTTAGAGGGTTTTGCTGTGATGGTGAGAATTAGGGTTTAAGCTGAAATGATTTTAGTAGTATACCATTGCTGCGAAGAGCAGTGACTGAGGCCATTGCATTTTCTACC_-_ATGTGGGCATTACGAAGAACAACAAATCTTCTGAGGGTGGATGGTAAATACCACCATGCCTTCAAAGCTTCTGCAGGCAGATTTCAGAATTGGAAAGACAGTGCAACACACTCGAGTTTTACATGCCAGTCTGTCAAAGATGATGTCGTTGGGTTAGGCGAAATAATTGGGCCGGCTACTGGAAGAGGCATATCGCATTTCCATTACCAGTACCCCAAATTTGCAAAAGTTGGTCGAGGGTTCACCTCTCAGGCTGAAACAGAGGACAAGGATTCGGCAATTGCTTCTGAGGATGAGTTTTCGGAGCTGGAGCATCCCGATAACTCTGCTGAAGCTCATGTCGATCCTTATTTATCAGAGGCAGAAGGTGAGAAAGAGGAAGTTCACAATGCCACACCGTTGTACCAGGCCATTTTGAGCTGTGGATACTTTGATTTGCCCTCTTCACTTGATCAGTGGCTTGCTGATGGCAATGTTTTAACGAGACGAGAAGTTGCCGTCACCTTTGTGCATCTTCGTAGACGTCGCATGTATAGACGTCTTCTCAAGGTGTCAGATTGGTTGGAGGTGAAAAAGCCATTTAAGATGAATGAAAGAGATTATGCATCTCGGCTGGATGTGATCACTAGGGTACTTGGCATCGTTAAAGCTGACAAGTATTTTGCAAGTATACCATTAGACATGAGGGGACAACGAGTGTATGGAACTCTCTTAACAAACTACTCATCTTCAGGTAATGCTCAGAAAGCTGAAGAGATTTTTAAGAAAATGAAGGCGGAAGGTTTTCCTCTAAATGCTTTTGAGTATAACCAGCTGCTGGTGCTTTACAAGCGTTTGGACAAGAGGAAAATTCAAGATGTATTAAAAATGATGGAAGATGAAGACGTAAAACCTAATATATTCACATACAAGATTCTCATAGATGCAAAAGGTTTTTCTGGCGACATTGGTGGAATGGAGCAGGTTGTTGAGAACATGAAATCTGAAGACATACAGATGGACAGTGATACTCTAGAATTGCTTGCTAGACATTATATCCGTGCGGGACTTGCTGTGAAGGCAGAGGTAGTCCTGAAGGAGCTGGAAAATGTTAGCCTCACAGACAAGCGCAGTCGTTTGAAAATGCTACTTCCTCTATATGCAGATCTAGGTAAACATAATGAAGTGGAAAGAATTTGGAAAGATTTTGAAGCTTTTCCTAATCTTCGTTCAGATGAATATGTTACTGGTGTTGCAGCTTGGGGGAAGTTGGGTCAACTTGAAAAAGCAGAAATGATATTTGAGAAATTGTTCAATTCTGGGAAGAAGTTATCGGCAAAGCACTATAGTGCCCTTCTCAATGTGTATGCCGACCAGCATTTATTGCTTAAAGGAAAGGAATTGGTAAAGCGAATGTCTGACAATGGGTGTGCAATCGAACCACATACCTGGGATGCACTCATTAGACTTCATGTCAATGCAGGTGAGCTGGAAAAGGCAGATTCCATTTTGCTTAAAGCTTGTAATCAGAGACAGTTAAGGCCAAAGTACTGGACGATGGCTACAATCTTAGAAAAGTATGCAGAAAGAGGAGATGTTGCCAATGCCGAGAAGATTTTTGATAGAATGAGACAAGTTGGCTACACTAGCAGTGGAGGGGCATTCGTTTCTCTTTTGAAATCTTATGTAAAGGCACGTGTGCCTGCCTATGGAATTAGGGAAAGAATGAAAGCAGATAAAATTGACCTCAATGGGAGATTGAATTATCTCCTGCAACAGGTGGATGCATTTAAGAATGATAATACTCTGGAAGGGATACTTGATTGA___TTCTCTGCTTGTGACTTCCATTACATGTTACAAGTAGTCCACATTATTTTGAGATAAAGATTCTTGCTTGTATTTCAGTGTTTTTCCTTGCATTCTGCAAGGAGAACATTTCAATAGTTAACTATTTTATTGTTTCAAGAATCAAAATATAGTCAGTCCAGCATACTGTCTCTCTTTTCTTTTATCAGGAACTTCTATTTTTGGTCAGGACAACTCTCAGTATTCATTAAAAGCTGATTGCAGTGTAAATGGAGATGATTTTCCAACTGATCCTTTTTCTATTTGGTTTGATGGGTAGCTTGTAACCAAACTGAGCTAATGTGCAATTGTTCATCAGATGATA

Fln Alignment:

Contig1761___MWALRRTTNLLRVDGKYHHAFKASAGRFQNWKDSATHSSFTCQSVKDDVVGLGEIIGPATGRGISHFHYQYPKFAKVGRGFTSQAETEDKDSAIASEDEFSELEHPDNSAEAHVDPYLSEAEGEKEEVHNATPLYQAILSCGYFDLPSSLDQWLADGNVLTRREVAVTFVHXXXXXXXXXXLKVSDWLEVKKPFKMNERDYASRLDVITRVLGIVKADKYFASIPLDMRGQRVYGTLLTNYSSSGNAQKAEEIFKKMKAEGFPLNAFEYNQLLVLYKRLDKRKIQDVLKMMEDEDVKPNIFTYKILIDAKGFSGDIGGMEQVVENMKSEDIQMDSDTLELLARHYIRAGLAVKAEVVLKELENVSLTDKRSRLKMLLPLYADLGKHNEVERIWKDFEAFPNLRSDEYVTGVAAWGKLGQLEKAEMIFEKLFNSGKKLSAKHYSALLNVYADQHLLLKGKELVKRMSDNGCAIEPHTWDALIRLHVNAGELEKADSILLKACNQRQLRPKYWTMATILEKYAERGDVANAEKIFDRMRQVGYTSSGGAFVSLLKSYVKARVPAYGIRERMKADKIDLNGRLNYLLQQVDAFKNDNTLEGILD
B8LLC6______________MWALRKTANHLRAHGKYHHTLKTSAGRLENWKDNATHLSFICKSIKGDVVGLGETNGSTPARGISHWHCQYPKFAQVGRGFASQVVTEDNDSADASEDEFSELDDPANSAEAHADPYLSDAEVEKEEVHNASPLYQTVLSCKFIDLPSSLEQWLADGNVLTRREVVITFVHLRNRRMFKRLLKVSDWLEGKKPFKKTERDYASRLDVITKILGIFKGEKYFASIPSDMRGQRAYGTLLANYSSTCNVEKAEEIFKKMKAEGFSLTAFEYNQLLLLYKRLDKKKIQDVLKMMEDEGVKPTIFTYKILIDVKGWMGDIGGMEQVAENMKSEDIEMDSGTLELLARHYIRAGLAEKAEVVLKELENVSLKDKRSRLKMLLPLYAELGKPTEVERIWKDFEAFPALRLDEYATGVVAWGKLGQIEKAEITFEKLLNSGKKLSAKHYNALLNVYADHHLLLKGKELVKRMSDNGCTIEPPIWDALIRLHVNAGELEKADSILFKACNQKQLRPKYWTMVTILEKYAERGDVANAEKIFDRMRQAGYTGSAGAFASLLKSYANARVPAYGFRERMKADKIYLNGRLNSLMEQVDAFKSD-TLEGILD

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1959	80		20		0.995493
2010		12		87	0.992554
2152			16	83	0.994512
2153			80	20	0.995493
2206		20		80	0.995493
2207	80	20			0.995493
2208	75	25			0.996473
2209	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain