SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1619

Length: 1044 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1619

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=Carotenoid isomerase, chloroplastic; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	25%
Blast2go	pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2-like	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	copper ion binding	GO:0005507	Molecular Function	83%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thiamine biosynthesis Thi4 protein	IPR002922	-	0.0	-
Sma3	FAD dependent oxidoreductase	IPR006076	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q8S4R4

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 22 aas, your sequence is shorter than subject: 260 - 615

Fln protein: GGVLLEDGTKINASAVLSNATPWVTFMKLTPANLLPEGFVNDVKGLDYTSGTTKINIAVDRLPQFHSCKRSSNEVGPEHHGTIHLGTESMDEIDKAYREALNGHPSTTPLIEMTIPSVLDKTISPPGKHVINLFIQYTPYKLQEGDWQDPTIRDAFSQQCFNLIDEYAPGFSSSIVGYDMLAPPDLETVFGLTGGNIFHGAMGLDSLFLLRPIKGWSGYRTPLKGLYLCGAGSHPGGGVMGAAGRNAAQVVLRDKKEKL*

Protein Length: 261

Fln nts: TTGGTGGGGTGCTCTTGGAAGATGGAACCAAAATAAATGCCTCTGCAGTTCTCTCAAATGCAACACCATGGGTGACTTTTATGAAATTGACACCTGCAAATTTGCTGCCAGAAGGGTTTGTGAATGATGTTAAGGGCTTGGACTACACCTCAGGAACCACAAAAATAAATATAGCAGTAGATAGATTACCACAATTCCACTCATGCAAACGTAGCAGCAATGAAGTTGGACCGGAGCATCACGGTACTATACACCTTGGTACTGAGAGCATGGACGAAATTGATAAAGCATATAGGGAAGCACTCAATGGCCATCCTTCAACAACACCTTTGATTGAGATGACAATTCCTTCAGTTTTAGACAAAACCATCTCTCCTCCAGGGAAGCACGTTATTAATCTTTTCATTCAATATACACCATATAAACTCCAAGAGGGTGATTGGCAAGACCCAACTATCAGAGATGCATTTTCTCAACAATGTTTCAACTTAATTGATGAATATGCTCCTGGTTTTAGTTCATCAATTGTTGGTTACGATATGTTAGCACCTCCAGACCTTGAAACGGTGTTTGGACTTACAGGTGGTAACATCTTCCATGGTGCAATGGGGTTGGATTCTCTCTTTCTCCTACGACCAATTAAAGGGTGGTCAGGATACAGGACTCCTTTGAAAGGACTCTATCTTTGTGGAGCTGGTTCACATCCAGGAGGTGGTGTGATGGGTGCAGCTGGTCGAAATGCTGCTCAAGTTGTTCTTCGAGATAAAAAGGAAAAACTTTGA___AGAGTGAGTTTTGCCACAAAAGAATAGCTAATGGCAGTACCAATCTACCGAATTGTTTTTAACTAATGATCTTGAAGATTAATGTAAGTATATTTTGAGATATTGAGCTTATAATTCTAGCGTACTGAAATGGTTTTATAAGCATCTGCTTTATATTCTCTCTACAAGTATGCCATCCTCCTTTTGTGTTTGCAGTGACTCTGTTATCATCCGATTATGTATTTTTAAAGAAGCCTGTCTATTCTTAGAATAGACCTTTCTT

Fln Alignment:

Contig1619___GVLLEDGTKINASAVLSNATPWVTFMKLTPANLLPEGFVNDVKGLDYTSGTTKINIAV--DRLPQFHSCKRSSNEVGPEHHGTIHLGTESMDEIDKAYREALNGHPSTTPLIEMTIPSVLDKTISPPGKHVINLFIQYTPYKLQEGDWQDP----TIRDAFSQQCFNLIDE-YAPGFSSSIVGYDMLAPPDLETVFGLTGGNIFHGAMGLDSLFLLRPIKGWSGYRTPLKGLYLCGAGSHPGGGVMGAA
Q8S4R4______________GVKLSDGRKFYAKTIVSNATRWDTFGKLLKAENLPKEEENFQKAYVKAPSFLSIHMGVKADVLPPDTDC----------HHFVLE---DDWTNLEKPYGS-----------IFLSIPTVLDSSLAPEGHHILHIF---TTSSIEDWEGLSPKDYEAKKEVVAERIISRLEKTLFPGLKSSILFKEVGTPKTHRRYLARDSGTYGPMPRGTPKGLLGMPFN-----TTAIDGLYCVGDSCFPGQGVIAVA

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
574		33	66		0.997452
576	66			33	0.997452
579			33	66	0.997452
583		33	66		0.997452
584			66	33	0.997452
589	66		33		0.997452
590	66			33	0.997452
598	33	66			0.997452
864	88	11			0.923564
868	11			88	0.923564
871			88	11	0.923564
873	88		11		0.923564
876			11	88	0.923564
877	11			88	0.923564
878	11			88	0.923564
879			11	88	0.923564
887			11	88	0.923564
891	11	88			0.923564
892	11			88	0.923564
893	11			88	0.923564
896	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain