SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1755

Length: 1783 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1755

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AAL59910.1\| unknown protein [Arabidopsis thaliana] gb\|AAM67492.1\| unknown protein [Arabidopsis thaliana] dbj\|BAF01109.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE79616.1\| protein kinase fami	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	protein	-	-	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	0.0	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ73

Fln msg: your sequence is shorter than subject: 440 - 536

Fln protein: QIAGAGDLRRLLEFRVIGVRISSSWKDESMCKKLKPHMVHEPVKSHRSSNRRLPRSSDEINKTPSRSTDISGTSSLFSKVSTTSSANSLASLRDSLPENPNIYRYKELADATAQFTSGRLGKSSVWKCVLRGKTVVASVRSQQRKIRDFSAGLREICNAHHASIVKLLGGCCEGDHLYLVYEYVHGSSLEDCLRGSKVPGFTVLSTWISRMQIAVDVAQGLEYMHHDSKLDYIHNYIKSSSILITEPGYRARICHLGACYLAGEYDSGVVPERDSNSEIQPVGLHKRSRSTKITGTHGYMAPEYVAGAGLSHKTDVFALGVVLLELLSGHEPVRYVTEGGRQKRIGLIESLNSILSEGGNKCTGMLRSWMDPRLRDSFPVDCAERVARIASACVDSDSAKRPEMRYVAGELSKVFIKSQQWSEKMEANKGYTSVTFEAR*

Protein Length: 441

Fln nts: CAGATTGCGGGAGCAGGCGATCTCAGAAGGCTTCTCGAATTCAGAGTTATAGGAGTTCGGATCTCTTCATCCTGGAAAGATGAAAGTATGTGCAAAAAGCTCAAACCCCACATGGTGCACGAGCCCGTCAAGTCCCATAGATCATCAAACAGAAGATTACCTCGGTCCTCGGATGAGATAAATAAAACCCCCAGCAGGAGCACAGACATAAGCGGCACCTCCAGCCTCTTCTCCAAGGTCTCCACTACTAGCAGTGCCAATTCGCTCGCCAGTCTCAGGGATTCCCTCCCGGAAAACCCCAATATTTACAGATACAAGGAACTCGCAGACGCCACCGCCCAATTCACCTCCGGTAGGCTGGGCAAATCGTCGGTCTGGAAGTGTGTTCTCAGGGGAAAAACAGTGGTCGCTAGTGTGAGAAGTCAGCAGAGAAAAATTAGGGATTTCAGTGCAGGACTCAGAGAAATCTGCAACGCCCACCACGCCAGCATAGTGAAGCTCTTGGGAGGCTGCTGCGAGGGGGATCACTTATATCTGGTCTACGAGTACGTCCATGGATCGAGTCTCGAGGACTGCTTGAGGGGTAGCAAGGTGCCCGGATTCACCGTCCTAAGCACCTGGATTTCGCGAATGCAGATCGCCGTAGACGTGGCGCAGGGACTGGAATACATGCACCACGACAGCAAATTGGATTACATCCACAATTACATAAAGTCCAGCAGCATTCTTATAACGGAGCCCGGCTACAGAGCCCGGATCTGCCATTTGGGGGCTTGTTATCTTGCCGGAGAATACGACTCCGGCGTCGTTCCTGAACGGGATTCGAACTCGGAGATCCAGCCGGTAGGCTTGCATAAACGATCCAGGAGCACGAAGATCACTGGCACGCACGGCTACATGGCGCCGGAATATGTCGCTGGGGCCGGCCTCTCGCATAAGACGGACGTTTTTGCCTTGGGCGTGGTGTTGCTGGAGCTGCTTTCAGGCCACGAGCCGGTGAGATATGTGACGGAGGGCGGGCGCCAGAAGAGAATAGGGCTTATAGAAAGTTTGAATAGTATTCTTTCAGAAGGGGGCAATAAATGTACGGGGATGCTCAGGTCCTGGATGGATCCCCGCCTCAGGGATTCCTTTCCCGTGGATTGTGCAGAGCGAGTGGCGAGGATTGCTTCAGCCTGCGTCGATTCAGATTCCGCTAAGAGGCCAGAGATGAGGTATGTTGCAGGGGAGCTGTCGAAAGTTTTTATCAAGTCCCAGCAGTGGTCCGAGAAAATGGAAGCCAATAAGGGGTATACCAGTGTCACATTCGAGGCCAGATAA___AACCCTCATCCGAGATCTTTCTGTAATTGTTTTCCCCGTCATTTTTTCTCCTTCTGATACTTTGATTGGCATGGGTTGGGTTATTGGATTTTTCTGTTGGGGACTGAACCTGGTGTACAGTCAAAGAAAAGTGGGATTTATTTGCCCGAGAGAAAAAATTGTTCGAGTAAGAACATTTTCGTTTCGATTGTAACTTTATGCGTTACACAGAAGTGAAATCAATTTTGTATTGTCAGAACCACCCCGCTAAAATTGGGGATGGAATTATGAAACGATAGCAGTATATCAGTTCGTGAAGAATTCATATCTATGTGCAGAGATGTATGAATTTTACTAAAACGGAACTGATTTTTCCTCCATTCTTGAACAACTGTGTTGATTTTTTCTCCATTCTTGAACAACTGTGTGGAAATGTATTGTAGTATCAATTTGTGATTGACACGTCTCTGGAAGCGTAATCTGC

Fln Alignment:

Contig1755___ENPNIYRYKELADATAQFTSGRLGKSSVWKCVLRGKTVVASVRSQQRKIRDFSAGLREICNAHHASIVKLLGGCCEGD-HLYLVYEYVHGSSLEDCLRG-------SKVPGFTVLSTWISRMQIAVDVAQGLEYMHHDSKLDYIHNYIKSSSILITEPGYRARICHLGACYLAGEYDSGVVPERDSNSEIQPVGLHKRSRSTKITGTHGYMAPEYVAGAGLSHKTDVFALGVVLLELLSGHEPVRYVTEGG--RQKRIGLIESLNSILSEGGNKCTGMLRSWMDPRLRDSFPVDCAERVARIASACVDSDSAKRPEMRYVAGELSKVF
B8LQ73______________ENPFMYSIEDLDKATQNFSPLCNIEGSVYKGTLDGRDYAIKLMKG-----DISQELKILQKVNHTNLVKLEGVCISSEGQSYLVYEYIENSSLNTWLHDPESVENMSPIGWSSSSLPWKTRLQVALDVANGLQYIHEHTTPSVVHKDIKSSNILL-DGNFRAKIANFGM----------------AKSGINALTKH-------IMGTQGYMAPEYLADGFVSPKLDVFAFGVVLLEMISGKEAI--VRERGVPLAGKAGLLWTQIRPLLE-GEDIEGKLRKWVDRNLQNAYTMDSILGVATIARACVEEDPVARPTLPEIVYKLSNLF

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1039		20	80		0.995493
1040	20		80		0.995493
1261	11	88			0.923564
1298		44		55	1.0
1472	90	10			0.90298
1482	20			80	0.999996
1597	15		84		0.999986
1628	11			88	0.923564
1632		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain