SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1528

Length: 2901 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1528
ATGGGGAACGTCGTGACCTTATTATGGGGATTTGTGTTTGGAACAGAAAGTTGGGGAAGCGGAGACATGGGGTGCGTGTACATACCTGTACAAAATTCGGAGGAAGAGGTCAGGGTGGCACTCGATCAACTCCCCAGAGATGCTACCGATATTCTCGACATCCTCAAAGCAGAGCAAGCGCCTCTTAATATATGGCTAATTATAGCGAGGGAATATTTTAAGCAAGGGAAAATAGATGAGTTCCTACAAATTCTCGAGGAAGGATCTAGTCGAGAAATTGATGAATACTATTCTGATGTAAGGTATGATAGAATTGCTATTTTAAATGCGCTTGGTGCATATTACAGCAACATTGGTAAAATTGAGACAAAGCAGAGAGAAAAGGAAGAGTTTTTCATCCGTGCAACCCATTATTATAATAAGGCTTCCAGAATTGATAAACATGAACCTTCTACTTGGGTTGGAAAAGGTCAGCTGCTTCTAGCAAAAGGTGATCTTGAACAAGCATATGGTGCATTCAAAATTGTACTAGATGGACAGGCTGATAATATTCCTGCTCTTCTTGGACAGGCATGTGTACAATTCAACCGTGGACGATATACCGAGTCATTGGAGCTGTATAAGAAAGCTTTGCAAGTTTATCCTGCGTGCCCCGCAGCAGTGAGACTTGGTTTAGGTCTGTGTCGGTACAAACTGGGTCAGTTCAGGAAAGCCAGACAAGCTTTTGAGCGTGTTTTACAGTTAGACCCTGAAAATGTTGAAGCTTTGGTGGCACTTGGAATAATGGATTTGCAAATGAATGAATCGGAAGGCATTCACGAAGGAATGGAAAAAATGCGGAGGGCCTTTGAGTTATATCCATACTGTGCAATGGCTTTAAATCATTTAGCCAACCATTTTTTCTTCACGGGGCAACATTTTCTTGTAGAGCAGTTAACTGAGACTGCTCTTGCTTCAACGGATCATGCTTTGATGAAATCTCATTCTTATTATAATCTTGCACGGTCTTATCATAGCAAGGGTGATTATGAGACTGCAGGTCGCTACTACATGGCATCAGTTAAGGAAAGCCAGAGGCCTCAGGATTTTGTGTTGCCTTACTATGGGCTGGGGCAGGTTCAAATGAAGTTGGGAGATCTTAAGAGTTCTCTATCAAATTTTGAAAAAGTTTTGGAGGTACACCCTGAGAATTGCGAGAGCTTGAAGGCTGTAGGATATATATATGTTCAACAAGGACAGGCTGAGAAGGCTTTGGAAATGTTTAAAAAGGCAACTCGCATAGATCCCCGTGATGCGCATGCATTTATTGAGATGGGAGAGTTATTATTTTATCAGACACCAGTGCAGCATTAGATGCTTTCAAGACGGCAAATTCTCTCCTAAAGAAAAGCAGAGAAGAAGTACCCATTGAATTACTTAATAACATTGGAGTTCTTCATTTTGAGCGTGGTGAATTTGAGTTGGCTCAAAAAAACTTTCACAGATGCATTGGGAGATGGTGTTTGGCTTGACTTCATCAATGGAAGAATACATTGCCCCAATGTTGATTCTGCAGCTTTTCCTGCACAGTTCAAAGATACTGATTTCTTCCATCAACTGGAAGAAGATGGAATTTCACTTGAGTTACCTTGGGAGAAAGTTACTACACTTTTCAATCAGGCTAGACTGTTTGAAGAACTCCACGAGTCAGAAAAAGCAAGTATTTTATACAGGCTGATCTTATTCAAGTTTCCTGATTATGTTGATGGGTACCTACGACTGGCAGCCATGGCTTGGGCTCGAAATAATGTTCAGCTAAGTTTAGAACTGACTGGGGATGCGCTCAAGGTGGATGAAAAATCATCCAATGCTTTATCTATGCTTGGCAACATGGAGCTAAAAGCAGATGCTTGGCTCAAAGCAAAGGAAACATTTAGAATTGCGCAGGATGTGACAGGGGGCAAAGATTCTTATGCCAATCTTTCACTTGGGAATTGGAATTATTTTGCAGCAGTTCGTAATGAGAAGAAGGATTCAAAGCTGGAGGCCACACATCTTGAAAAAGCTAGAGAACTTTATTGTAAAGTATTGGCACAAAGGCCAGGCAATGTGTATGCTGCGAATGGTGCAGCTGTTGTGCTGGCTGAAAAGGGTCTATTTGATGTTTCAAAGGACATTTTTACACAGGTGCAAGAAGCTGCAGCAGGAAACATCTTTGTTCAGATGCCAGATGTGTGGGTAAATCTGGCACATGTTTACTTTGCTCAAGGCCAGTTTGCACTGGCTGTGAAAATGTACCAAAACTGTTTGAGGAAATTCTATTATGGTACCGATACCCAAGTTTTATTATATTTGGCTCGAACACATTATGAGGCAGAACAGTGGCAAGATTGCAAAAGAACTTTACTAAGAGCAATACATCTGGCCCCCTCGAACTACATGTTACGGTTTGATGCTGGTATTGCAATGCAAAAATTCTCAACTTCAACACTTCAAAAGCAAAAACGAACTGCTGATGAGGTTCGCCAGGCAGTATCAGAATTAAAAAATGCACTTCGTGTATTCAGCCAGCTGTCTGCAGTGACCAATCATCACTCACATGGATTTGATGAGAAGAAAATAGAAATGCATGTTGACTACTGTAAGCATTTACTTGATGCTGCCAAAGTTCATAGAGAGGCAGCAGAACGTGAAGAGCAACAGAACCGTCAAAAACTTGAAGTTGCACGTCAACTTATCTTGGCTGAGGAAGCCCGTCGTAAAGCTGAAGAAGAACGTAAACTGCAGATGGAAAGGAGACAGCATGAAGAAATGCTACGACGGGTTAGGCAACAAGAAGAACACTTTGAACGTGTGAAGGAATTGTGGAAGGGTAAGAATAAAGACAAGGGTGATGATGATGATGAGTCTGGGCAAGCTGAG

Ace file of the UniGene sp_v2.0_unigene1528 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative TPR-containing nuclear phosphoprotein [Oryza sativa Japonica Group]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	rna polymerase-associated protein ctr9 homolog	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	78%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	78%
Blast2go	histone methylation	GO:0016571	Biological Process	78%
Blast2go	binding	GO:0005488	Molecular Function	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NM70

Fln msg:

Fln protein: MLTTVSIYLMLPKFIERQQNVKSNRTVKNLKLHVNLSWLRKPVVKLKKNVNCRWKGDSMKKCYDGLGNKKNTLNV*

Protein Length: 77

Fln nts: ATGGGGAACGTCGTGACCTTATTATGGGGATTTGTGTTTGGAACAGAAAGTTGGGGAAGCGGAGACATGGGGTGCGTGTACATACCTGTACAAAATTCGGAGGAAGAGGTCAGGGTGGCACTCGATCAACTCCCCAGAGATGCTACCGATATTCTCGACATCCTCAAAGCAGAGCAAGCGCCTCTTAATATATGGCTAATTATAGCGAGGGAATATTTTAAGCAAGGGAAAATAGATGAGTTCCTACAAATTCTCGAGGAAGGATCTAGTCGAGAAATTGATGAATACTATTCTGATGTAAGGTATGATAGAATTGCTATTTTAAATGCGCTTGGTGCATATTACAGCAACATTGGTAAAATTGAGACAAAGCAGAGAGAAAAGGAAGAGTTTTTCATCCGTGCAACCCATTATTATAATAAGGCTTCCAGAATTGATAAACATGAACCTTCTACTTGGGTTGGAAAAGGTCAGCTGCTTCTAGCAAAAGGTGATCTTGAACAAGCATATGGTGCATTCAAAATTGTACTAGATGGACAGGCTGATAATATTCCTGCTCTTCTTGGACAGGCATGTGTACAATTCAACCGTGGACGATATACCGAGTCATTGGAGCTGTATAAGAAAGCTTTGCAAGTTTATCCTGCGTGCCCCGCAGCAGTGAGACTTGGTTTAGGTCTGTGTCGGTACAAACTGGGTCAGTTCAGGAAAGCCAGACAAGCTTTTGAGCGTGTTTTACAGTTAGACCCTGAAAATGTTGAAGCTTTGGTGGCACTTGGAATAATGGATTTGCAAATGAATGAATCGGAAGGCATTCACGAAGGAATGGAAAAAATGCGGAGGGCCTTTGAGTTATATCCATACTGTGCAATGGCTTTAAATCATTTAGCCAACCATTTTTTCTTCACGGGGCAACATTTTCTTGTAGAGCAGTTAACTGAGACTGCTCTTGCTTCAACGGATCATGCTTTGATGAAATCTCATTCTTATTATAATCTTGCACGGTCTTATCATAGCAAGGGTGATTATGAGACTGCAGGTCGCTACTACATGGCATCAGTTAAGGAAAGCCAGAGGCCTCAGGATTTTGTGTTGCCTTACTATGGGCTGGGGCAGGTTCAAATGAAGTTGGGAGATCTTAAGAGTTCTCTATCAAATTTTGAAAAAGTTTTGGAGGTACACCCTGAGAATTGCGAGAGCTTGAAGGCTGTAGGATATATATATGTTCAACAAGGACAGGCTGAGAAGGCTTTGGAAATGTTTAAAAAGGCAACTCGCATAGATCCCCGTGATGCGCATGCATTTATTGAGATGGGAGAGTTATTATTTTATCAGACACCAGTGCAGCATTAGATGCTTTCAAGACGGCAAATTCTCTCCTAAAGAAAAGCAGAGAAGAAGTACCCATTGAATTACTTAATAACATTGGAGTTCTTCATTTTGAGCGTGGTGAATTTGAGTTGGCTCAAAAAAACTTTCACAGATGCATTGGGAGATGGTGTTTGGCTTGACTTCATCAATGGAAGAATACATTGCCCCAATGTTGATTCTGCAGCTTTTCCTGCACAGTTCAAAGATACTGATTTCTTCCATCAACTGGAAGAAGATGGAATTTCACTTGAGTTACCTTGGGAGAAAGTTACTACACTTTTCAATCAGGCTAGACTGTTTGAAGAACTCCACGAGTCAGAAAAAGCAAGTATTTTATACAGGCTGATCTTATTCAAGTTTCCTGATTATGTTGATGGGTACCTACGACTGGCAGCCATGGCTTGGGCTCGAAATAATGTTCAGCTAAGTTTAGAACTGACTGGGGATGCGCTCAAGGTGGATGAAAAATCATCCAATGCTTTATCTATGCTTGGCAACATGGAGCTAAAAGCAGATGCTTGGCTCAAAGCAAAGGAAACATTTAGAATTGCGCAGGATGTGACAGGGGGCAAAGATTCTTATGCCAATCTTTCACTTGGGAATTGGAATTATTTTGCAGCAGTTCGTAATGAGAAGAAGGATTCAAAGCTGGAGGCCACACATCTTGAAAAAGCTAGAGAACTTTATTGTAAAGTATTGGCACAAAGGCCAGGCAATGTGTATGCTGCGAATGGTGCAGCTGTTGTGCTGGCTGAAAAGGGTCTATTTGATGTTTCAAAGGACATTTTTACACAGGTGCAAGAAGCTGCAGCAGGAAACATCTTTGTTCAGATGCCAGATGTGTGGGTAAATCTGGCACATGTTTACTTTGCTCAAGGCCAGTTTGCACTGGCTGTGAAAATGTACCAAAACTGTTTGAGGAAATTCTATTATGGTACCGATACCCAAGTTTTATTATATTTGGCTCGAACACATTATGAGGCAGAACAGTGGCAAGATTGCAAAAGAACTTTACTAAGAGCAATACATCTGGCCCCCTCGAACTACATGTTACGGTTTGATGCTGGTATTGCAATGCAAAAATTCTCAACTTCAACACTTCAAAAGCAAAAACGAACTGCTGATGAGGTTCGCCAGGCAGTATCAGAATTAAAAAATGCACTTCGTGTATTCAGCCAGCTGTCTGCAGTGACCAATCATCACTCACATGGATTTGATGAGAAGAAAATAGAAATGC_-_ATGTTGACTACTGTAAGCATTTACTTGATGCTGCCAAAGTTCATAGAGAGGCAGCAGAACGTGAAGAGCAACAGAACCGTCAAAAACTTGAAGTTGCACGTCAACTTATCTTGGCTGAGGAAGCCCGTCGTAAAGCTGAAGAAGAACGTAAACTGCAGATGGAAAGGAGACAGCATGAAGAAATGCTACGACGGGTTAGGCAACAAGAAGAACACTTTGAACGTGTGA___AGGAATTGTGGAAGGGTAAGAATAAAGACAAGGGTGATGATGATGATGAGTCTGGGCAAGCTGAG

Fln Alignment:

Contig1528___MLTTVSIYLMLPKFIERQQNVKSNRTVKNLKLHVNLSWLRKPVVKLKKNVNCRWKGDSMKKCYDGLGNKKNTLNV
A9NM70______________MLNTVSIYLMLPKFIERQRNVKSNRTVKNLKLHVNLSWLMKPAVKLKKNVNCRWKGDSRKKCYDGLGNKKNTSNV

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
1315	20		80		0.995493
1321	40	60			1.0
1356		83		16	0.994512
1357	83		16		0.994512
1359		83	16		0.994512
1360	83			16	0.994512
1361			16	83	0.994512
1362	16			83	0.994512
1363		16	83		0.994512
1364	16		83		0.994512
1366	16	16	66		0.988813
1370			16	83	0.994512
1374		16		83	0.994512
1375	16			83	0.994512
1377			16	83	0.994512
1378	20			20	0.99255
1380		16	16	66	0.988813
1511	20			80	0.995493
1514			80	20	0.995493
1891	16		83		0.994512
1892	16	83			0.994512
1894	83		16		0.994512
1901			83	16	0.994512
1902	83			16	0.994512
1930	20			80	0.995493
1996		75	25		0.996473
2019		83		16	0.994512
2060	85			14	0.993533
2061	85			14	0.993533
2149	42	57			1.0
2161	12		87		0.992554
2181		88	11		0.923564
2195	11		88		0.923564
2197	11			88	0.923564
2518	25	75			0.996473
2520	25	75			0.996473
2521			25	75	0.996473
2590	90		10		0.90298
2750	10			90	0.90298
2751		90	10		0.90298
2754		10	90		0.90298
2756	90		10		0.90298
2757		10		90	0.90298
2758	90	10			0.90298
2759	10			90	0.90298
2760	10	90			0.90298
2764	90	10			0.90298
2765	10		90		0.90298
2767	90		10		0.90298
2768	10			90	0.90298
2770			10	90	0.90298
2834		11	88		0.923564
2875	16	16			0.988813
2877	83	16			0.994512
2878	83	16			0.994512
2879	33			16	1.0
2881	20	40	40		1.0
2882	40	60			1.0
2883		60	20	20	0.99255
2884		60		20	0.99255
2886	60	20			0.99255
2887		40		60	1.0
2888	66	33			0.997452
2890	33	33		33	0.997753
2891		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
17	31	TCA TCA TCA TCA TCA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain