SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1725

Length: 2245 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene1725
CTAGTTTTTTACAAAACCTGGATTACACGTACTGCCACTCATTTTATGTAGATAAAGTAATCTGGAATGTGCTCAATGCCTTTTTCTGGTTTTTGCAAACCCTGGGCTACACTCACTGCCACTTAGTTTTAAACCACTTAGTTTTTTTTTAATTATGTTCCCTTTATTCGTGTGTAGATGTATATATAAAGCAATGTGGGTTGTGATCAATGCCAACCAAACTAAAATTCCAGTGAAGGCTATAGAACTGTAGCCAAGCTTGTTCTGTTTTTCTTGCAGAAGGTATATTGCTATGGATACCCACTATCCAAACGCTCTGCTGGTGTGTTTCAATATAGTTCTGGTGTTCTTGGGAGAGCTGAGATCAGCTTCTGCCGACGACAACAGTACTGGACCCCTGTACAATTCTTTCGCTACAACAGAGTGCCAGAAACAGCCACCGCCATCTTCATACGGCGGAGGGATTGTTGCGAACCCGGAATTCAACAGTGGACTGGATGGCTGGAGCCCTTTTGGAGGCAGTATGCTGGAAATTCGATCGGACGAGGATGGGAACGAGTATTTGGTGGCCCGTGGAAGACAAAACAGCTATGATTCGCCCTCGCAGCATCTCAATGTAACACAAGGACTGATGTATTCGCTTTCAGCGTGGCTGCAGATCGGTGGAGAAAATACTTCGAGTGCAGTTGTTAAAGCCACCGTAGCTACAAGGAGTGGAGGTGTCACGAGGTATAACTGCGCCGGGACTGTAGTTGCACGCACTGGTTGCTGGTCTCTGCTCAAAGGAGGCCTTAATCTAGATATCTCTCCAGAATCGGCCACATTATACTTTGAGAGCCCAGATACGAGAGTAGAAATCTGGCTGGATAGCGTATCATTTCAGCCATTCAGTGTAGACCAGTGGCAATGGCAACAGGAAACCAGTATTGAAAAGAATCGCAAGGGAATTTTTATCATTCACCCTATCAACAGTACGGGGCAGAGCCTGAAAGAAGCCAAGCTATTCATCAATCAAACCAGGAGAGACTTCCCCATAGGATCCGCCATAGCCAAGACCATATTGGGCAATGATGCTTATCAGAAATGGTTCGTGGAACGTTTCAACGTAGCAACGTTCGAGAACGAGCTGAAGTGGTACAGCACAGAGTCCCAGCAAGGAAGAGAGAATTATACAGACGCTGATAATATGGTGAGCTTCTGCAAAACAAACAACATATCCATCCGTGGTCATAACATATTCTGGGAAGATCCGATGTATACTCCACAATGGGTAAAAAGCCTCGGTGCCCAGCAACTCCAAGAGGCGGTGGACACTCGGATTCGTTCACTGGTGGGAAGATACCAGGGTCAATTTCTCAGCTGGGATGTAAGCAACGAGATGCTTCATTTTTCATTCTTTGAAGACATGTTAGGACCCAATGCCTCCACTAATTTCTTCCAACTCGCCCAGCAATTGGATCCATCCACCCCCATGTTCATGAACGACTACAATACAATCGAGGCCTGCAACGACTTGAACGCCATACCTGATGCATATCTGAAGAAACTCAGTGACATAAACCAGCCATTGCTCATGGAAGGAATAGGGTTGGAATCCCATTTTTCAAAGCCCAATATACCATTCATGCGCTCCGTATTGGACAAATTGGGCTCTAAGGGTTTACCAATCTGGCTTACAGAAGTCGACATTACAAATACAGGAAACCAAACCAAACAGGGAGAGTACTTGGAACTGGTATTGCGCGAAGCATTTTCTCACCCAGCTGTGAATGGTATCGTTATGTGGTCGGCATTGCATCCCTACGGATGTTACAGGATGTGTCTCACAGACAATAATTTCACCAACCTTCCCACAGGAGATGTGGTGGACAAATTGATGGCAGAATGGAGTACCATGGATATCAGTGGGTTCACTGATGAGAGCGGGACCTTCAATTTCTCAGGATATTTTGGGGAGTATACGGTCACTGTAACGCATCCCAGCATTCCTAGTACTACCACTTCTTTCAAGGTCTCCAAGGATGTAGCTGCTGCAGACCAACCACAACACATTGATCTTCTTGTCTAACTATTTTAGTGAATCTCAAGTTCAGATCAATCTTTTCCTAATTTCTCCTGAGCTAAAATCTGACTATCTTGTTCGCTATGGTTTCTGGTTTGTTTTGTTTTTTTAAACTCACATGTTTCTTCCCAACCCATTTACTTAGCAGCCTGATAAAATTTGAACACAAACAACATTATTAAC

Ace file of the UniGene sp_v2.0_unigene1725

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Endo-1,4-beta-xylanase C, putative n=1 Tax=Ricinus communis RepID=B9T2E9_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	51%
Blast2go	glycosyl hydrolase family 10 protein	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	63%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	63%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	63%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	63%
Blast2go	Glycosaminoglycan degradation	00531	63%
Blast2go	Metabolic pathways	01100	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	63%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Carbohydrate-binding, CenC-like	IPR003305	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D8SC47

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MDTHYPNALLVCFNIVLVFLGELRSASADDNSTGPLYNSFATTECQKQPPPSSYGGGIVANPEFNSGLDGWSPFGGSMLEIRSDEDGNEYLVARGRQNSYDSPSQHLNVTQGLMYSLSAWLQIGGENTSSAVVKATVATRSGGVTRYNCAGTVVARTGCWSLLKGGLNLDISPESATLYFESPDTRVEIWLDSVSFQPFSVDQWQWQQETSIEKNRKGIFIIHPINSTGQSLKEAKLFINQTRRDFPIGSAIAKTILGNDAYQKWFVERFNVATFENELKWYSTESQQGRENYTDADNMVSFCKTNNISIRGHNIFWEDPMYTPQWVKSLGAQQLQEAVDTRIRSLVGRYQGQFLSWDVSNEMLHFSFFEDMLGPNASTNFFQLAQQLDPSTPMFMNDYNTIEACNDLNAIPDAYLKKLSDINQPLLMEGIGLESHFSKPNIPFMRSVLDKLGSKGLPIWLTEVDITNTGNQTKQGEYLELVLREAFSHPAVNGIVMWSALHPYGCYRMCLTDNNFTNLPTGDVVDKLMAEWSTMDISGFTDESGTFNFSGYFGEYTVTVTHPSIPSTTTSFKVSKDVAAADQPQHIDLLV*

Protein Length: 593

Fln nts: CTAGTTTTTTACAAAACCTGGATTACACGTACTGCCACTCATTTTATGTAGATAAAGTAATCTGGAATGTGCTCAATGCCTTTTTCTGGTTTTTGCAAACCCTGGGCTACACTCACTGCCACTTAGTTTTAAACCACTTAGTTTTTTTTTAATTATGTTCCCTTTATTCGTGTGTAGATGTATATATAAAGCAATGTGGGTTGTGATCAATGCCAACCAAACTAAAATTCCAGTGAAGGCTATAGAACTGTAGCCAAGCTTGTTCTGTTTTTCTTGCAGAAGGTATATTGCT_-_ATGGATACCCACTATCCAAACGCTCTGCTGGTGTGTTTCAATATAGTTCTGGTGTTCTTGGGAGAGCTGAGATCAGCTTCTGCCGACGACAACAGTACTGGACCCCTGTACAATTCTTTCGCTACAACAGAGTGCCAGAAACAGCCACCGCCATCTTCATACGGCGGAGGGATTGTTGCGAACCCGGAATTCAACAGTGGACTGGATGGCTGGAGCCCTTTTGGAGGCAGTATGCTGGAAATTCGATCGGACGAGGATGGGAACGAGTATTTGGTGGCCCGTGGAAGACAAAACAGCTATGATTCGCCCTCGCAGCATCTCAATGTAACACAAGGACTGATGTATTCGCTTTCAGCGTGGCTGCAGATCGGTGGAGAAAATACTTCGAGTGCAGTTGTTAAAGCCACCGTAGCTACAAGGAGTGGAGGTGTCACGAGGTATAACTGCGCCGGGACTGTAGTTGCACGCACTGGTTGCTGGTCTCTGCTCAAAGGAGGCCTTAATCTAGATATCTCTCCAGAATCGGCCACATTATACTTTGAGAGCCCAGATACGAGAGTAGAAATCTGGCTGGATAGCGTATCATTTCAGCCATTCAGTGTAGACCAGTGGCAATGGCAACAGGAAACCAGTATTGAAAAGAATCGCAAGGGAATTTTTATCATTCACCCTATCAACAGTACGGGGCAGAGCCTGAAAGAAGCCAAGCTATTCATCAATCAAACCAGGAGAGACTTCCCCATAGGATCCGCCATAGCCAAGACCATATTGGGCAATGATGCTTATCAGAAATGGTTCGTGGAACGTTTCAACGTAGCAACGTTCGAGAACGAGCTGAAGTGGTACAGCACAGAGTCCCAGCAAGGAAGAGAGAATTATACAGACGCTGATAATATGGTGAGCTTCTGCAAAACAAACAACATATCCATCCGTGGTCATAACATATTCTGGGAAGATCCGATGTATACTCCACAATGGGTAAAAAGCCTCGGTGCCCAGCAACTCCAAGAGGCGGTGGACACTCGGATTCGTTCACTGGTGGGAAGATACCAGGGTCAATTTCTCAGCTGGGATGTAAGCAACGAGATGCTTCATTTTTCATTCTTTGAAGACATGTTAGGACCCAATGCCTCCACTAATTTCTTCCAACTCGCCCAGCAATTGGATCCATCCACCCCCATGTTCATGAACGACTACAATACAATCGAGGCCTGCAACGACTTGAACGCCATACCTGATGCATATCTGAAGAAACTCAGTGACATAAACCAGCCATTGCTCATGGAAGGAATAGGGTTGGAATCCCATTTTTCAAAGCCCAATATACCATTCATGCGCTCCGTATTGGACAAATTGGGCTCTAAGGGTTTACCAATCTGGCTTACAGAAGTCGACATTACAAATACAGGAAACCAAACCAAACAGGGAGAGTACTTGGAACTGGTATTGCGCGAAGCATTTTCTCACCCAGCTGTGAATGGTATCGTTATGTGGTCGGCATTGCATCCCTACGGATGTTACAGGATGTGTCTCACAGACAATAATTTCACCAACCTTCCCACAGGAGATGTGGTGGACAAATTGATGGCAGAATGGAGTACCATGGATATCAGTGGGTTCACTGATGAGAGCGGGACCTTCAATTTCTCAGGATATTTTGGGGAGTATACGGTCACTGTAACGCATCCCAGCATTCCTAGTACTACCACTTCTTTCAAGGTCTCCAAGGATGTAGCTGCTGCAGACCAACCACAACACATTGATCTTCTTGTCTAACTATTTTAGTGAATCTCAAGTTCAGATCAATCTTTTCCTAATTTCTCCTGAGCTAAAATCTGACTATCTTGTTCGCTATGGTTTCTGGTTTGTTTTGTTTTTTTAAACTCACATGTTTCTTCCCAACCCATTTACTTAGCAGCCTGATAAAATTTGAACACAAACAACATTATTAAC

Fln Alignment:

Contig1725___YNSFATTECQKQPPPSSYGGGIVANPEFNSGLDGWSPFGGSMLEIRSDEDGNEYLVARGRQNSYDSPSQHL-NVTQGLMYSLSAWLQI-GGENTSSAVVKATVATRSGGVTRYNCAGTVVARTGCWSLLKGGLNLDISPESATLYFESPDTRVEIWLDSVSFQPFSVDQWQWQQETSIEKNRKGIFIIHPINSTGQSLKEAKLFINQTRRDFPIGSAIAKTILGNDAYQKWFVERFNVATFENELKWYSTESQQGRENYTDADNMVSFCKTNNISIRGHNIFWEDPMYTPQWVKSLGAQQLQEAVDTRIRSLVGRYQGQFLSWDVSNEMLHFSFFEDMLGPNASTNFFQLAQQLDPSTPMFMNDYNTIEACNDLNAIPDAYLKKLSDINQPLLMEGIGLESHFS-KPNIPFMRSVLDKLGSKGLPIWLTEVDITNTGNQTKQGEYLELVLREAFSHPAVNGIVMWSALHPYGCYRMCLTDNNFTNLPTGDVVDKLMAEWSTMDISGFTDESGTFNFSGYFGEYTVTVTH
D8SC47______________YDQTAFSECLAAPTSPLYNGGVLKNPAFDADLLGWSPFGGCTLKIQV-QGRNKFLVATNRNAGFHGPSQALANLTQGSKYTLSAWLQVNGGSDDTAPLVKATIKANG----QYISAGSVAARNKCWTFLKGGFIPEFNASSATLYFESSDPKVDIWLDSVSLQPFSDEEWSKHQDISIKKSRTRSVTLSVTDCKGHGIHNADIQVEQITGDFPFGSAIASTILDNPTYQKWFVTRFNTAVFENEMKWYSTERQQGKVSYETADKMLDFCKANNILVRGHNVLWNDPQYQPGWVKDLSASELRTATMSRIESVMSHYAGKLPQWDVLNEMLHFNFFESKLGSNAAVEIYKFAQEIDPETTLFLNDFNVIE-------MKAAGIKKL----------GIGLEGHFSGKPNLVYMRAVLDKLATLELPIWLTEVDIMNSVDSENQAIYLQQVLREAFSHPAVKGIVLWTALHPYGCYRMCLTDQNFKNLPAGNIVDVFLKNIRTVGLSGTTDHEGSFSFQGFHGEYEISVTH

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1313			25	75	0.996473
1367		66		33	1.0
1515	85	14			0.993533
1650	81			18	0.999994
1651	81			18	0.999994
1652	81			18	0.999994
1991		75		25	1.0
2096	27		72		1.0
2104		70	30		1.0
2106	70		30		1.0
2136		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain