SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1693

Length: 2615 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1693
ATATGGTGACATCTCTGGTTTTGGTGATAGTACTTTTACTGAAGGGCCATCTGTAAAAGAAGCAGCAGCTGTTACTGCACTTTGTGCATTTTTGCATGTTTCTATCACAATGTTACCCCTTGAGAATGTCATGACTGGACTTGCATATACAACTGAACTCGTCCCTACTCTTTGGCACTACATGAAACGGTGTCACTTGAGCCAAAGGTGGCCATCTATGGAGGCTTTAGCAGAATTTTTCCCAGGAGATGCTCCGGGTTGGTTGTTGCCTCTTTCTGTTTTCTGCCCATTGTACAGGCATATGTTGATGATTATTGATAATGAGGAGTTCTACGAGCAACAGAAGCCTCTTCCATTGCAAGATGTCAAGGCTTTAGTTATCATTTTAAAAGAGGCATTATGGCAGCTGCTATGGGTGATCCCCTCTAAGACTTCTGCACCTCAGAAGACTGTTCATTTTGGATCAAATCAAAAGAGATTTCCATTACAATCTATCCGAGAGAGAGTCAGCACAGTAGCAGCTGAACTCTTGGCACAGTTGCAGGATTGGAATTGTAGGAGAGAATTTACATCACCAAATGATTTTCATGCTCGTGATGCAGTTGATGGAATGTTCTATGCTCAGGCTGGAAGTGAAAATTCAAGAGCCCATGAGCTACTGAAACGAGCACCATTCTTAGTGCCATTTACAAACAGGGTTCAAATTTATACTTCTCAGTTAGCTGCAGCCAGACAACAAAACAGTTTTCACACACCCTTTGTACGGCACCGAATCAGGATAAGGCGGAATCGGGCTGTTGAGGATGCCTTCACTGAACTAAATGGATTGACAGGAGAAGAACTTAGGGGAATGATTCGTGTAATATTTGTGAATGAATTTGGAGTTGAAGAGCCTGGTGTTGATGGCGGTGGTATTTTCAAAGATTTTATGGAGAACATAACAAAAACAGCCTTTGATATACAGTATGGACTTTTCAAGGAAACTGCTGATCATCTTCTCTATCCAAATCCTGCATCAGGCACAATACATCCTGAACATCTCCAATATTTTGAGTTCCTTGGAAAAATTCTTGGAAAGGCAATGTTTGAAGGGATTTTAGTTGACATACCATTTGCCACATTCTTTTTGAGCAAGCTCAAAGAAAAGCATAACTATTTACACGATTTGCCTTCTTTGGATCCTGAGCTTTATCGAAATCTTTTGTCCCTAAAGCATTATGATGGTGATGTTTCCCAACTGGGGCTCTATTTTGTCAGTGAAAATAATGAGTATGGTGAACAGAAGGAGGAGGAAATGCTACCAGGTGGAAGGGATATGCAAGTTACTAATGAAAATGTTATCAAGTTCATCCATCTTATGGCAAACCACCACCTGAACAGTCAAATACGCAATCAAAGCTCTTATTTTTTGCGAGGATTTCGACAGCTGATACAGTCTGATTGGTTAGACATGTTTAATGAACATGAACTTCAGCTTCTTATTTCAGGCTCAACAGAGGGTATGGATGTTGATGGCTTACGTTCAAATGTTCATTATGCTGGCGGTTATAGTGAGGATCATCCTATCATTGAGATGTTCTGGGAGGTAATTAAGCAATTCAGTTTGGAGCAGCAAAAGAAGTTTTTGAAATTTGTAACTGGATGCTCTCGAGGACCATTACTTGGCTTCAAACACTTGGAACCTCCATTCTGCATTCAAAGAGCTGCTCCTGAAGATGCCCCTGAAGAAGTGCTTGACCGCCTGCCAACCTCGGCAACATGTGTGAATCTTCTTAAGCTCCCTCCCTACAGAAGTAAAGATGTGCTTCGCCGTAAGCTGCTCTATGCAATCAGTGCTGATGCAGGATTTGATCTTAGCTAAGCAGTAAATTTGATTCCTCAGTGCCACTTGATTCCTTAATTGCCTGTCATGTTGCTTATGGAGATTTACTTATAGTCATTTTATATATGACCTTATTCCAAGAAGCAATGAAGTTGAGGTGTTGTGGTGATCAACAGCAATGATTGGAGGGTGGGATCTGTTTGTTCTACATGATCAGATTTACTTGTATGGAGCAGCAATGTAGATCCAGGTTGGCTTCAAAACATATGAAAATAATATCTACAAAGCATTTCATTCTACAAATTGCTGTCTTTGGAGGAGAGAATAATGTACAACAGTAATAGCTATCCCTACAGTATGTGTCTTCTGTGGTCAGATCATTCTAATCCATTCTCTAGAAATGTTGCAAACAGCTGAAATTTTGAGAATGCTTATATGCTTCCCAGAGGTCTGATAGCACAGAAGACACTTGCGCTCAATCTTGAAGTGTATTTCACCATGCTACACAGGTTGGCATATGTAGGGTATTGTAAATGATGTAATTGTCAATAATTAATTTGCCAGCAGCCTCCCATTTTGTGCCATTTTGTTCATATAATTGCCATTGAGATGTCCTGTCATTTCGTTTAATTTTTGTAATGGCAAAAGAGGCCGAGGCAGTAATAAGAATGATATTTCATCTTAAACGATGTAAAAGATGCAGAACATGTGTCATACATCTCAACTTTCATGGTAATGCTAAAGATGATATCCTGCAGTATTTGGAGATTATATTCATACAATGAGTGCTGAA

Ace file of the UniGene sp_v2.0_unigene1693 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] ref\|NP_001189915.1\| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] sp\|Q8RWB8.1\|UPL6_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL6; Short=Ubiquitin-protein ligase 6 gb\|AAM13201.1\| unkn	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	e3 ubiquitin-protein ligase upl6	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	81%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	81%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	HECT	IPR000569	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKQ9

Fln msg: your sequence is shorter than subject: 620 - 1032

Fln protein: YGDISGFGDSTFTEGPSVKEAAAVTALCAFLHVSITMLPLENVMTGLAYTTELVPTLWHYMKRCHLSQRWPSMEALAEFFPGDAPGWLLPLSVFCPLYRHMLMIIDNEEFYEQQKPLPLQDVKALVIILKEALWQLLWVIPSKTSAPQKTVHFGSNQKRFPLQSIRERVSTVAAELLAQLQDWNCRREFTSPNDFHARDAVDGMFYAQAGSENSRAHELLKRAPFLVPFTNRVQIYTSQLAAARQQNSFHTPFVRHRIRIRRNRAVEDAFTELNGLTGEELRGMIRVIFVNEFGVEEPGVDGGGIFKDFMENITKTAFDIQYGLFKETADHLLYPNPASGTIHPEHLQYFEFLGKILGKAMFEGILVDIPFATFFLSKLKEKHNYLHDLPSLDPELYRNLLSLKHYDGDVSQLGLYFVSENNEYGEQKEEEMLPGGRDMQVTNENVIKFIHLMANHHLNSQIRNQSSYFLRGFRQLIQSDWLDMFNEHELQLLISGSTEGMDVDGLRSNVHYAGGYSEDHPIIEMFWEVIKQFSLEQQKKFLKFVTGCSRGPLLGFKHLEPPFCIQRAAPEDAPEEVLDRLPTSATCVNLLKLPPYRSKDVLRRKLLYAISADAGFDLS*

Protein Length: 621

Fln nts: ATATGGTGACATCTCTGGTTTTGGTGATAGTACTTTTACTGAAGGGCCATCTGTAAAAGAAGCAGCAGCTGTTACTGCACTTTGTGCATTTTTGCATGTTTCTATCACAATGTTACCCCTTGAGAATGTCATGACTGGACTTGCATATACAACTGAACTCGTCCCTACTCTTTGGCACTACATGAAACGGTGTCACTTGAGCCAAAGGTGGCCATCTATGGAGGCTTTAGCAGAATTTTTCCCAGGAGATGCTCCGGGTTGGTTGTTGCCTCTTTCTGTTTTCTGCCCATTGTACAGGCATATGTTGATGATTATTGATAATGAGGAGTTCTACGAGCAACAGAAGCCTCTTCCATTGCAAGATGTCAAGGCTTTAGTTATCATTTTAAAAGAGGCATTATGGCAGCTGCTATGGGTGATCCCCTCTAAGACTTCTGCACCTCAGAAGACTGTTCATTTTGGATCAAATCAAAAGAGATTTCCATTACAATCTATCCGAGAGAGAGTCAGCACAGTAGCAGCTGAACTCTTGGCACAGTTGCAGGATTGGAATTGTAGGAGAGAATTTACATCACCAAATGATTTTCATGCTCGTGATGCAGTTGATGGAATGTTCTATGCTCAGGCTGGAAGTGAAAATTCAAGAGCCCATGAGCTACTGAAACGAGCACCATTCTTAGTGCCATTTACAAACAGGGTTCAAATTTATACTTCTCAGTTAGCTGCAGCCAGACAACAAAACAGTTTTCACACACCCTTTGTACGGCACCGAATCAGGATAAGGCGGAATCGGGCTGTTGAGGATGCCTTCACTGAACTAAATGGATTGACAGGAGAAGAACTTAGGGGAATGATTCGTGTAATATTTGTGAATGAATTTGGAGTTGAAGAGCCTGGTGTTGATGGCGGTGGTATTTTCAAAGATTTTATGGAGAACATAACAAAAACAGCCTTTGATATACAGTATGGACTTTTCAAGGAAACTGCTGATCATCTTCTCTATCCAAATCCTGCATCAGGCACAATACATCCTGAACATCTCCAATATTTTGAGTTCCTTGGAAAAATTCTTGGAAAGGCAATGTTTGAAGGGATTTTAGTTGACATACCATTTGCCACATTCTTTTTGAGCAAGCTCAAAGAAAAGCATAACTATTTACACGATTTGCCTTCTTTGGATCCTGAGCTTTATCGAAATCTTTTGTCCCTAAAGCATTATGATGGTGATGTTTCCCAACTGGGGCTCTATTTTGTCAGTGAAAATAATGAGTATGGTGAACAGAAGGAGGAGGAAATGCTACCAGGTGGAAGGGATATGCAAGTTACTAATGAAAATGTTATCAAGTTCATCCATCTTATGGCAAACCACCACCTGAACAGTCAAATACGCAATCAAAGCTCTTATTTTTTGCGAGGATTTCGACAGCTGATACAGTCTGATTGGTTAGACATGTTTAATGAACATGAACTTCAGCTTCTTATTTCAGGCTCAACAGAGGGTATGGATGTTGATGGCTTACGTTCAAATGTTCATTATGCTGGCGGTTATAGTGAGGATCATCCTATCATTGAGATGTTCTGGGAGGTAATTAAGCAATTCAGTTTGGAGCAGCAAAAGAAGTTTTTGAAATTTGTAACTGGATGCTCTCGAGGACCATTACTTGGCTTCAAACACTTGGAACCTCCATTCTGCATTCAAAGAGCTGCTCCTGAAGATGCCCCTGAAGAAGTGCTTGACCGCCTGCCAACCTCGGCAACATGTGTGAATCTTCTTAAGCTCCCTCCCTACAGAAGTAAAGATGTGCTTCGCCGTAAGCTGCTCTATGCAATCAGTGCTGATGCAGGATTTGATCTTAGCTAA___GCAGTAAATTTGATTCCTCAGTGCCACTTGATTCCTTAATTGCCTGTCATGTTGCTTATGGAGATTTACTTATAGTCATTTTATATATGACCTTATTCCAAGAAGCAATGAAGTTGAGGTGTTGTGGTGATCAACAGCAATGATTGGAGGGTGGGATCTGTTTGTTCTACATGATCAGATTTACTTGTATGGAGCAGCAATGTAGATCCAGGTTGGCTTCAAAACATATGAAAATAATATCTACAAAGCATTTCATTCTACAAATTGCTGTCTTTGGAGGAGAGAATAATGTACAACAGTAATAGCTATCCCTACAGTATGTGTCTTCTGTGGTCAGATCATTCTAATCCATTCTCTAGAAATGTTGCAAACAGCTGAAATTTTGAGAATGCTTATATGCTTCCCAGAGGTCTGATAGCACAGAAGACACTTGCGCTCAATCTTGAAGTGTATTTCACCATGCTACACAGGTTGGCATATGTAGGGTATTGTAAATGATGTAATTGTCAATAATTAATTTGCCAGCAGCCTCCCATTTTGTGCCATTTTGTTCATATAATTGCCATTGAGATGTCCTGTCATTTCGTTTAATTTTTGTAATGGCAAAAGAGGCCGAGGCAGTAATAAGAATGATATTTCATCTTAAACGATGTAAAAGATGCAGAACATGTGTCATACATCTCAACTTTCATGGTAATGCTAAAGATGATATCCTGCAGTATTTGGAGATTATATTCATACAATGAGTGCTGAA

Fln Alignment:

Contig1693___YGDISGFGDSTFTEGPSVKEAAAVTALCAFLHVSITMLPLENVMTGLAYTTELVPTLWHYMKRCHLSQRWPSMEALAEFFPGDAPGWLLPLSVFCPLYRHMLMIIDNEEFYEQQKPLPLQDVKALVIILKEALWQLLWVIPSKTSAPQKTVHFGSNQKRFPLQSIRERVSTVAAELLAQLQDWNCRREFTSPNDFHARDAVDGMFYAQAGSENSRAHELLKRAPFLVPFTNRVQIYTSQLAAARQQNSFHTPFVXXXXXXXXXRAVEDAFTELNGLTGEELRGMIRVIFVNEFGVEEPGVDGGGIFKDFMENITKTAFDIQYGLFKETADHLLYPNPASGTIHPEHLQYFEFLGKILGKAMFEGILVDIPFATFFLSKLKEKHNYLHDLPSLDPELYRNLLSLKHYDGDVSQLGLYFVSXXXXXXXXXXXEMLPGGRDMQVTNENVIKFIHLMANHHLNSQIRNQSSYFLRGFRQLIQSDWLDMFNEHELQLLISGSTEGMDVDGLRSNVHYAGGYSEDHPIIEMFWEVIKQFSLEQQKKFLKFVTGCSRGPLLGFKHLEPPFCIQRAAPEDAPEEVLDRLPTSATCVNLLKLPPYRSKDVLRRKLLYAISADAGFDLS
B8LKQ9______________YGDISGFGDSTSIEGPSEKEAAAVTALCAFLHVSITMLPLENVMTGLAYTTELVPTLWHYMKRCHLSQRWPSMEALAAFFPGDAPGWLLPLSVFCPLYRHMLMIIDNEEFYEQQKPLSLQDVKALVIILKEALWQLLWVIPSKTSTPQKPVHSGSNQKRFPLQSIRERVSTLAAELLAQLQDWNCRREFTSPNDFHARDAVDGMFYAQAGSENSRAHELLKRAPFLVPFTNRVQIYTSQLAAARQQNSFHTPFVRHRIRIRRNRAVEDAFSELNGLTGEELRGMIRVIFVNEFGVEEPGVDGGGIFKDFMENITKTAFDIQYGLFKETADHLLYPNPASGTIHPEHLQYFEFLGKILGKAMFEGILVDIPFATFFLSKLKEKHNYLHDLPSLDPELYRSLLSLKHYDGDVSELGLYFVSENNEYGEQKEEEMLPGGKDMQVTNENVIKFIHLMANHHLNSQIRNQSSYFLRGFQQLIQSDWLNMFNEHELQLLISGSTEGMDVDGLRSNVHYAGGYSEDHPVIEMFWEVIKQFSLEQQKKFLKFVTGCSRGPLLGFKYLEPPFCIQRAAPEDAPEEVLDRLPTSATCVNLLKLPPYRSKDVLRSKLLYAISADAGFDLS

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1193	33		66		0.997452
1209	33	66			0.997452
1210	33	33			0.997753
1325		80		20	0.995493
1412		33		66	0.997452
1479	14			85	0.993533
1481	14			85	0.993533
1488		16		83	0.994512
1489		16		83	0.994512
1490		16	83		0.994512
1491	16	83			0.994512
1653		66		33	0.997452
2529	80			20	0.995493
2530	80		20		0.995493
2532	80		20		0.995493
2541	80	20			0.995493
2545			20	80	0.995493
2546			80	20	0.995493
2549		20	80		0.995493
2550			20	80	0.995493
2552	80	20			0.995493
2553		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain