SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1707

Length: 1160 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1707 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CCAAT-box binding factor HAP3 n=3 Tax=Selaginella moellendorffii RepID=D8RRZ5_SELML	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	ccaat-box binding factor hap3	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	84%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3	Transcription factor, CBFA/NFYB, DNA topoisomerase	IPR003957	-	-
Sma3	Transcription factor, NFYB/HAP3, conserved site	IPR003956	-	-

Full-Lengther Next Prediction

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
466		84	15		0.999986
469		84	15		0.999986
471	15			84	0.999986
472			15	84	0.999986
478		84	15		0.999986
482	14			85	0.999981
483		14		85	0.999981
484	85		14		0.999981
488	85		14		0.999981
814			13	86	0.999973
816		86	13		0.999973
817	13			86	0.999973
818		13		86	0.999973
819	13		86		0.999973
821	86	13			0.999973
823	11		88		0.999952
824	11		88		0.999952
825			11	88	0.999952
829	11	88			0.999952
830		11		88	0.999952
831		5		82	0.999919
833	11		88		0.999952
914		11		88	0.923564
915		11	88		0.923564
916	11	88			0.923564
918		87	12		0.992554
919	12	87			0.992554
921	12		87		0.992554
923		12	87		0.992554
926	11			88	0.923564
927			11	88	0.923564
928	88		11		0.923564
929			88	11	0.923564
930	88	11			0.923564
933		88	11		0.923564
934	11	88			0.923564
935		11		88	0.923564
1110		11	66	22	0.999999
1111	11	66	22		0.999999
1112	77	11	11		0.968132
1113	55	11	22	11	0.999999
1114	66		11	22	0.999999
1115			22	11	0.999999
1119	62		37		1.0
1122	33	66			1.0
1124			33	66	1.0
1125		66	33		1.0
1129	60	40			1.0
1130	60		40		1.0
1131	40	60			1.0
1137	33			33	0.997753
1138			33	33	0.997753
1139	33	66			0.997452
1140		66	33		0.997452
1141		66		33	0.997452
1142		66	33		0.997452
1144		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain