SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1668

Length: 1752 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1668 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RMJ9_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	dna-binding protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	70%
Blast2go	identical protein binding	GO:0042802	Molecular Function	70%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	70%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	70%
Blast2go	nucleus	GO:0005634	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	SANT/Myb domain	IPR001005	-	0.0	-
Sma3	Myb-like domain	IPR017877	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQR4

Fln msg:

Fln protein: MEAIPNGVPPLPLAMPFQQQQQQHMVLTESSGDDHELRAPKKRAETWVQDEIQTMLVYRKELESLFNTSKSNKHLWEQISQRMRQRGYERSPTMCKDKWRNLLKDYRKLRHQQKPDTPKLGYYKDIEDVMVERAKHTPHRSPVKYESTIQMVPKDFDRPALNIDQRLDNDSQTTSLLSHESPLANGMSPWSWRDTSANGLPQWNTAMDRSITAGRVIAVKWGDVTRRVGIDGSAEAIKDAIRSVFGLRSKRAFWLEDEDGVVRCFDRDMPLRTYNLHVDPGVTVKICYYDGSGRPTVTTEEKTLYCEDDLRELLARRGWTALREVGGYKDIDTIEELQPMCVYQQSGLGLYMSKVE*

Protein Length: 358

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTGTGTTCAATCCACTGCGTTCGAACCCCTAATTCAGGTTCACTAACTAGGGTATGCTCTGCACTGCTCTGTGGAGAGTCTATTTTTCATTCCTTTCTGTGCACGGTCACCATTCTCGGCCTCTAAATTCTTGAAAAATTAGGCCCAGAAGTACCCTGTTCGCACCCAATTCGAGCTAAAGATTCGAACGTGTGACCTACCTCTGGCCA_-_ATGGAAGCGATTCCCAATGGCGTGCCCCCGCTTCCGCTGGCCATGCCCTTCCAGCAGCAGCAGCAGCAGCACATGGTCCTCACTGAGAGTAGCGGGGATGACCACGAGCTGCGGGCCCCTAAGAAGAGGGCTGAGACATGGGTTCAAGACGAGATTCAAACCATGCTCGTCTACAGAAAAGAGTTAGAGAGTCTCTTCAATACTTCCAAGTCCAACAAGCACCTATGGGAGCAGATATCGCAGAGAATGAGGCAGAGGGGTTATGAAAGGTCCCCCACCATGTGCAAGGACAAATGGCGGAATCTCCTCAAGGATTACAGGAAGCTCAGGCACCAGCAGAAACCTGACACGCCCAAGCTAGGATATTATAAGGATATCGAAGATGTCATGGTCGAGAGGGCCAAGCATACGCCGCATCGGAGCCCTGTGAAGTACGAATCTACGATTCAGATGGTGCCCAAAGATTTTGACAGGCCTGCTTTAAATATCGACCAAAGGTTGGATAATGACAGCCAAACAACGTCTTTGTTGTCACACGAGTCACCATTGGCAAATGGGATGAGTCCATGGAGTTGGAGGGATACTAGTGCCAATGGCTTACCTCAGTGGAATACAGCAATGGATCGCAGTATAACTGCAGGGAGGGTTATTGCTGTAAAATGGGGTGATGTAACCCGAAGAGTAGGTATTGATGGTTCAGCAGAAGCCATTAAGGATGCCATCAGGAGTGTGTTTGGATTGAGATCGAAACGAGCATTCTGGCTAGAAGATGAAGATGGTGTTGTCCGTTGCTTTGATCGTGACATGCCTCTCAGAACTTACAATCTGCATGTTGATCCAGGTGTGACAGTGAAGATTTGTTATTACGATGGGTCTGGTCGACCAACAGTGACCACCGAGGAGAAGACTTTATATTGTGAAGATGATCTTCGTGAGTTATTAGCACGACGTGGTTGGACAGCATTGCGAGAAGTAGGTGGGTACAAAGACATTGACACGATTGAAGAGCTCCAACCAATGTGTGTCTACCAGCAGAGTGGATTAGGCTTGTATATGTCAAAGGTTGAATGA___TGATTACTTGAATCCTTATTTGTACGTCCTTCAGTAAACTATTTTATCAGATCTTTATGAACTGACCCAAACACGCAAGCCTTCTGGCATCATAAGCTACACTGCCTAGGCTTTTATCAATGCCAATTTTGACTTGGAATCAAGAGGTTATCTGTTCACCAACATCATGGAGGCATCCCAACTGATTGTTACACATTTCTGCTCAGATGAAGCCATTTCAACTACTTGTTATATCTTTCTGCTCAGACGAGGCATCCCAACCGATTGTTGCATATTTGTACTCACATGATTATTTGTGTTCACATGAGTATGTATGTACCATGTGATTGGAGAGCTTTAGATAGATAAAAGTTCATTACCTACTTCAGGTACAGGAAAATGTGTACCACGTTACAATATAAGTTAATTTCTCTACTGCAATAATATACCATGAATCTCTTAGAT

Fln Alignment:

Contig1668___MEAIPNGVPPLPLAMPFXXXXXQHMVLTES-SGDDHELRA-PKKRAETWVQDEIQTMLVYRKELESLFNTSKSNKHLWEQISQRMRQRGYERSPTMCKDKWRNLLKDYRKLRHQQKPD--TPKLGYYKDIEDVMVERAKHTPHRSPVKY---ESTIQMVPKDFDRPALNIDQRLDNDSQTTSLLSHESPLANGMSPWSWRDTSANGLPQWNTAMDRSITAGRVIAVKWGDVTRRVGIDGSAEAIKDAIRSVFGLRSKRAFWLEDEDGVVRCFDRDMPLRTYNLHVDPGVTVKICYYDGSGRPTVTTEEKTLYCEDDLRELLARRGWTALREVGGYKDIDTIEELQPMCVYQQSG
A9NQR4______________MEVVTNG---MQLQAQVQQQHHHHMLLSSDVNGEDHEIKTTPKKRAEVWGHDEIRSLIALRREIDGLFNTSKSNKHLWEKISLKMRERGFDRSPTMCTDKWRNLLKEYKKAKHHHDSHDGSAKMSCYKDLEELLRERAKVAPYRSPNKVAALDSYPHFSPKGTGRSPFNLERRLDHDGLPLALPLSDATAANGTPPWNWRDATGNG------GENHTSYNGKVILVKWGDITRRIGIDGTAEAISGAIRPAFGLRTKRAFWLQDEDGVVHSLDRNMPLGTYILCLDEGLTIKVCNYDESDSLTGTADEKTFYTEEDFRYFLTQRGWSGLQEVGGFRTVDSLNELCPMCVYQRAG

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
941	25	75			0.996473
985	80		20		0.995493
1257		88		11	0.923564
1345	88			11	0.923564
1350	88			11	0.923564
1356		11	88		0.923564
1357		11		88	0.923564
1358	11			88	0.923564
1359	11			88	0.923564
1362	88		11		0.923564
1365	11			88	0.923564
1368	11			88	0.923564
1370			11	88	0.923564
1395		25		75	0.996473
1644	10			90	0.90298
1646			90	10	0.90298
1647	90			10	0.90298
1648		90	10		0.90298
1649	10			90	0.90298
1650		90	10		0.90298
1653		90	10		0.90298
1658	90	10			0.90298
1659		10	90		0.90298
1660	10	90			0.90298
1663			10	90	0.90298
1664			90	10	0.90298
1693	88		11		0.923564
1695			11	88	0.923564
1697		11	88		0.923564
1698	11		88		0.923564
1700		11	88		0.923564
1701		11		88	0.923564
1702	11			88	0.923564
1703	11	88			0.923564
1705	88		11		0.923564
1706	88			11	0.923564
1708	11		88		0.923564
1712	11			88	0.923564
1713		11	88		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
1445	1464	TGC TGC TGC TGC TGC TGC TG	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain