SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1526

Length: 2363 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1526
CGTCGTGACCTTGGCTGTCAGTCAATTTTTTGTTTCTCGCGTCTCAGTGTTAGCCGGCGTGGAATTTAGTCTCGGGGCTGTAGATGGTCAAAGCATCCATGCGTGTTTGAAGTTGGAAGCCTCCAGGGACGACTCTACGGTTGTTTGCGAGACTCTTGCTCTCGGAAGGTTCGATCACAAGGGGTACAGGGTGAGTGGTATTAGGAGTCTCTATTAGCCGGGATATCTTGATAAAGCATGGTTGCTTTTAGAGTCTCTCTGAAAATAAAGCCGATTCTGAAAAGCTAGGAAGGGATTCGAAGTTGGAACGCTTGAAGTTGGTTATTTGATCCAGAGTTTTTTTTTCTGTGTGGATCAGAGAAGAGAAGCGCTGTACGGTGATTCGAAATCTGCATCTTTGGAAGCTTAAAGAATTTCAGTTAGAGATGTACATATGCAAGTTGTTAGAGACTTAAATGCCCCCGGCTATTTACGAAGGGTTATGCCGATGCGAAACGGTGCGCAATAAATATTCTGTTTTGTTTTGCGTGATAATAAAACACTGAAGCGCTATAATTGTGCCGGATTTAGGATTCAAGAGAGGAGCAAAAGCCTGAAGGCCAAGGCACATAAGGCAGGGTACAGGTATGGGATCAGGACGGGGCACTCTGGAGAGCTTTCGCAGAGGGATTCGAACGGCATTTTTCATGTTGTTTATGCTAGGGTCTCTTTTGGTGGTTTCGGCACCTGTTTTTGTGGCAATAGCCGATATCGTCCTCCCATTTGCTTTTCTCTCAACGTTTACGTGTACGACTTGCCATAGCTTGAAGCTGGATTGGGGTAGCTATAGTTTTCGATCATCTTTGGTTGATATACCTCTTATTTCTGTCGTACGATCACTTATAATTGTTTGTGTTTATTCTCTCTGCGATGTGCCGAGCCTCTCCCATGGTCCATACCTTGGCATGGCCATAGTCTGTGCACTGGCATCGGTTGTGATTCTCATAGTCAAGGCATTTTTGTTTCATGTGGTCGTTTCCTTGTCTGTTACTCCTCTCTGTGACAGGAGGCCTATATTTGAAGCATCCGTGGTGGATGCCTGTCTTGTTCTTGTTATCCATGGTCTTGGCACTTGGGCATATTGCAGTGGCATACAGGACAAGCTGTAGAGCTCGTCGGAAACTTCTCTTTCATCGAGTTGATACAGAATCTGTGCTGGCATGCAAAACAGTTTTCCATGGATACCCAAAGGTTCCTCGTTCACCTACCCCAAATGCAGGTAAAAATGGTAGAGTTGAATCTGAAGAGAAGAAACGGCTAATTTATGAAGAGAAAGACCTGCCTGCTAGAATGTTTGCTGATGCAGACAGTCTCTTCATTCAGTGTGAAGGCCTGCTTGTTCATTGCAAGATTGTAAGTCAAGAATCATGCCTTGGATCTCTCACATGTAGGTCTTTTCAGGATAACCGAGGTGGAAACCGCTGTGCTACCCCGGGGAGGTTAAGGATTGAAACTCCATTCGCCCTTCCTCCCTATGGTGTTTCCCTAACCAGGAGTTATAGCAATCACAAGACAGATGCATCGCTTTACACTCCTCTGTTAAGTGGTCATGTTGCAGTGGAGGTGGATCGAATATGGAACTCTGGTTTAAATGAACAGTCTGGGTTTGCTCAAAGTATACCTGAACTGAATTTAGACTCTTCAGCTGATGTGACAAATCCTGAAAGAGCAGATGCAAAGGTGGGACAAATGAAAGGCGGTTTTGATGGTATAATATTGATACATGGCTTTGGGGGAGGAGTATTTTCTTGGAGGCATATTATGAATCCTCTGGCCAGACAAACTGGTTGTTCTGTTGCTGCATTTGATCGGCCTGGCTGGGGACTGACATCTCGTCCTTCTAGAACAGAATGGGAAGAAAAGGAAATGCCTAATCCATATGAACTTCAATCTCAGGTCAATTTGCTGTTTTCGTTCTGTCGTGAAATGGGGTTTTCATCGGTTGTTCTTGTGGGTCATGATGATGGTGGCTTGCTCGCCTTAACGGCGGCTGAAAGAGCACATTCCTGTAGAGATGTTCATCAGGTAGAAGTTAAAGGTGTTGTGCTTGTCGGTGTGAGTCTCACAAGAGAAGTAGTGCCAGCATTTGCACGGATTCTGTTGCACACATCTCTTGGACAGCATATGTTGCGCCCACTTCTGCGTACAGAGATAAGCCAAGTTGCTAATCGCCGTGCTTGGTTTGATGCAACAAAATTAACATCTGATGTTCTTGACCTTTACAAGGCACCATTATGTGTAGAAGGATGGGATAAAGCTCTTCGGGAAGTCAGCAAGTTGTCCTCAAGCTCCATGCTTTCCCCACATAGTGCTACAGAATTGTT

Ace file of the UniGene sp_v2.0_unigene1526 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alpha/beta-hydrolase-like protein [Arabidopsis thaliana] gb\|AAG52432.1\|AC018848_3 unknown protein; 13661-11359 [Arabidopsis thaliana] gb\|AAM20542.1\| unknown protein [Arabidopsis thaliana] gb\|AAN15592.1\| unknown protein [Arabidopsis thaliana] gb\|AEE36382.1	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	alpha beta fold family protein	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	66%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	Epoxide hydrolase-like	IPR000639	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A845

Fln msg:

Fln protein: MGSGRGTLESFRRGIRTAFFMLFMLGSLLVVSAPVFVAIADIVLPFAFLSTFTCTTCHSLKLDWGSYSFRSSLVDIPLISVVRSLIIVCVYSLCDVPSLSHGPYLGMAIVCALASVVILIVKAFLFHVVVSLSVTPLCDRRPIFEASVVDACLVLVIHGLGTWAYCSGIQDKL*

Protein Length: 175

Fln nts: CGTCGTGACCTTGGCTGTCAGTCAATTTTTTGTTTCTCGCGTCTCAGTGTTAGCCGGCGTGGAATTTAGTCTCGGGGCTGTAGATGGTCAAAGCATCCATGCGTGTTTGAAGTTGGAAGCCTCCAGGGACGACTCTACGGTTGTTTGCGAGACTCTTGCTCTCGGAAGGTTCGATCACAAGGGGTACAGGGTGAGTGGTATTAGGAGTCTCTATTAGCCGGGATATCTTGATAAAGCATGGTTGCTTTTAGAGTCTCTCTGAAAATAAAGCCGATTCTGAAAAGCTAGGAAGGGATTCGAAGTTGGAACGCTTGAAGTTGGTTATTTGATCCAGAGTTTTTTTTTCTGTGTGGATCAGAGAAGAGAAGCGCTGTACGGTGATTCGAAATCTGCATCTTTGGAAGCTTAAAGAATTTCAGTTAGAGATGTACATATGCAAGTTGTTAGAGACTTAAATGCCCCCGGCTATTTACGAAGGGTTATGCCGATGCGAAACGGTGCGCAATAAATATTCTGTTTTGTTTTGCGTGATAATAAAACACTGAAGCGCTATAATTGTGCCGGATTTAGGATTCAAGAGAGGAGCAAAAGCCTGAAGGCCAAGGCACATAAGGCAGGGTACAGGT_-_ATGGGATCAGGACGGGGCACTCTGGAGAGCTTTCGCAGAGGGATTCGAACGGCATTTTTCATGTTGTTTATGCTAGGGTCTCTTTTGGTGGTTTCGGCACCTGTTTTTGTGGCAATAGCCGATATCGTCCTCCCATTTGCTTTTCTCTCAACGTTTACGTGTACGACTTGCCATAGCTTGAAGCTGGATTGGGGTAGCTATAGTTTTCGATCATCTTTGGTTGATATACCTCTTATTTCTGTCGTACGATCACTTATAATTGTTTGTGTTTATTCTCTCTGCGATGTGCCGAGCCTCTCCCATGGTCCATACCTTGGCATGGCCATAGTCTGTGCACTGGCATCGGTTGTGATTCTCATAGTCAAGGCATTTTTGTTTCATGTGGTCGTTTCCTTGTCTGTTACTCCTCTCTGTGACAGGAGGCCTATATTTGAAGCATCCGTGGTGGATGCCTGTCTTGTTCTTGTTATCCATGGTCTTGGCACTTGGGCATATTGCAGTGGCATACAGGACAAGCTGTAG___AGCTCGTCGGAAACTTCTCTTTCATCGAGTTGATACAGAATCTGTGCTGGCATGCAAAACAGTTTTCCATGGATACCCAAAGGTTCCTCGTTCACCTACCCCAAATGCAGGTAAAAATGGTAGAGTTGAATCTGAAGAGAAGAAACGGCTAATTTATGAAGAGAAAGACCTGCCTGCTAGAATGTTTGCTGATGCAGACAGTCTCTTCATTCAGTGTGAAGGCCTGCTTGTTCATTGCAAGATTGTAAGTCAAGAATCATGCCTTGGATCTCTCACATGTAGGTCTTTTCAGGATAACCGAGGTGGAAACCGCTGTGCTACCCCGGGGAGGTTAAGGATTGAAACTCCATTCGCCCTTCCTCCCTATGGTGTTTCCCTAACCAGGAGTTATAGCAATCACAAGACAGATGCATCGCTTTACACTCCTCTGTTAAGTGGTCATGTTGCAGTGGAGGTGGATCGAATATGGAACTCTGGTTTAAATGAACAGTCTGGGTTTGCTCAAAGTATACCTGAACTGAATTTAGACTCTTCAGCTGATGTGACAAATCCTGAAAGAGCAGATGCAAAGGTGGGACAAATGAAAGGCGGTTTTGATGGTATAATATTGATACATGGCTTTGGGGGAGGAGTATTTTCTTGGAGGCATATTATGAATCCTCTGGCCAGACAAACTGGTTGTTCTGTTGCTGCATTTGATCGGCCTGGCTGGGGACTGACATCTCGTCCTTCTAGAACAGAATGGGAAGAAAAGGAAATGCCTAATCCATATGAACTTCAATCTCAGGTCAATTTGCTGTTTTCGTTCTGTCGTGAAATGGGGTTTTCATCGGTTGTTCTTGTGGGTCATGATGATGGTGGCTTGCTCGCCTTAACGGCGGCTGAAAGAGCACATTCCTGTAGAGATGTTCATCAGGTAGAAGTTAAAGGTGTTGTGCTTGTCGGTGTGAGTCTCACAAGAGAAGTAGTGCCAGCATTTGCACGGATTCTGTTGCACACATCTCTTGGACAGCATATGTTGCGCCCACTTCTGCGTACAGAGATAAGCCAAGTTGCTAATCGCCGTGCTTGGTTTGATGCAACAAAATTAACATCTGATGTTCTTGACCTTTACAAGGCACCATTATGTGTAGAAGGATGGGATAAAGCTCTTCGGGAAGTCAGCAAGTTGTCCTCAAGCTCCATGCTTTCCCCACATAGTGCTACAGAATTGTT

Fln Alignment:

Contig1526___GTLESFRRGIRTAFFMLFMLGSLLVVSAPVFVAIADIVLPFAFLSTFTCTTCHSLKLDWGSYSFRSSLVDIPLISVVRSLIIVCVYSLCDVPSLSHGPYLGMAIVCALASVVILIVKAFL
D5A845______________GCLQRLRRAILTLFVMFMMVGSLLVCSTPLLICIMDVMLPWILLSIRLYAS--DLRVLWASYSFGSSLLDIPTISLLRSVIIICVYSVFDALGLSFGPYLWTTVFCGLVSGVLIVVKASL

SNPs (tot: 96)

Position	A %	C %	G %	T %	Probability
385		88		11	0.923564
392	87	12			0.992554
394		75	12		0.975346
397	12	87			0.992554
399			12	87	0.992554
400			12	87	0.992554
416	85		14		0.993533
422	85	14			0.993533
426			14	85	0.993533
428	85			14	0.993533
430	14	85			0.993533
431		14		85	0.993533
481		40		60	1.0
494		20	80		0.995493
566			33	66	0.997452
567	33	66			0.997452
568	66		33		0.997452
570	66		33		0.997452
572		33		66	0.997452
580	33	66			0.997452
582	66		33		0.997452
584	66			33	0.997452
585	66	33			0.997452
587	66	33			0.997452
588			33	66	0.997452
591			33	66	0.997452
652	16			83	0.994512
653	16			83	0.994512
656		83		16	0.994512
952		33	66		1.0
954			33	66	1.0
963		33		66	1.0
966		33		66	1.0
967			33	66	1.0
1086	20	80			0.999996
1087			20	80	0.999996
1089		80	20		0.999996
1091		20	80		0.999996
1093			20	80	0.999996
1094		22		77	0.999999
1099		77	22		0.999999
1105		77	22		0.999999
1107		22		77	0.999999
1108			22	77	0.999999
1362		85	14		0.993533
1378	14		85		0.993533
1380	14	85			0.993533
1482	85			14	0.993533
1483	85			14	0.993533
1537			33	66	1.0
1538		66		33	1.0
1541	66	16	16		0.988813
1543	66		33		1.0
1545		33		66	1.0
1550		66	33		1.0
1555		66	33		1.0
1556	33	66			1.0
1558	66		33		1.0
2007	11			88	0.923564
2075		10		90	0.90298
2081		90		10	0.90298
2082		90	10		0.90298
2083	10	90			0.90298
2084			10	90	0.90298
2086		90	10		0.90298
2087	10	90			0.90298
2088		10		90	0.90298
2092	10			90	0.90298
2093	10			90	0.90298
2094			10	90	0.90298
2098		10	90		0.90298
2099	90		10		0.90298
2190	61	38			1.0
2195	7	23		69	1.0
2203		16	83		0.999991
2206		83	16		0.999991
2207		83	16		0.999991
2209		16		83	0.999991
2210	16	83			0.999991
2277	12		87		0.992554
2283		12		87	0.992554
2340	71			28	1.0
2341	71		28		1.0
2345	71		28		1.0
2346	71	28			1.0
2347	71	28			1.0
2348	85			14	0.993533
2350			28	71	1.0
2353		28	71		1.0
2354	85		14		0.993533
2355		50	50		1.0
2357			85	14	0.993533
2358	85		14		0.993533
2359		85	14		0.993533
2360	66		33		1.0
2361			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain