SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1651

Length: 1784 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1651 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM34_MARPO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	57%
Blast2go	protein	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	69%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	69%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	69%
Blast2go	cell part	GO:0044464	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	TNFR/CD27/30/40/95 cysteine-rich region	IPR001368	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8R2R4

Fln msg: your sequence is longer than subject: 426 - 324

Fln protein: MKPCLGSRGCVSFYSQPENAHYGYRLQHGKKSSIGVVVGASLCGFVTLVIIFVGLRALKIRKKHLVNLVNLEVLVGHPQRSPASNTAEPWDVPNGIRRFDLEEILKATEHFNKARELGCGGFGRVYKGYLGNGCVVAAKRASPSSIQGQKQFQNEIVTLSRLHHRCLVKLEGFCQEAGEQVLVYEFMKNGNLDGLIWDERRRATLGWYKRIEIAIAVAQGLDYLHSFAEPPIIHRDIKPSNILLDEHLNAKLSDFGISRTTTDFINTYISTGPAGTVGYVDPHYFLRKHLTLSSDVYSYGVVLLVLITGQKAIDHDRVEEVNLVEWVKIKSQKDDLESIIDSHLLVREKFPQSFRTVTELALKCAAFERSERPTISEVVNILETVLKNETTYERRKTDPGFDEVLVSSSTTQRSFQDMDSSLTAR*

Protein Length: 427

Fln nts: AGAATTTTAACTGTGTAGAATTTGGGGAAATTGTTTTGATTCGAACGTGGATATCCAT_-_ATGAAACCTTGCTTGGGTTCACGTGGCTGTGTCTCCTTCTATTCTCAACCTGAAAATGCTCACTATGGGTATCGTCTCCAGCACGGCAAGAAATCGAGTATAGGGGTCGTTGTGGGGGCTTCTCTATGTGGTTTTGTCACGCTTGTGATTATTTTTGTTGGACTACGTGCATTAAAGATAAGAAAAAAGCATCTCGTAAATCTCGTAAACCTGGAGGTGCTTGTGGGGCATCCCCAGCGAAGCCCAGCAAGCAATACTGCAGAACCATGGGATGTTCCAAATGGAATACGAAGGTTTGATCTGGAAGAAATTTTGAAAGCCACAGAACACTTCAACAAAGCTCGCGAACTCGGCTGTGGAGGATTTGGTAGGGTTTATAAAGGTTATCTTGGTAATGGATGCGTAGTGGCCGCGAAGAGAGCATCTCCTTCCAGCATTCAAGGGCAGAAGCAGTTTCAGAATGAGATAGTTACTCTTAGCAGGTTACATCATCGATGCCTTGTGAAGCTTGAAGGGTTCTGTCAGGAAGCTGGAGAGCAGGTTCTGGTGTACGAGTTCATGAAAAATGGCAATTTGGATGGTTTGATTTGGGATGAACGAAGACGAGCGACTTTAGGTTGGTACAAAAGGATTGAGATTGCCATCGCCGTCGCACAAGGATTGGATTACTTGCACTCATTTGCTGAACCTCCTATCATACATCGGGACATCAAACCAAGCAACATTTTGCTGGATGAACACTTGAATGCTAAATTATCGGACTTTGGCATCTCGAGGACCACAACAGATTTTATAAATACGTACATTTCAACGGGACCAGCTGGCACCGTCGGGTATGTGGATCCGCACTATTTTCTACGGAAACACTTAACTCTATCCAGTGATGTATATAGTTATGGAGTAGTCTTGCTTGTTCTTATTACAGGGCAAAAGGCCATTGACCATGATCGCGTGGAAGAAGTCAATCTTGTTGAATGGGTCAAGATCAAATCTCAGAAGGATGACTTGGAATCAATTATAGACTCGCATCTTTTAGTACGCGAAAAGTTTCCCCAGAGCTTTAGAACTGTAACTGAACTAGCCTTGAAATGTGCTGCATTTGAGAGATCTGAGCGCCCAACCATAAGCGAAGTTGTAAACATACTGGAGACTGTACTTAAAAACGAGACCACTTATGAGAGGAGAAAAACGGACCCGGGCTTTGATGAGGTACTTGTGAGTAGCTCTACAACTCAGCGATCATTTCAAGATATGGACTCTAGTCTCACTGCCCGTTGA___CATTGACTGGAAGCCCTCGTTGGAGTAGTCCATTTATCTTTCAGTATCTTCTTTTTTCACCCTTCTATATGGGTTTGTACAGGAGGCTTTTCACTGAGATTGTAAACATTGATTATTAATCATTAACTGATATATCTGATTGAATTTCACTGCTGTGGTCATGATTTGTGACTTTTACTAGAAAGGTAATCTCACAGTATCTTTACTAGAAAGTCTGGAATACATTTCACGAATGTTTGGTAACAGTTACTACAATCATACTCTCCATGGAGACCTACTTTACTGGCCCAAAGTGATTCAGCATTTCCATCCAGAGTAAAATTCAGTTCATTCATGAAAAAGCTTTTGGGATTGGACATCTCAAGCTGTTAATTTCGTGAGATATATGTTACTTCCAATCTATTCATTTTGGCTAATTATTTTTTAATGAGCACCTTGAATGTTGTAG

Fln Alignment:

Contig1651___SNTAEP---WDVPNGIRRFDLEEILKATEHFNKARELGCGGFGRVYKGYLGNGCVVAAKRASPSSIQGQKQFQNEIVTLSRLHHRCLVKLEGFCQEAGEQVLVYEFMKNGNLDGLIWDERRRATLGWYKRIEIAIAVAQGLDYLHSFAEPPIIHRDIKPSNILLDEHLNAKLSDFGISRTTTDFINTYISTGPAGTVGYVDPHYFLRKHLTLSSDVYSYGVVLLVLITGQKAIDHDRVEEVNLVEWVKIKSQKDDLESIIDSHLLVREKFP-QSFRTVTELALKCAAFERSERPTI
D8R2R4______________SDMSEPLRNWEVPQGIEMFSLDQISKATSGFSKECEVGCGGFGRVYRGNLEDGRTVAIKQASAKSKQGQREFRNEIQLLSRLHHRHLVRLLGFCQSGKNQVLVYEFMENGNLHDRLLGKYSGQLLDCYQRLAIAVAVAQGLDYLHSYA--VIIHRDLKPSNILLDGNLTAKISDFGISKVSPEF-DTHVSTKPAGTAGYLDPEYFLRRQLTTASDVYSFGVVLLELITGQKAIDQKRPEEFNLIEWVKPRLRNGGIRSVIDSR--IAENFPEEQYLALATIALRCAAFDKSERPSI

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
792	40		60		1.0
915		80		20	0.995493
983			20	80	0.995493
985	80	20			0.995493
1032	20		80		0.995493
1041			40	60	1.0
1043	20	80			0.995493
1194		20		80	0.995493
1199		80		20	0.995493
1484			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain