SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1625

Length: 983 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1625 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative transcription factor [Oryza sativa Japonica Group] gb\|ABB47886.2\| expressed protein [Oryza sativa Japonica Group]	-	-	3.0e-36	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	protein	-	-	2.25609e-43	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	2.25609e-43	85%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	2.25609e-43	85%
Blast2go	plastid	GO:0009536	Cellular Component	2.25609e-43	85%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	Protein of unknown function DUF810	IPR008528	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
848		10	90		0.90298
849	90	10			0.90298
851	90			10	0.90298
853			88	11	0.923564
854	88		11		0.923564
856			11	88	0.923564
859	11		88		0.923564
862		88	11		0.923564
866	11			88	0.923564
867		88	11		0.923564
868	88		11		0.923564
869			88	11	0.923564
870	88	11			0.923564
872		12		87	0.992554
912		40	60		1.0
913	60	40			1.0
914		40	60		1.0
915		40	60		1.0
917	60			40	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
39	51	AGG AGG AGG AGG A	13
466	479	TTG TTG TTG TTG TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain