SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1544

Length: 2434 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene1544
CGTCGTGACCTGGTGGTCAGTCAGTGGCAGTTGGTTGTGATGATGGTGCTGTTCGCATTTATGTTGTTCATGAGGAAGGCATGGAATATTACAGGTCATTTCCAAGAGTCGAAGGGAAAATTTTGAGTGTTGTTTGGAGTTTGGATGCAAAGAAAATATTTGCAGGAGGTTCTGATGGTTGTATTAGGTGTTGGGATATGACAACATTCAATGAAGTATACAGGATAACAGCTGGTCTTGGAGGTTTGGGCAGTGGGCCAGACCTCTGTATCTGGTCTCTTCTTGTCCTACGAGATGGAACTCTTGTCAGTGGAGATAGTACTGGAAGTACTCAATTTTGGGATGCTCACCAAGGAACTTTATTACAAGCCCTGACATATCACAAGGGGGATGTTTTGGCATTGGCTGCAACACCGAGCCATCAGGGTGTATTTTCTGCTGGTTCTGATAGTCAGGTAATAAGCTATAAATTTGTTCCCGAGAGGATTGAATCTGTTAAAAATACTGTTGAAGACTTAGCTGATTGTGCTGGGAATCGTTGGGTCTTTGTTGGTAGCAACCGGGTGCATACGCATGATGTTAGGGCTTTGACTGTGGCAACACCTCTGATCTCTGAACAAGGTGAGCTTCTTGGTGCTCCAAGTCGGAAGAAACGCAGATATGGAAAGCCATTGGGAATGGATTATCAGAAATGGGCTCTCCCAGGAGTTCCAATGCTTATTTCAGGGGGTGACGACACAAAACTTTTTGCATATCCTGCCAATACATTCCTTGATTTTTATCCACATGATATTTGTCCAGCACCTCAACGATTATTTATGCAGCTGGCTTGTGAACCAAAAGTCGGGGGATGTCCTATAATGTTGACACAGTATGCAAGTTGGTTGGATGTGTCAATGATAAACGTAGGTATGCGTAATGATCTCAAGGCCAAAACTATGGATATCAAGCTTGGCAAGAGAAAGGGAAGATCTGAGTTTCCAGACAAAAGAGAAAAGCATCTTCTGACGGGTAACCCGTCAAAGCTATTGGCCAGAATAAAGTGCAAAGCGTCTCAGCGTATTATTTGTAGTGCAATATCTGAAACGGGAAATTTAATTGCATTTTCTGATCGTATTAAACCCAGGCTGTTTGAATTGAAAATGAAATTGTCAACAAAATGTGAAGGTGGCAAAGGTGGATGGAAAATTAAGAAGCGTCATCTACCACAGAGTTTGTTACCTGCTCATAGTATGGTTTTTAGTGCTGATTCTACACGGCTATTAATTGCATGTTATGATAGAAAGATACATGTTGTCGATGTTGAAAACAAGGAATTATTGCATACATTTGATCCATTTACCATGGATCGTCGGGGGCAGACAATGTCAAGGCCACCCATAACAAGGTTGTATGCTAGTGGTGATGGGCAATGGTTGGCTGCCATAAATTGTTGTGGAGACATTGATATATTCAACTTGGAGATTCTTAGGCAACATTGGCATATTTCCAGGTTGGATGGAGCAGGCGTGACGGCTGCTGGATTTCACCCTAGCAATAAAAATGTTCTTGTAGTTACAACATCTTCCAATCATGTATACGTGTTAGATGTAGATGCAAAACAACTAGGAGAGTGGTCAAAACGTTTTACATTTGGCCTTCCAAAGCGTTTCTTAGAATTTCCTGGTGGAATTATTGGTTTGTCATTTCCACCATCTCCAAAAGCCACTGCTGTAATTGTCCACAGTGCAAGTGCAATGTGCTTGATTGACTTTGGTAAACCTGTAAGGCATGATGAGAATGATTTAACAAATGGAGGATCTTTCGTGTTGGACAATTCCAACAATACCAAAAATGCGTTAGCCAACGGGAAAATGAAAAAGCCAAATCACAAGGCAACGTTAACAGACAATAATTTTGTAATTGTACCGTTTAGGGATCCTGTTCTCTTTCTGGCACACTTGTCTGAACAATCTATTCTTGTTGTCGAGAAGCCCTGGGTGGACGTTTTGCAGAATTTCCGAGCTCCAGTATATAGACATCTTTATGGAACATAAGAAACATGATTATGATATCCTTCAATGCAGATCGGGATCATTCATCTCAGAGCATTGCTTTTCCCCAGAAATCTCAGTATTGGGAAGGTTCTGTTGATTCCATTCTTATTTGGAATCATCAAGAGTTGTATTCCAACAGAGTTAATCTTATGTGGAAATTGCCAGGGGCGGTAAGCAAATGGTGGTTCGCTTATATTTGGGCATTGTGCTCTAGCAGTTCTGACGGTTCTTGTTTTTTCAATGCACACAACGTATAGAAATCACCACTGGTAATAATTTCCTTCTCAACGATTTTTGTCCTCTGATCACTTCCTAAGATAATAGCAAATTATTTTCAGGGTTCTTAGATTCTAGATGATTATTTAGATTTACACAATTGCTTTTTGTCCCCATCGAGA

Ace file of the UniGene sp_v2.0_unigene1544

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AEE82568.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	transducin wd40 domain-containing protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	lyase activity	GO:0016829	Molecular Function	0.0	63%
Blast2go	binding	GO:0005488	Molecular Function	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	EGF-like, alliinase	IPR006947	-	-
Sma3	Allinase, C-terminal	IPR006948	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC50

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is longer than subject: 678 - 221

Fln protein: S*PGGQSVAVGCDDGAVRIYVVHEEGMEYYRSFPRVEGKILSVVWSLDAKKIFAGGSDGCIRCWDMTTFNEVYRITAGLGGLGSGPDLCIWSLLVLRDGTLVSGDSTGSTQFWDAHQGTLLQALTYHKGDVLALAATPSHQGVFSAGSDSQVISYKFVPERIESVKNTVEDLADCAGNRWVFVGSNRVHTHDVRALTVATPLISEQGELLGAPSRKKRRYGKPLGMDYQKWALPGVPMLISGGDDTKLFAYPANTFLDFYPHDICPAPQRLFMQLACEPKVGGCPIMLTQYASWLDVSMINVGMRNDLKAKTMDIKLGKRKGRSEFPDKREKHLLTGNPSKLLARIKCKASQRIICSAISETGNLIAFSDRIKPRLFELKMKLSTKCEGGKGGWKIKKRHLPQSLLPAHSMVFSADSTRLLIACYDRKIHVVDVENKELLHTFDPFTMDRRGQTMSRPPITRLYASGDGQWLAAINCCGDIDIFNLEILRQHWHISRLDGAGVTAAGFHPSNKNVLVVTTSSNHVYVLDVDAKQLGEWSKRFTFGLPKRFLEFPGGIIGLSFPPSPKATAVIVHSASAMCLIDFGKPVRHDENDLTNGGSFVLDNSNNTKNALANGKMKKPNHKATLTDNNFVIVPFRDPVLFLAHLSEQSILVVEKPWVDVLQNFRAPVYRHLYGT*

Protein Length: 679

Fln nts: CGTCGTGACCTGGTGGTCAGTCAGTGGCAGTTGGTTGTGATGATGGTGCTGTTCGCATTTATGTTGTTCATGAGGAAGGCATGGAATATTACAGGTCATTTCCAAGAGTCGAAGGGAAAATTTTGAGTGTTGTTTGGAGTTTGGATGCAAAGAAAATATTTGCAGGAGGTTCTGATGGTTGTATTAGGTGTTGGGATATGACAACATTCAATGAAGTATACAGGATAACAGCTGGTCTTGGAGGTTTGGGCAGTGGGCCAGACCTCTGTATCTGGTCTCTTCTTGTCCTACGAGATGGAACTCTTGTCAGTGGAGATAGTACTGGAAGTACTCAATTTTGGGATGCTCACCAAGGAACTTTATTACAAGCCCTGACATATCACAAGGGGGATGTTTTGGCATTGGCTGCAACACCGAGCCATCAGGGTGTATTTTCTGCTGGTTCTGATAGTCAGGTAATAAGCTATAAATTTGTTCCCGAGAGGATTGAATCTGTTAAAAATACTGTTGAAGACTTAGCTGATTGTGCTGGGAATCGTTGGGTCTTTGTTGGTAGCAACCGGGTGCATACGCATGATGTTAGGGCTTTGACTGTGGCAACACCTCTGATCTCTGAACAAGGTGAGCTTCTTGGTGCTCCAAGTCGGAAGAAACGCAGATATGGAAAGCCATTGGGAATGGATTATCAGAAATGGGCTCTCCCAGGAGTTCCAATGCTTATTTCAGGGGGTGACGACACAAAACTTTTTGCATATCCTGCCAATACATTCCTTGATTTTTATCCACATGATATTTGTCCAGCACCTCAACGATTATTTATGCAGCTGGCTTGTGAACCAAAAGTCGGGGGATGTCCTATAATGTTGACACAGTATGCAAGTTGGTTGGATGTGTCAATGATAAACGTAGGTATGCGTAATGATCTCAAGGCCAAAACTATGGATATCAAGCTTGGCAAGAGAAAGGGAAGATCTGAGTTTCCAGACAAAAGAGAAAAGCATCTTCTGACGGGTAACCCGTCAAAGCTATTGGCCAGAATAAAGTGCAAAGCGTCTCAGCGTATTATTTGTAGTGCAATATCTGAAACGGGAAATTTAATTGCATTTTCTGATCGTATTAAACCCAGGCTGTTTGAATTGAAAATGAAATTGTCAACAAAATGTGAAGGTGGCAAAGGTGGATGGAAAATTAAGAAGCGTCATCTACCACAGAGTTTGTTACCTGCTCATAGTATGGTTTTTAGTGCTGATTCTACACGGCTATTAATTGCATGTTATGATAGAAAGATACATGTTGTCGATGTTGAAAACAAGGAATTATTGCATACATTTGATCCATTTACCATGGATCGTCGGGGGCAGACAATGTCAAGGCCACCCATAACAAGGTTGTATGCTAGTGGTGATGGGCAATGGTTGGCTGCCATAAATTGTTGTGGAGACATTGATATATTCAACTTGGAGATTCTTAGGCAACATTGGCATATTTCCAGGTTGGATGGAGCAGGCGTGACGGCTGCTGGATTTCACCCTAGCAATAAAAATGTTCTTGTAGTTACAACATCTTCCAATCATGTATACGTGTTAGATGTAGATGCAAAACAACTAGGAGAGTGGTCAAAACGTTTTACATTTGGCCTTCCAAAGCGTTTCTTAGAATTTCCTGGTGGAATTATTGGTTTGTCATTTCCACCATCTCCAAAAGCCACTGCTGTAATTGTCCACAGTGCAAGTGCAATGTGCTTGATTGACTTTGGTAAACCTGTAAGGCATGATGAGAATGATTTAACAAATGGAGGATCTTTCGTGTTGGACAATTCCAACAATACCAAAAATGCGTTAGCCAACGGGAAAATGAAAAAGCCAAATCACAAGGCAACGTTAACAGACAATAATTTTGTAATTGTACCGTTTAGGGATCCTGTTCTCTTTCTGGCACACTTGTCTGAACAATCTATTCTTGTTGTCGAGAAGCCCTGGGTGGACGTTTTGCAGAATTTCCGAGCTCCAGTATATAGACATCTTTATGGAACATAA___GAAACATGATTATGATATCCTTCAATGCAGATCGGGATCATTCATCTCAGAGCATTGCTTTTCCCCAGAAATCTCAGTATTGGGAAGGTTCTGTTGATTCCATTCTTATTTGGAATCATCAAGAGTTGTATTCCAACAGAGTTAATCTTATGTGGAAATTGCCAGGGGCGGTAAGCAAATGGTGGTTCGCTTATATTTGGGCATTGTGCTCTAGCAGTTCTGACGGTTCTTGTTTTTTCAATGCACACAACGTATAGAAATCACCACTGGTAATAATTTCCTTCTCAACGATTTTTGTCCTCTGATCACTTCCTAAGATAATAGCAAATTATTTTCAGGGTTCTTAGATTCTAGATGATTATTTAGATTTACACAATTGCTTTTTGTCCCCATCGAGA

Fln Alignment:

Contig1544___QSVAVGCDDGAVRIYVVH--EEGMEYYRSFPRVEGKILSVVWSLDAKKIFAGGSDG
D5AC50______________QRVAIGCDDGAIRIYVVRDSEEGMEYYRSFPRVKGKILSVVWSLDAKKIFAGGSDG

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1387	80	20			0.995493
1390	80			20	0.995493
1462		16		83	0.994512
1468	83			16	0.994512
1533		83	16		0.994512
1615		16	83		0.994512
1617			83	16	0.994512
1652	20		80		0.995493
1716		14		85	0.993533
1720	85	14			0.993533
1721			14	85	0.993533
1724	14			85	0.993533
1727	85			14	0.993533
1728		85		14	0.993533
1729	85		14		0.993533
1733		85		14	0.993533
1734	85	14			0.993533
1736		14	85		0.993533
2109	75	25			0.996473
2136		25	75		0.996473
2321		66		33	1.0
2364		25	62		1.0
2365	12	75			0.975346
2367	62			12	1.0
2368	87			12	0.992554
2437			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain