SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1638

Length: 2601 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene1638
AATGTCTTGCATTGGAAGAGAAATCCTGAAAGAAATAGTTACAGTTTGACTTCTGCAAGACGTGCGATCAGCATTAGTAACAAAGTGGAAACTGATGTACTAGCCTCTATTGTAGAAGGCAGGGATGAACATGAAAAATATATGCAGTCATGGAAGGAAGAACTTAAAAGAATTGATGGTTTTGAAAGGTTAAATAGAAAAGAGTGTGATGAGGATTTTGTTCAGAGGCTTATAGATAGGAGATGTGTCGATAACATAAGGATGTTGGTGGTTGATGCAATACAGAATGCTAAAGCAGGGCACCCTGGTTTGCCTCTGGGGATGGCAGAGGTTGGGTATGTGTTGTATAGGCATGTCATGAGATACAACCCCAACAATGCAAAATGGTTCAACAGAGATCGTTTTGTTCTCAGTGCAGGACATGGGTGCCTTCTTCAGTACGTATGCTTGCATCTTGCAGGGTTTCAATCTGTTGAGGTCGAAGACCTAAAACAATTATGCAAGTTAGGAGGTCGCACACCTGGTCATCCAGAGAATGAAATTACTGCAGGCATTGAGGTTACTACAGGTCCCCTGGGACAAGGAGTCGCGAATGCAGTGGGTTTTGCTCTTGCAGAGAGACATTTAGCAGCACGGTTCAACAAACCTGATGCAGTGATTGTTGATCACCGGACGTTTTGCATTATGGGAGATGGTTGTGCAATGGAGGGAATATCAAATGAGGCAGCTTCTCTTGCGGCACATTGGAAGCTCAACAAGCTCACACTGATCTATGATGACAACCACAATACGATTGATGGAGATACTAGTCTTGCATTTTCTGAAGACATTTCTGGCCGCTTCAGGGCTCTTGGTTGGAATACAGTTACAGTGGATAACATACATGAAAGCATGGAGTCCTTTCATAAAGCACTTGTTTCTGCTTTCAATGAAACTGAGAGGCCTACATTTATTAAGGTAAAGACCCTGATTGGTAAGTTGTCCAAGAAGGAAGGAACAGCCAAAGCTCATCATGGAATATTTGATGATCAAGATGTGAAGCAGATGAGGCAAAAAGTGAAATGGGAAGACAGAGAACCATTCCATGTTATTCCAATGGCCTACCAAGAACTGCAGAAGCGAGCAAAATATGGAGAAAGACTGGAAGAAGAATGGAACACAATGCTTGAAATATATAAACAGAAATATCCTCTTGAGGCGAAAGAATTCATGACTTTTCTTCAGGGTGGACTTCCTTCTGATTGGGAATCTGCTCTGCCAAGATTCTCGAAACCAGATCCAGTAGATGCAACACGTGGGTATTCTGAAAAGTGCTTGAATCGAATTGCAAAAGTCATACCTGGTATAATAGGAGGAAGTGCTGACCTTGCAAGCTCAAACAAAGTCTACCTAAAAGAATTCGAGGATTTCAAGCAGCCAGAAAGCCCTTGGGGCCGAAACATCCATTATGGTGTGCGAGAGCATGCCATGGCTGGGATCTCTAACGGAATTGCCTTGCATGGTAGTGGGTTAATCCCATTTGCAGCGACTTTCCTTGTGTTTTCAGACTACATGAAGAATTCAATGAGGCTATCTGCTCTCAGCCATGCTGGAGTGGTGTACATACTAACTCATGACTCAATAGGTCTAGGGGAAGATGGCCCAACACACCAGCCAGTCGAGCATCTTGCAGGTCTGCGAGCTGTGCCGAATTTGCTGGTATTGAGACCCGGTGATGGCAATGAAACAGCAGGTGCATACAAAGTAGCAATTGGACACAGAAAAGGGCCATCTGTGATTGCACTGTCTAGGCAAAAGTTGGCTGCAAACCTGGCAGGGACAACAATTGAGGGTGTTGAGAAAGGTGGGTATGTGATAAGTGATAATTCTGACAAAGATGAACCAGAACTCATCTTGATTGGAACTGGATCAGAGCTATGCCTCTGCGAAGCTGCTGCCAAGAATCTCAGAAAAGAAGGAAGGAAGGTAAGAGTGGTCTCTTTAGTTTGCTGGGAATTGTTTGACGAACAACCGCAAGCATATAGAGATGCAATTCTTCCTCCAAGTGTTGAGAAGAGACTTAGTGTTGAAGCTGGTTCTCCTCTGGGATGGAGAGAATATGTGGGCTCCAAGGGGCTAATACAGGCTGTAAGAAAATTTGGAGCTAGTGGAGCTTACCTGGATGTCTTCGAGAAAATGGGATTTACAGAAGAAAACGTAACAGAACTGGCTAAATCTCTTCTCAAGTAGATAGCTGTATTCTAAGTTTCCATGTTCATCCCACGCAAAACAGGTTTGGTTTAGAATCAGCAACACCATAGTTTACTACATGAGAATAAATGCTGGTTTTATCATGTATATGTACAGAATTATCACTACTACAAAGTTTTCTACCTATTGCATTTTATCATGTTATAAATGTTGTCACTCTATAATTATTTCTCTTTTTGGAAATGTTTTAGAAGCCCAGCTATTTTTCCCAATGAAATGTCCTCGCTCGATTATTATTTATAGTTTTGAAATGTTTTAGAAGCCGAAGTAAAAAGTAACGGTAATATTTTTCAATTGAATTTCGTAATTCAACATATCAAGTAATATTGATAAAGTGAGTTATTTCGACAT

Ace file of the UniGene sp_v2.0_unigene1638

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transketolase, putative n=1 Tax=Ricinus communis RepID=B9T0B2_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	transketolase	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transketolase.	EC:2.2.1.1	-	0.0	74%

Source	KEGGs	Term	Type	Identity
Blast2go	Pentose phosphate pathway	00030		74%
Blast2go	Carbon fixation in photosynthetic organisms	00710		74%
Blast2go	Biosynthesis of phenylpropanoids	01061		74%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063		74%
Blast2go	Biosynthesis of plant hormones	01070		74%
Blast2go	Metabolic pathways	01100		74%
Blast2go	Biosynthesis of secondary metabolites	01110		74%
Blast2go	Formaldehyde transketolase.	EC:2.2.1.3	-	74%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Methane metabolism	00680		0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	74%
Blast2go	metabolic process	GO:0008152	Biological Process	74%
Blast2go	response to salt stress	GO:0009651	Biological Process	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%
Blast2go	transketolase activity	GO:0004802	Molecular Function	74%
Blast2go	formaldehyde transketolase activity	GO:0047896	Molecular Function	74%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	74%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase, bacterial-like	IPR005478	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ72

Fln msg: atg_distance in limit (1-15): atg_distance = 12, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 696 - 751

Fln protein: MQSWKEELKRIDGFERLNRKECDEDFVQRLIDRRCVDNIRMLVVDAIQNAKAGHPGLPLGMAEVGYVLYRHVMRYNPNNAKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVEVEDLKQLCKLGGRTPGHPENEITAGIEVTTGPLGQGVANAVGFALAERHLAARFNKPDAVIVDHRTFCIMGDGCAMEGISNEAASLAAHWKLNKLTLIYDDNHNTIDGDTSLAFSEDISGRFRALGWNTVTVDNIHESMESFHKALVSAFNETERPTFIKVKTLIGKLSKKEGTAKAHHGIFDDQDVKQMRQKVKWEDREPFHVIPMAYQELQKRAKYGERLEEEWNTMLEIYKQKYPLEAKEFMTFLQGGLPSDWESALPRFSKPDPVDATRGYSEKCLNRIAKVIPGIIGGSADLASSNKVYLKEFEDFKQPESPWGRNIHYGVREHAMAGISNGIALHGSGLIPFAATFLVFSDYMKNSMRLSALSHAGVVYILTHDSIGLGEDGPTHQPVEHLAGLRAVPNLLVLRPGDGNETAGAYKVAIGHRKGPSVIALSRQKLAANLAGTTIEGVEKGGYVISDNSDKDEPELILIGTGSELCLCEAAAKNLRKEGRKVRVVSLVCWELFDEQPQAYRDAILPPSVEKRLSVEAGSPLGWREYVGSKGLIQAVRKFGASGAYLDVFEKMGFTEENVTELAKSLLK*

Protein Length: 697

Fln nts: AATGTCTTGCATTGGAAGAGAAATCCTGAAAGAAATAGTTACAGTTTGACTTCTGCAAGACGTGCGATCAGCATTAGTAACAAAGTGGAAACTGATGTACTAGCCTCTATTGTAGAAGGCAGGGATGAACATGAAAAATATATGCAGTCATGGAAGGAAGAACTTAAAAGAATTGATGGTTTTGAAAGGTTAAATAGAAAAGAGTGTGATGAGGATTTTGTTCAGAGGCTTATAGATAGGAGATGTGTCGATAACATAAGGATGTTGGTGGTTGATGCAATACAGAATGCTAAAGCAGGGCACCCTGGTTTGCCTCTGGGGATGGCAGAGGTTGGGTATGTGTTGTATAGGCATGTCATGAGATACAACCCCAACAATGCAAAATGGTTCAACAGAGATCGTTTTGTTCTCAGTGCAGGACATGGGTGCCTTCTTCAGTACGTATGCTTGCATCTTGCAGGGTTTCAATCTGTTGAGGTCGAAGACCTAAAACAATTATGCAAGTTAGGAGGTCGCACACCTGGTCATCCAGAGAATGAAATTACTGCAGGCATTGAGGTTACTACAGGTCCCCTGGGACAAGGAGTCGCGAATGCAGTGGGTTTTGCTCTTGCAGAGAGACATTTAGCAGCACGGTTCAACAAACCTGATGCAGTGATTGTTGATCACCGGACGTTTTGCATTATGGGAGATGGTTGTGCAATGGAGGGAATATCAAATGAGGCAGCTTCTCTTGCGGCACATTGGAAGCTCAACAAGCTCACACTGATCTATGATGACAACCACAATACGATTGATGGAGATACTAGTCTTGCATTTTCTGAAGACATTTCTGGCCGCTTCAGGGCTCTTGGTTGGAATACAGTTACAGTGGATAACATACATGAAAGCATGGAGTCCTTTCATAAAGCACTTGTTTCTGCTTTCAATGAAACTGAGAGGCCTACATTTATTAAGGTAAAGACCCTGATTGGTAAGTTGTCCAAGAAGGAAGGAACAGCCAAAGCTCATCATGGAATATTTGATGATCAAGATGTGAAGCAGATGAGGCAAAAAGTGAAATGGGAAGACAGAGAACCATTCCATGTTATTCCAATGGCCTACCAAGAACTGCAGAAGCGAGCAAAATATGGAGAAAGACTGGAAGAAGAATGGAACACAATGCTTGAAATATATAAACAGAAATATCCTCTTGAGGCGAAAGAATTCATGACTTTTCTTCAGGGTGGACTTCCTTCTGATTGGGAATCTGCTCTGCCAAGATTCTCGAAACCAGATCCAGTAGATGCAACACGTGGGTATTCTGAAAAGTGCTTGAATCGAATTGCAAAAGTCATACCTGGTATAATAGGAGGAAGTGCTGACCTTGCAAGCTCAAACAAAGTCTACCTAAAAGAATTCGAGGATTTCAAGCAGCCAGAAAGCCCTTGGGGCCGAAACATCCATTATGGTGTGCGAGAGCATGCCATGGCTGGGATCTCTAACGGAATTGCCTTGCATGGTAGTGGGTTAATCCCATTTGCAGCGACTTTCCTTGTGTTTTCAGACTACATGAAGAATTCAATGAGGCTATCTGCTCTCAGCCATGCTGGAGTGGTGTACATACTAACTCATGACTCAATAGGTCTAGGGGAAGATGGCCCAACACACCAGCCAGTCGAGCATCTTGCAGGTCTGCGAGCTGTGCCGAATTTGCTGGTATTGAGACCCGGTGATGGCAATGAAACAGCAGGTGCATACAAAGTAGCAATTGGACACAGAAAAGGGCCATCTGTGATTGCACTGTCTAGGCAAAAGTTGGCTGCAAACCTGGCAGGGACAACAATTGAGGGTGTTGAGAAAGGTGGGTATGTGATAAGTGATAATTCTGACAAAGATGAACCAGAACTCATCTTGATTGGAACTGGATCAGAGCTATGCCTCTGCGAAGCTGCTGCCAAGAATCTCAGAAAAGAAGGAAGGAAGGTAAGAGTGGTCTCTTTAGTTTGCTGGGAATTGTTTGACGAACAACCGCAAGCATATAGAGATGCAATTCTTCCTCCAAGTGTTGAGAAGAGACTTAGTGTTGAAGCTGGTTCTCCTCTGGGATGGAGAGAATATGTGGGCTCCAAGGGGCTAATACAGGCTGTAAGAAAATTTGGAGCTAGTGGAGCTTACCTGGATGTCTTCGAGAAAATGGGATTTACAGAAGAAAACGTAACAGAACTGGCTAAATCTCTTCTCAAGTAG___ATAGCTGTATTCTAAGTTTCCATGTTCATCCCACGCAAAACAGGTTTGGTTTAGAATCAGCAACACCATAGTTTACTACATGAGAATAAATGCTGGTTTTATCATGTATATGTACAGAATTATCACTACTACAAAGTTTTCTACCTATTGCATTTTATCATGTTATAAATGTTGTCACTCTATAATTATTTCTCTTTTTGGAAATGTTTTAGAAGCCCAGCTATTTTTCCCAATGAAATGTCCTCGCTCGATTATTATTTATAGTTTTGAAATGTTTTAGAAGCCGAAGTAAAAAGTAACGGTAATATTTTTCAATTGAATTTCGTAATTCAACATATCAAGTAATATTGATAAAGTGAGTTATTTCGACAT

Fln Alignment:

Contig1638___RCVDNIRMLVVDAIQNAKAGHPGLPLGMAEVGYVLYRHVMRYNPNNAKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVEVEDLKQLCKLGGRTPGHPENEITAGIEVTTGPLGQGVANAVGFALAERHLAARFNKPDAVIVDHRTFCIMGDGCAMEGISNEAASLAAHWKLNKLTLIYDDNHNTIDGDTSLAFSEDISGRFRALGWNTVTVDNIHESMESFHKALVSAFNETERPTFIKVKTLIGKLSKKEGTAKAHHG-IFDDQDVKQMRQKVKWEDREPFHVIPMAYQELQKRAKYGERLEEEWNTMLEIYKQKYPLEAKEFMTFLQGGLPSDWESALPRFSKPDPVDATRGYSEKCLNRIAKVIPGIIGGSADLASSNKVYLKEFEDFKQPESPWGRNIHYGVREHAMAGISNGIALHGSGLIPFAATFLVFSDYMKNSMRLSALSHAGVVYILTHDSIGLGEDGPTHQPVEHLAGLRAVPNLLVLRPGDGNETAGAYKVAIGHRKGPSVIALSRQKLAANLAGTTIEGVEKGGYVISDNSDKDEPELILIGTGSELCLCEAAAKNLRKEGRKVRVVSLVCWELFDEQPQAYRDAILPPSVEKRLSVEAGSPLGWREYVGSKGLIQAVRKFGASGAYLDVFEKMGFTEENVTELAKSLL
C0PQ72______________KSINAIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLYLAGYDSVKEEDLKGFRQWGSKTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARYNKPDSTIVDHYTYCIVGDGCQMEGISNEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVTTRFEGLGWHTIWVKNGNTGYDEIRAAIEEAKSVKDRPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVDATRQNLGW-PHPPFHVPEEVKSHWSRHAARGASFEAEWSSKLAEHEKKYPEEAAEFKALISGKLPEGWDKALPAYTTESPADATRILSQQCLNALAKVLPGLLGGSADLASSNMTLLKMFGDF-QKDTPAERNVRFGVREHSMGAICNGIAHHGSGLIPYCATFFVFTDYMRAAIRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNVLMLRPADGNETAGAYKVAVLNRKRPSILALSRQKL-PHLAGSSIEGVEKGGYTISCNASNNKPDVILMGTGSELEIAEKAAVTLRNEGKAVRVVSFVCWELFEEQTPEYKESVLPAAVAARVSVEAGSTFGWERYLGSKGKAVGIDRFGASAPIGILYKEFGLTAENVVATAKQVL

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1619		66		33	1.0
1738		83		16	0.999991
1869	16			83	0.994512
1872			85	14	0.993533
1920			16	83	0.994512
1964			87	12	0.992554
1965	87			12	0.992554
1966	75	12	12		0.975346
1967		12	87		0.992554
1968		12	75	12	0.975346
1970	75		25		1.0
1971	75		12	12	0.975346
1972		25	75		1.0
1973	87			12	0.992554
1974		12	87		0.992554
1976	12		87		0.992554
1977		12	87		0.992554
1980	12			87	0.992554
2248		40		60	1.0
2280			83	16	0.994512
2360	50		50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1954	1966	GAAG GAAG GAAG G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain