SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1747

Length: 1706 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1747

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI	-	-	85%
FL-Next	tr=Ribosomal protein S3; Picea smithiana. Mitochondrion.	-	-	85%
Blast2go	ribosomal protein s3	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	83%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	83%
Blast2go	rRNA binding	GO:0019843	Molecular Function	83%
Blast2go	small ribosomal subunit	GO:0015935	Cellular Component	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L16	IPR000114	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	IPR000440	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3		IPR008282	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	Ribosomal protein S3, conserved site	IPR018280	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D2DWK4

Fln msg: Overlapping hits, possible frame ERROR between 437 and 434, your sequence is shorter than subject: 551 - 569

Fln protein: RYGYHDRSPSRRSNISKLLRVSGWMAHKHPMSGKYAAKKRFVNDIAFPIGNDDPSGKTKFFKFLLPNKFRGTKDSTSNRLIQTIPAVRPSSNYLVMQYFFHMENQIHFDPIDVVVLNHFVAPAEPGGADRQGGSLDKRIRSRIxxxVESFTAKTEQGEFLAEAKKRFTHFIFICRARFARTTKTCWSILLFPFFGATFFFLRENLRVPNNKIGDALSLREQLLGKLRIKLRNLLGKEKVIRLVEKFISLGGIGGLMRGIGMMIEIILKNRRIPYGYNYYLNEVRKMRSLLSNRTNTNTLNWVGQNLKLSKCFSNCSGHIFPTEGQNKIISFHF*SNSSGYSIIGAQRGEGDPYLLFRSIERCRNS*NRMQGVWKNIL*CISP*N*LRFCESIYSLWNLRCQSVDLIHIVTKRRDVLYPKRTKYRKYRKGICRRGCETGGTQLGFGRYGIRSCGAGRISYRAIGAARRAISGQFRRNGQIWVRVFADLPITGKPTEVRMGKGKGNPTGWIARVSTGQIPFEMDGVSLLDARQAATLAAHKLCLSTKFVQWS*

Protein Length: 552

Fln nts: AACGCTATGGATACCATGACCGATCACCATCGAGACGGAGTAATATTTCGAAATTACTCCGGGTCAGCGGTTGGATGGCCCACAAGCATCCAATGAGTGGGAAATACGCCGCGAAGAAAAGGTTTGTAAATGACATAGCGTTCCCGATAGGAAATGACGACCCCTCTGGAAAAACCAAGTTCTTTAAGTTCCTTCTCCCGAATAAGTTCCGCGGGACGAAAGATAGCACGAGTAATAGACTTATACAGACCATCCCTGCTGTGCGTCCCTCCTCTAATTACTTGGTCATGCAATACTTCTTTCATATGGAGAACCAAATTCATTTTGACCCCATAGACGTCGTAGTTCTCAATCATTTCGTGGCACCGGCTGAACCGGGGGGAGCGGATAGACAGGGAGGAAGCTTAGATAAGAGAATACGCTCCCGCATTxxxxxxxxxGTAGAAAGCTTTACCGCCAAGACCGAGCAGGGCGAGTTCTTGGCCGAAGCCAAGAAAAGGTTTACCCACTTTATTTTCATTTGCCGAGCGCGCTTTGCGAGAACAACAAAAACCTGTTGGTCCATACTGCTCTTTCCTTTCTTTGGTGCTACCTTTTTCTTCCTAAGGGAGAACCTTAGGGTGCCCAATAACAAAATTGGTGATGCCCTATCACTAAGGGAACAACTCCTAGGTAAATTAAGGATAAAATTAAGGAACCTCCTGGGTAAGGAGAAGGTAATCAGATTGGTAGAAAAATTCATATCCCTAGGTGGGATAGGAGGATTGATGAGGGGAATAGGGATGATGATAGAGATAATACTGAAAAACAGAAGAATTCCATACGGGTACAACTATTATTTGAACGAAGTGCGAAAAATGCGATCTTTGTTGTCCAATAGAACAAACACTAATACCTTAAATTGGGTCGGTCAAAATCTTAAACTATCAAAGTGCTTCTCTAATTGCTCAGGACATATCTTTCCAACTGAGGGACAGAACAAGATCATTTCGTTCCATTTTTAGTCAAATAGTTCGGGATATTCCATTATTGGTGCCCAAAGGGGTGAGGGGGATCCGTATTTGTTGTTCAGGTCGATTGAAAGGTGCAGAAATAGCTAGAACCGAATGCAGGGAGTATGGAAAAACATCTTGTAATGCATTTCGCCATAAAATTGATTACGCTTCTGCGAAAGTATCTACTCGTTATGGAATCTTAGGTGTCAAAGTGTGGATCTCATTCATATAGTAACAAAAAGAAGGGACGTGCTATATCCGAAACGTACGAAATATCGTAAATATCGGAAAGGCATATGTCGTAGGGGTTGCGAAACGGGCGGTACACAACTTGGTTTTGGAAGATATGGCATTAGAAGTTGTGGAGCTGGTCGTATCTCATATCGAGCCATTGGAGCAGCGCGTCGTGCTATAAGCGGACAATTTCGAAGAAATGGTCAAATATGGGTAAGAGTATTCGCGGATCTCCCTATTACCGGTAAACCTACAGAAGTGAGAATGGGAAAAGGAAAAGGGAATCCTACGGGTTGGATTGCTCGTGTGTCTACGGGACAAATCCCATTTGAAATGGATGGTGTTAGTTTGTTAGATGCTCGACAAGCTGCTACATTGGCGGCGCATAAACTATGTTTGTCAACCAAGTTTGTTCAGTGGTCGTAA___TAGTGGGGAAAAATCAGGACAGACCTTTCTTAGGCGAAAGTGTTTGGAGCGA

Fln Alignment:

Contig1747___RYGYHDRSPSRRSNISKLLRVSGWMAHKHPMSGKYAAKKRFVNDIAFPIGNDDPSGKTKFFKFLLPNKFRGTKDSTSNRLIQTIPAVRPSSNYLVMQYFFHMENQIHF-----------DPIDVVVLNHFVAPAEPGGADRQGGSLDKRIRSRIGxFVESFTAKTEQGEFLAEAKKRFTHFIFICRARFARTTKTCWSIXXXXXXXXXXXXXRENLRVPNNKIGDALSLREQLLGKLRIKLRNLLGKEKVIRLVEKFXXXXXXXXXXXXXXXXXXXXXKNRRIPYGYNYYLNEVRKM
D2DWK4______________RYGYHDRSPSRRSNISKLLRVSGWMAYKHPMSGKYAANKRFVNDIAFLIGNDDSFGKTKFFKFFFPKKFRGTKDSTSNRLIQALPAVRPSFNYLVMQYFFHMENQIHFDPIHMENQIHSDPIDVVVLNHFVAPAEPGGADRQGGSLDKRIRSRIGxFVESFTAKTEQGEFLAEANKRFTHFIFICRARFARTTKTCWSILLFPFFGATFFFLRENLRVSNNKIGDALPLREKLLGKLRIKLRNLLGKEKVIRLVEKLISLGGIGGLMRGIGMIIEIILKNRRIPYGYNYYLNEVRKM

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
947	33	66			0.997452
950		66	33		0.997452
951	66		33		0.997452
1026		66		33	0.997452
1031			66	33	0.997452
1034	66		33		0.997452
1056	10			90	0.90298
1057		90		10	0.90298
1058		90	10		0.90298
1059			90	10	0.90298
1256		80		20	0.995493
1274	20		80		0.995493
1276	80			20	0.995493
1284	25		75		0.996473
1285			75	25	0.996473
1286	75			25	0.996473
1350		40		60	1.0
1351		40		60	1.0
1366		40		60	1.0
1410		50		50	1.0
1490	80		20		0.995493
1491	80		20		0.995493
1545		40		60	1.0
1555	80			20	0.995493
1558		80	20		0.995493
1559		60		40	1.0
1584		50		50	1.0
1585	50		50		1.0
1587		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain