SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1655

Length: 1709 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1655

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase family 61 protein [Arabidopsis thaliana] gb\|AAF02811.1\|AC009400_7 unknown protein [Arabidopsis thaliana] gb\|AAO64189.1\| unknown protein [Arabidopsis thaliana] gb\|AAP04088.1\| unknown protein [Arabidopsis thaliana] dbj\|BAF00327.1\| hypoth	-	-	46%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	57%
Blast2go	glycosyltransferase family 61 protein	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	Glycosyltransferase AER61, uncharacterised	IPR007657	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9II89

Fln msg: Warning!, your query overlaps and the subject is separated,

Fln protein: MLGETEENLVALPTEKGERYNSTAAIDFRKNESQPRESTIICDRSSYRTDVCIMKGDIRTHPASSTLFLVSNPLHRDSSRKGNxxxxxYTRKWENHTMSSVDELSLERTDPAHAPQCQVTHSVPALVFSTGGYTGNLFHDFTDVIVPLFITSYHLKGQVVFVIPNHKPWWTAKFGDIIRQLSSYEILDFREEINPATHCFPEAIVGLRFHGDLWVDPALSPNKYTITDFQNMLRKAFQDNNKKSIFQYSLLKSLRPKLVLIARKGSRVFLNQREIVKVAEKLGFRVMILSPDVNTQLKDMYKIINSCDVFMGIHGAALTHFLFLPPGGVFVQVVPLGIEWASRTFFRGPATKMDTVEYLEYQILPQESSLYDKYPKDHPYLSDPQSVNRRGWNATKEVYMDNQNVKLHLPRFKRMLIKALDLLHSKTNANGGVRESRKS*

Protein Length: 441

Fln nts: AGGATCG_-_ATGCTCGGGGAGACAGAAGAAAACCTTGTGGCCTTGCCCACAGAAAAGGGAGAGCGTTATAACTCGACAGCAGCAATAGATTTCAGGAAAAATGAAAGCCAACCTAGGGAAAGCACGATAATTTGCGACAGATCCTCATACAGAACAGATGTATGCATCATGAAAGGCGATATCAGGACTCACCCTGCCTCTTCAACCCTTTTCCTAGTCTCCAACCCCCTGCATCGCGACAGCAGCAGGAAGGGAAATxxxxxxxxxxxxxxxTACACGCGCAAATGGGAGAATCACACAATGTCCTCAGTGGACGAGCTATCGCTGGAAAGAACAGATCCCGCACACGCCCCACAGTGCCAAGTGACCCATTCCGTTCCAGCGCTGGTGTTCTCCACAGGGGGCTACACAGGCAACCTCTTCCACGACTTCACAGATGTAATAGTCCCCCTTTTCATAACCTCCTACCATCTCAAAGGCCAGGTGGTCTTCGTGATACCAAATCACAAGCCCTGGTGGACTGCAAAGTTCGGGGACATCATAAGGCAGCTCTCGTCCTACGAAATCCTGGATTTCAGAGAAGAGATAAATCCCGCAACCCATTGCTTTCCAGAGGCCATTGTAGGCCTGCGTTTTCATGGGGATCTGTGGGTCGATCCCGCGCTCAGTCCAAATAAATACACAATTACAGATTTCCAGAATATGCTCCGCAAGGCTTTCCAAGATAACAATAAGAAATCGATCTTTCAATATTCATTACTCAAATCGCTGAGGCCTAAACTTGTCCTAATTGCCCGCAAGGGATCCAGAGTTTTCTTGAACCAGAGAGAAATCGTTAAGGTAGCAGAGAAATTGGGTTTCAGGGTCATGATTCTGTCGCCAGATGTGAACACCCAATTGAAAGACATGTATAAAATTATCAATTCCTGCGATGTTTTCATGGGAATCCATGGTGCGGCATTGACACATTTTCTGTTTCTTCCACCGGGGGGCGTTTTTGTGCAGGTTGTCCCTCTGGGAATAGAGTGGGCTTCTCGGACTTTCTTCAGAGGGCCGGCCACGAAGATGGATACAGTCGAATACCTTGAGTACCAAATCCTGCCGCAGGAAAGCTCTCTGTATGATAAGTATCCCAAGGATCATCCGTATCTGAGCGATCCACAGTCTGTGAATCGTAGAGGGTGGAATGCGACGAAGGAGGTGTACATGGACAACCAGAATGTGAAATTGCATTTGCCTCGCTTCAAGCGGATGTTGATCAAAGCATTGGATCTGCTTCACTCCAAAACTAATGCGAATGGGGGCGTGAGAGAATCCAGAAAATCGTAA___TGGGGAATTTGCATTTATGTAAATTTGTATCCAGAACCAGAGTTGTAGATATTGGGCCTTATAATCGGCTGAGTATCTACCCCACACAGAGGGTTGTTCTCTGCAATATTTATCTCCCGCGTGAGAGAGTGTGTAGGAGCATTTATTCATCCAACTCGCGGTTTAATAACAGACCAGAGGCTAGGGATGTTCTTCGCATTTTTACTGTTTATATTTTATATCTTTACAGGCTGGCATTTCGGACATTCATTGAAATCAATTGTTCAACTTCGTTGACAATTGGATTTTTGAGAAATCATAGCAAAGTGGTGTTTCCGGAATGTCGTGAAACAGTTTTTATTCCACAAATAAAGAGAAATGTCGTTCAAAGTTTGGTTTCTGAC

Fln Alignment:

Contig1655___TIICDRSSYRTDVCIMKGDIRTHPASSTLFLVSNPLHRDSSRKGNSESNxxxxxxxxxxxxxxxRIKPYTRKWENHTMSSVDELSL-ERTDPAHAPQ-CQVTHSVPALVFSTGGYTGNLFHDFTDVIVPLFITSYHLKGQVVFVIPNHKPWWTAKFGDIIRQLSSYEILDFREEINPATHCFPEAIVGLRFHGDLWVDPALSPNKYTITDFQNMLRKAF----------------------QDNNKKSIFQYSLLKSLRPKLVLIARKGSRVFLNQREIVKVAEKLGFRVMILSPDVNTQLKDMYKIINSCDVFMGIHGAALTHFLFLPPGGVFVQVVPLGIEWASRTFFRGPATKMDTVEYLEYQILPQESSLYDKYPKDHPYLSDPQSVNRRGWNATKEVYMDNQNVKLHLPRFKRMLIKALDLLHSKTNA
B9II89______________TICCDRSSMRSDVCVMKGDVRTHSASSSIFLF-------TSRNNNSVMNxxxxxxxxxxxxxxxKIKPYTRKWETSVMDSIDELGLIAKTENSRINHHCDVMHDVPAVFFSTGGYTGNVYHEFNDGILPLYITSQHFKKKVVFVILDYHNWWIMKYGNILSLLSDYPAIDFSGD--KKTHCFPEAIAGLRIHDELTVDPSLMQENKSIVDFRNFLDRAYWPRIKSMIKGEERGAQKKLELKAHSSKKNLKQVHEATLKKPKLVILSRNGSRAITNENLLVKMAEEIGFRVEVMRPEPTTELARIYRALNSSEVMIGVHGAAMTHFLFMKPGSVFIQVIPLGTEWAADAYYGEPARKLG-LKYIGYQILPRESSLYDKYDKNDPVLRDPRSVSDKGWQYTKSIYLDNQNVRLNLGRFQRRLLRAYRYSIAKVNS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
352		83	16		0.994512
393	16			83	0.994512
396		83		16	0.994512
655		75		25	0.996473
686	80	20			0.995493
687		20		80	0.995493
688		20		80	0.995493
787		88		11	0.923564
959	16		83		0.994512
966		83		16	0.994512
1282		66		33	0.997452
1512		30		69	1.0
1642			85	14	0.993533
1648			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain