SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1637

Length: 1237 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1637 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid permease family protein [Arabidopsis thaliana] dbj\|BAB02604.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL07122.1\| unknown protein [Arabidopsis thaliana] gb\|AEE75383.1\| Amino acid permease family protein [Arabidopsis thaliana]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	neutral amino acid transport protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transmembrane transport	GO:0003333	Biological Process	81%
Blast2go	cationic amino acid transmembrane transporter activity	GO:0015326	Molecular Function	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Adenosylhomocysteinase	IPR000043	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPK8

Fln msg: Overlapping hits, possible frame ERROR between 457 and 418, your sequence is shorter than subject: 316 - 502

Fln protein: SIPRLKPRQWLIFDLRKTDWRGYFNSLFWNLNYWDKASTLAGEVESPSKNFPKALMFAVILVVSSYLIPLLAGTGAIDLSTSGCGVGCFSEVAMLIGGAWLKWWIQAAAAMSNMGLFEAEMSGDAFQLLGMSEMGMLPxxxxxxxxxxxxxxxALSCSCL*VIVLSWMSFQEILEFLNFLYCIGMLLEFAAFVWLRIKHPDLQRPYKVPLNTFWVTVLCIPPSVLLIIVMCLAAFKTIIICSIVVVVGFLLYLCIGYMKARECLKFAKSEKEVIVPTSEGHEQTEEDAIGLLTDLSYEPKEKDIVIDFQRKVGKE*

Protein Length: 317

Fln nts: GTCCATTCCCCGTCTTAAGCCTCGACAATGGCTGATCTTTGACCTAAGGAAAACTGACTGGAGAGGATACTTCAACAGCCTCTTCTGGAATCTGAATTACTGGGATAAAGCCAGTACCTTGGCTGGGGAGGTGGAATCTCCAAGCAAGAACTTTCCAAAGGCTCTTATGTTTGCAGTTATTTTGGTGGTTTCTTCCTATCTAATTCCACTGCTCGCAGGCACAGGGGCTATAGACCTATCCACGAGTGGTTGTGGCGTTGGCTGTTTTTCAGAGGTGGCAATGTTGATAGGTGGTGCCTGGCTGAAATGGTGGATTCAGGCAGCAGCAGCAATGTCAAATATGGGTTTGTTTGAAGCAGAGATGAGTGGCGATGCATTTCAGCTACTTGGCATGAGTGAGATGGGCATGTTGCCGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCATTGTCGTGTTCTTGTCTTTGAGTCATCGTTTTATCCTGGATGAGCTTTCAAGAGATTTTGGAGTTTCTGAATTTTCTCTACTGTATTGGGATGCTTCTTGAGTTTGCAGCTTTTGTTTGGTTACGAATAAAGCATCCAGATCTCCAACGGCCTTACAAAGTCCCTTTAAATACATTTTGGGTCACTGTCCTCTGCATCCCACCCTCAGTATTGCTCATTATTGTCATGTGCTTGGCGGCCTTTAAAACTATAATTATATGCAGCATTGTTGTCGTAGTAGGCTTCTTACTGTACCTCTGCATAGGATACATGAAAGCAAGGGAGTGTTTGAAGTTTGCTAAGTCAGAAAAGGAAGTCATAGTACCAACTTCTGAAGGTCACGAACAGACTGAGGAAGATGCTATAGGACTATTGACTGACTTGTCTTATGAGCCTAAGGAAAAGGATATCGTTATCGATTTCCAGAGAAAAGTGGGGAAAGAATAATACCCATAGCAACAACTGTGGATGTTAAAGGTGATCTTTGACATTCCACTTTAAATGGGTACGCTGAGCTTTATGTCTATATGGAATCTGGATCACCAACTTTCAGCTGTACCTTTTGAGTATGAAGATTGCATGATGTAAATTCATATCAATCTATTACACATGTCTAAAGAACTGGTTCCTTAGGGTTTGTGATGAAGGTTTAATAATGCCTGCTTGATGTTTATGTTATTCTGATGCTATTTTCTTTGTTTCTTGAAAGTTATATATAGTCTTCTACCATTTCAAT

Fln Alignment:

Contig1637___SIPRLKPRQWLIFDLRKTDWRGYFNSLFWNLNYWDKASTLAGEVESPSKNFPKALMFAVILVVSSYLIPLLAGTGAIDLSTSGCGVGCFSEVAMLIGGAWLKWWIQAAAAMSNMGLFEAEMSGDAFQLLGMSEMGMLPxxxxxxxxxxxxxxALSCSCL*VIVLSWMSFQEILEFLNFLYCIGMLLEFAAFVWLRIKHPDLQRPYKVPLNTFWVTVLCIPPSVLLIIVMCLAAFKTIIICSIVVVVGFLLYLCIGYMKARECLKFAKSEKEVIVPTSEGHEQTEEDAIGLLTDLSYEPKEKDIVIDFQRKVGK
B8LPK8______________SIPHLRPRQWLIFDLRKTDWRGYFNSLFWNLNYWDKASTLAGEVESPSKTFPKALMLAVILVVCSYLIPLLAGTGAVDLSTSDWSDGYFAEVAMLIGGAWLKWWIQAAAAMSNMGLFEAEMSGDAFQLLGMSEMGMLPxxxxxxxxxxxxxxSIICSATGVIVLSWMSFQEILEFLNFLYCIGMLLEFAAFVWLRIKHPDLQRPYKVPLNTFWVTVLCIPPSVLLIIVMCLAAFKTLIVSSTVVIVGFLLYPCIGYMKARECLKFVKSDKEVIVPTSEGHEQTDEDAIGLLTDLSYKPKEKDILINFQGNVGK

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
565	88			11	0.923564
613			75	25	1.0
616		75	25		1.0
618		25		75	1.0
619	25			75	1.0
621		25		75	1.0
629	25			75	1.0
630		25		75	1.0
706	20			80	0.995493
709			80	20	0.995493
710	80			20	0.995493
752			75	25	0.996473
754		25	75		0.996473
757	75	25			0.996473
761	50	50			1.0
762		50	50		1.0
763	50	50			1.0
766	25		75		0.996473
767	25			75	0.996473
773		75		25	0.996473
774	25		75		0.996473
1117		75		25	0.996473
1118	75		25		0.996473
1121			75	25	0.996473
1122			20	80	0.995493
1125	20			80	0.995493
1127		20	80		0.995493
1129	20			80	0.995493
1130	20			80	0.995493
1131			20	80	0.995493
1132	80		20		0.995493
1137		80	20		0.995493
1169	75	25			0.996473
1170		25	75		0.996473
1171		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
907	918	TGC TGC TGC TGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain