SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1521

Length: 1358 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1521 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform 2 of Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3	-	-	0.0	50%
Blast2go	protein early flowering	-	-	1.76884e-14	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: O82804-2

Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 288 - 339

Fln protein: MKVARDVKGDDGKNGTDKTGAENGVLFPRLNVKETKTAGPRAPPRNKMALYEQFTIPSHRFVQTSHGAARQSPSALLNQPASCDGRFMYTPYYVSPNAYATVNYPGQFLGQNLISRTNITATESDKSAKCALAKSREHLSGTASYSNPGVSKSQPNPNPLSAAGIEVEDSSPQSSHRLSSNNSMGRTTVGGLHVHKSGQRTSIPVIACASEGLRTVPLQVDNVLKSPVQHSRSAVLPSDRIGQREREAGLCKDGSQPIHGDAYFVEDRLCLPRCQNEGAEDESRVDDD

Protein Length: 289

Fln nts: CACTGCCGTACAGAAGCTGGATGTGAATTGCGTGTTCTGCGCTTCGTCGCAATTCGTCGTAGCTTGGGTTCGCTCTTGCCGTGGAAATTTGACTGTTCGTCCAGCAATACAGCCCAAATTTCGTGCGAGGAGTCTGGTTTTGGTTGCAGCGTGAAAAAAAATGCTTTTGATTTACAGAAACAGCATTCGAAATTAAGCCGCTTTAACCGTGCGTTGGATTTCCTCTAATTTTGTGCGCGTTGGAGGAGTTCGATTTCAATGGGAAGAAATTCGTGTAGTTTTCATGGAATATCTGTGGAATTAAGTGAATTTTATCCTCTGAAGGATTTCATCGGTTGAGCTTGTCTAACTCCTCCGAATGCGTTGTTTTATTTTCAATTTTGGAGCGTTTTGCATCTTATTTGGTTGATTCTATCTGTCGACTTTGCATTAGTAGCGGGAAACGGAGGCCTTTTCCGTTTTACCAAGGTCGGGGTTAACTTTATCGGCAACG_-_ATGAAAGTTGCGAGGGATGTCAAGGGTGACGATGGCAAGAATGGAACGGACAAAACAGGTGCAGAAAACGGGGTTTTGTTCCCACGTCTGAACGTGAAGGAAACGAAAACGGCCGGGCCACGAGCTCCTCCCAGGAATAAAATGGCCTTGTATGAGCAGTTCACGATACCGTCTCACCGTTTTGTTCAGACATCCCACGGTGCTGCCCGGCAAAGCCCAAGCGCATTACTTAATCAACCGGCTTCGTGTGATGGGAGGTTTATGTATACTCCATATTATGTTTCTCCAAATGCTTATGCAACTGTAAATTATCCAGGCCAGTTTTTGGGACAGAATTTGATATCTCGCACTAATATCACTGCAACAGAGTCTGACAAGTCAGCAAAGTGTGCTCTAGCCAAAAGCAGAGAACATTTATCTGGAACAGCAAGTTACAGTAACCCAGGCGTTTCAAAATCTCAACCTAATCCAAATCCCCTCTCAGCAGCTGGCATTGAAGTTGAAGATTCATCACCGCAATCATCTCATAGATTGAGCAGTAATAACTCAATGGGGAGAACTACAGTGGGAGGCTTGCATGTGCATAAAAGTGGGCAAAGAACTAGCATTCCTGTGATAGCCTGTGCTTCTGAGGGCTTGAGAACTGTTCCACTGCAGGTGGACAATGTGTTGAAATCTCCTGTTCAGCACAGTCGAAGTGCTGTATTGCCAAGTGATAGGATAGGACAGAGAGAGAGAGAAGCTGGTTTATGTAAGGATGGAAGTCAGCCTATTCACGGTGATGCATATTTTGTTGAAGACAGATTGTGTTTACCAAGGTGTCAAAATGAAGGAGCTGAAGATGAGTCTAGAGTAGATGACGATG

Fln Alignment:

Contig1521___LFPRLNVKETKTAGPRAPPRNKMALYEQFTIPSHRFVQTSHGAARQSPSALLNQP
O82804-2____________MFPRLHVNDADKGGPRAPPRNKMALYEQLSIPSQRFGDHGTMNSRSNNTSTLVHP

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
382	20		80		0.995493
479	80			20	0.995493
608	85		14		0.993533
653		14		85	0.993533
654		14		85	0.993533
655		14		85	0.993533
656	14		85		0.993533
657		85		14	0.993533
798		12	87		0.992554
799	12			87	0.992554
901	87			12	0.992554
902		87	12		0.992554
903	12		87		0.992554
905	87			12	0.992554
906	87		12		0.992554
908	87	12			0.992554
909	12		87		0.992554
913	12			87	0.992554
914	12	87			0.992554
915		87	12		0.992554
918		12		87	0.992554
919	12			87	0.992554
921	12	87			0.992554
934	14		85		0.993533
963	33		66		1.0
966			66	33	1.0
972	25	75			0.996473
976		75	25		0.996473
977	25	75			0.996473
978	75		25		0.996473
979	75			25	0.996473
980	75		25		0.996473
982		25		75	0.996473
983	25			75	0.996473
985	75	25			0.996473
986	75	25			0.996473
989			11	88	0.923564
990	77		11	11	0.968132
991	77		11	11	0.968132
992	88	11			0.923564
993	88		11		0.923564
994		88		11	0.923564
995	77		22		0.999999
1000	87	12			0.992554
1001	12			87	0.992554
1002	12			87	0.992554
1004		87	12		0.992554
1005			87	12	0.992554
1006		12	87		0.992554
1008		12	87		0.992554
1093		20		80	0.995493
1094		20		80	0.995493
1096	20			80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
126	138	TC TC TC TC TC TC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain