SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1754

Length: 1186 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1754

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WS0273.BR_F03 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS0273_F03 3, mRNA sequence.	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	protein	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	69%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rhodanese-like	IPR001763	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX62

Fln msg: your sequence is shorter than subject: 308 - 421

Fln protein: YLRRVSFWQYNYGGYSGDLTAKMASELLRKEENTVLIDIRPQVLKESDGIPDLRRGARFKFAGLELPEVDGSIKKLLKNANAIDDVLTAAVIKNLKIVNGGTKVIIMDADGLQSKKVARALRKLGIKRSYRIQGGFKSWVGEGLRVKEMKTETPLTILKEETEAILEESRPAPGTIFAACVGFVAAINALIEWEKTLQLIGFIGVVQVIYSRINSYESAEDLKADLRALFSPFQSATQGILWIAGQMEPNKLKLATSPSTTAVQNRVLQAAAKHGSLPSEIEQTQDLEPVSDTDTETEMPNASQQEL*

Protein Length: 309

Fln nts: TATCTTCGTAGGGTTTCTTTTTGGCAGTACAACTATGGAGGATATTCTGGTGATCTAACTGCTAAAATGGCATCAGAACTCCTTAGAAAGGAGGAAAATACTGTGTTAATTGATATCCGGCCTCAGGTTCTGAAAGAAAGTGATGGAATACCGGATCTACGAAGAGGAGCAAGATTCAAATTTGCAGGGTTGGAATTACCAGAGGTAGATGGCTCTATAAAGAAGTTACTGAAGAATGCAAATGCAATTGATGATGTCTTGACTGCAGCCGTCATCAAAAACTTGAAAATTGTCAATGGTGGTACAAAGGTGATCATTATGGATGCAGATGGTCTTCAATCCAAAAAGGTTGCTAGAGCTTTGAGGAAGCTTGGAATCAAGAGATCATATCGAATTCAAGGAGGTTTCAAGTCTTGGGTGGGAGAAGGTCTCCGTGTTAAAGAGATGAAAACTGAGACACCGTTGACAATCCTGAAAGAGGAAACAGAGGCTATTCTTGAGGAGAGCAGACCAGCACCAGGAACCATTTTTGCAGCATGTGTAGGTTTTGTTGCAGCCATCAATGCGCTGATTGAGTGGGAAAAGACACTACAACTTATTGGCTTTATTGGTGTTGTACAGGTGATCTATAGTCGAATTAATTCGTATGAAAGTGCCGAGGATCTGAAGGCTGATCTGAGGGCATTGTTTAGTCCATTTCAATCAGCTACCCAGGGCATTCTCTGGATTGCTGGACAGATGGAACCGAATAAATTGAAGTTGGCAACGTCACCGTCAACAACAGCAGTGCAAAACAGGGTTCTTCAAGCAGCTGCAAAACATGGCTCTCTGCCCTCTGAGATTGAACAGACACAAGATTTAGAGCCTGTCAGCGACACTGATACTGAAACTGAGATGCCGAATGCCTCTCAGCAGGAACTGTAA___TTAAGACCATTGAGTTTCAGTAATCTGATATAACACTTTGACGAAGCATCATAAAATCCCAGAGTGTAAGCCTCTTCCGCTGTATTTTCCTGTGGCCACTGAATTCATATTATATAACCTTTGCTTTGTCGTATCCAATGTCCGCAAACCTCGTATGAAATTGTGACATACGTTTTTCACATATTGTCATAAAGTGTATATTGAGCTGGACAGCTGAATTGCTTAAAAATTGTTGTAATATTATATATCATCTGTCTTTTCT

Fln Alignment:

Contig1754___YNYGGYSGDLTAKMASELLRKEENTVLIDIRPQVLKESDGIPDLRRGARFKFAGLELPEVDGSIKKLLKNANAIDDVLTAAVIKNLKIVNGGTKVIIMDADGLQSKKVARALRKLGIKRSYRIQGGF---KSWV
A9NX62______________FSVRGYKGDLSPAEALQLLTKQDY-VMIDVRTEKEKSKAGIPSVPRSAKNKLLSLAVEEFPNKLRSLLRNSKKVEAEVAALKISYLKRLNKSSRVVIMDSYGDVAKTVARALTDLGFNSTWILTDGFSGGKGWL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
255	90			10	0.90298
258			10	90	0.90298
262		10	90		0.90298
280	90	10			0.90298
486		87		12	0.992554
488			87	12	0.992554
489	87			12	0.992554
492		87	12		0.992554
558		75	25		1.0
568	12		87		0.992554
610		14		85	0.993533
612		14	85		0.993533
711	11	77		11	0.968132
713	22	77			0.999999
714	88	11			0.923564
715			77	22	0.999999
716		11	77	11	0.968132
717	11		77	11	0.968132
721			10	90	0.90298
1150	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain