SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1516

Length: 2227 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1516
CGTCGTGACCTTGGCTGTCACTCAACCTTACTTCACAAAATAGTAACTGGATCTAAGTCCTTCAGACAACTATTGGAGATATGTTTGCGTGGATACCAGAAATGGGTATGGCACTTTACAAATGATCTGGTGGCATTTTCTCCCGCTGCAACACTAATACGAGCACTCAAAAGTTCAGATCGCAGGTGTGATCACAGGAATCGAACATGAAAACCAACAAAATGAAATTCCAGAAGCAAATTTTCCAGGGCGTGTTTGTCGGGGTCGTGGTGCTAATGCTGCCTCTGTTGCATCCTGGTGTCTTCACACCGCTCGGGAACGCGATGCCTTCGATTTTCTCGGAATGGAATGCCCCTAAAGCTAGACACCCTGCTTTGTTGGAAGCTGCTTCGAAGTCTCGCCTCATGGATAAAGAACCTTCTGATCTTTGGAGTCCGTTGCCAAATCAAGGCTGGCAACCTTGCACTGAAAGTTTGCCTTTATCCATACCTCATGGAAAGACTAGGGGATATGTCCAAGTATTCCTGGAAGGGGGACTTCAACCAGCAACGAATGGGGATATGTGATGCAGTTGCTGTTGCAAAAGTTTTGAATGCAACACTGGTTGTTCCTCAATTTGATATGAACCCTGTTTGGCAAGATTCAAGTCTCATTTGCAGATATATTTGATGTGGATCACTTCATACAAATTCTAAAGGATGACGTAACTATAGTGAAAGATGTACCAAGGGAATTTTACTGGAGCACTCGGCAATACTATGCAACAGGGATTCGACCTACAAGAGTGAAGACAGCGCCTGTCCATGCTCCAGTAGCTTGGTATTTGGAAAATGTACTGCCTGTATTGGAGAGTTATGGAATTGTTGCCATTGCTCCCTTTTCTCACCGGCTGGCTTTTGATAACATGCCTGTAGAAATCCAACGACTACGCTGTAAAGTTAATTTTCAGGCATTGGTTTTTGTTCCTTACATACGCTCTATTGGAGATGCTCTTGTAAGCCGTCTCAGATCACCTTCTTATAGCATTCAGGAAACAGATCAAAGAAAATTCCAAACAGAATCAAATGGAGATCTTTATAAAGGGTCTGGAAAATTTGTGGTCTTACATCTTCGATTTGACAAGGATATGGCTGCTCATTCTGCATGCGATTTTGGAGGGGGCAGGGCAGAGATGTTAGCCCTTGCAAAGTATAGACAAGTTCTTTGGCAAGGAAGAGTGCTGAATTCTCAATTTTCTGATGAAGAGCTTAGAGGTCAAGGAAGGTGCCCCTTAACCCCTGAAGAAATTGGATTACTATTAGCAGCTTTAGGCTTTGGCAATAGGACTCGACTTTACCTTGCTTCTCACAAGGTATATGGAGGGGAAGCAAGAATTTCAATACTGCGGCAGTTGTTTCCTTTAATGGAAGATAAGAAGAGTCTTGCAACAGAAGAGCAACTGAAACAACTTGAAGGGAAAGCTTCTATTTCGGCTGCTGTGGATTATCACGTCAGTATGCAGAGTGATATCTTCATTTCAGCATCACCTGGCAACATGCACAATGCTTTGGCAGGGCACCGTGCCTATAACTATCATAAGAAAACAATTCGTCCACACATGACCTCACTGGGGCAGCTGTTCCTGAACAGAAGTATTGACTGGTCGGACTTTCAACATAAGGTTAGAACTGGTCATAAGCAGAGACAAGGGCAACTCAGGTTACGAAAAGAAAAGCAGTCAATATATACATATCCTGCTCCAGATTGCATGTGCCAACTATGAACGATTGCTTTGGAAAGCAATTATGCAGAATGTATTTTGCACGTTCTCAGCTTGTATTAATACTTTGTAGTGTACAGGGCTTTTGTTTTATAGCTGCGTCAATTTATTTTCGTTTATAAAATGCTCAGGCATTTGCATGAAAGGTAGAATTGGGCTATAGTAAATATGATTCATAATGAACTTTGGAAAAGTCCATTTTCTATAGCATATACACCTTCTGTTTAAAAGGCTCGGGTTCTTTGATAATTTGTTCCATGTTGGGTGAAGCCTGTGGCTTGTTGCAGCTGATGTATTGTGCTATTTCATGTATGACAAATGTCCAGCGTGATTTACTTACAGCGTGATTTACTTACGACTATGGTCCTTTAGTTATGTGGAAGCATAATCGATGTGCATCTTTGTAAAAGGCAGTGAACCTGACTGCGAGAAAACGGTTTCACCAGAAAACATTCAATATGTAATTTA

Ace file of the UniGene sp_v2.0_unigene1516 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	O-fucosyltransferase family protein [Arabidopsis thaliana] gb\|AAP68214.1\| At4g24530 [Arabidopsis thaliana] dbj\|BAE99793.1\| PsRT17-1 like protein [Arabidopsis thaliana] gb\|AEE84921.1\| O-fucosyltransferase family protein [Arabidopsis thaliana]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	55%
Blast2go	duf246 domain-containing protein at1g04910-like	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	SKP1 component	IPR001232	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3		IPR004348	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	SKP1 component, dimerisation	IPR016072	-	-
Sma3	SKP1 component, POZ	IPR016073	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RJX2

Fln msg: Overlapping hits, possible frame ERROR between 557 and 532, and possible frame ERROR between 648 and 650,

Fln protein: MKTNKMKFQKQIFQGVFVGVVVLMLPLLHPGVFTPLGNAMPSIFSEWNAPKARHPALLEAASKSRLMDKEPSDLWSPLPNQGWQPCTESLPLSIPHGKTRGYVQVFLExxxxxxxxxxICDAVAVAKVLNATLVVPQFDMNPVWQDSxVSFADIFDVDHFIQILKDDVTIVKDVPREFYWSTRQYYATGIRPTRVKTAPVHAPVAWYLENVLPVLESYGIVAIAPFSHRLAFDNMPVEIQRLRCKVNFQALVFVPYIRSIGDALVSRLRSPSYSIQETDQRKFQTESNGDLYKGSGKFVVLHLRFDKDMAAHSACDFGGGRAEMLALAKYRQVLWQGRVLNSQFSDEELRGQGRCPLTPEEIGLLLAALGFGNRTRLYLASHKVYGGEARISILRQLFPLMEDKKSLATEEQLKQLEGKASISAAVDYHVSMQSDIFISASPGNMHNALAGHRAYNYHKKTIRPHMTSLGQLFLNRSIDWSDFQHKVRTGHKQRQGQLRLRKEKQSIYTYPAPDCMCQL*

Protein Length: 521

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCTTACTTCACAAAATAGTAACTGGATCTAAGTCCTTCAGACAACTATTGGAGATATGTTTGCGTGGATACCAGAAATGGGTATGGCACTTTACAAATGATCTGGTGGCATTTTCTCCCGCTGCAACACTAATACGAGCACTCAAAAGTTCAGATCGCAGGTGTGATCACAGGAATCGAAC_-_ATGAAAACCAACAAAATGAAATTCCAGAAGCAAATTTTCCAGGGCGTGTTTGTCGGGGTCGTGGTGCTAATGCTGCCTCTGTTGCATCCTGGTGTCTTCACACCGCTCGGGAACGCGATGCCTTCGATTTTCTCGGAATGGAATGCCCCTAAAGCTAGACACCCTGCTTTGTTGGAAGCTGCTTCGAAGTCTCGCCTCATGGATAAAGAACCTTCTGATCTTTGGAGTCCGTTGCCAAATCAAGGCTGGCAACCTTGCACTGAAAGTTTGCCTTTATCCATACCTCATGGAAAGACTAGGGGATATGTCCAAGTATTCCTGGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATATGTGATGCAGTTGCTGTTGCAAAAGTTTTGAATGCAACACTGGTTGTTCCTCAATTTGATATGAACCCTGTTTGGCAAGATTCAxxxGTCTCATTTGCAGATATATTTGATGTGGATCACTTCATACAAATTCTAAAGGATGACGTAACTATAGTGAAAGATGTACCAAGGGAATTTTACTGGAGCACTCGGCAATACTATGCAACAGGGATTCGACCTACAAGAGTGAAGACAGCGCCTGTCCATGCTCCAGTAGCTTGGTATTTGGAAAATGTACTGCCTGTATTGGAGAGTTATGGAATTGTTGCCATTGCTCCCTTTTCTCACCGGCTGGCTTTTGATAACATGCCTGTAGAAATCCAACGACTACGCTGTAAAGTTAATTTTCAGGCATTGGTTTTTGTTCCTTACATACGCTCTATTGGAGATGCTCTTGTAAGCCGTCTCAGATCACCTTCTTATAGCATTCAGGAAACAGATCAAAGAAAATTCCAAACAGAATCAAATGGAGATCTTTATAAAGGGTCTGGAAAATTTGTGGTCTTACATCTTCGATTTGACAAGGATATGGCTGCTCATTCTGCATGCGATTTTGGAGGGGGCAGGGCAGAGATGTTAGCCCTTGCAAAGTATAGACAAGTTCTTTGGCAAGGAAGAGTGCTGAATTCTCAATTTTCTGATGAAGAGCTTAGAGGTCAAGGAAGGTGCCCCTTAACCCCTGAAGAAATTGGATTACTATTAGCAGCTTTAGGCTTTGGCAATAGGACTCGACTTTACCTTGCTTCTCACAAGGTATATGGAGGGGAAGCAAGAATTTCAATACTGCGGCAGTTGTTTCCTTTAATGGAAGATAAGAAGAGTCTTGCAACAGAAGAGCAACTGAAACAACTTGAAGGGAAAGCTTCTATTTCGGCTGCTGTGGATTATCACGTCAGTATGCAGAGTGATATCTTCATTTCAGCATCACCTGGCAACATGCACAATGCTTTGGCAGGGCACCGTGCCTATAACTATCATAAGAAAACAATTCGTCCACACATGACCTCACTGGGGCAGCTGTTCCTGAACAGAAGTATTGACTGGTCGGACTTTCAACATAAGGTTAGAACTGGTCATAAGCAGAGACAAGGGCAACTCAGGTTACGAAAAGAAAAGCAGTCAATATATACATATCCTGCTCCAGATTGCATGTGCCAACTATGA___ACGATTGCTTTGGAAAGCAATTATGCAGAATGTATTTTGCACGTTCTCAGCTTGTATTAATACTTTGTAGTGTACAGGGCTTTTGTTTTATAGCTGCGTCAATTTATTTTCGTTTATAAAATGCTCAGGCATTTGCATGAAAGGTAGAATTGGGCTATAGTAAATATGATTCATAATGAACTTTGGAAAAGTCCATTTTCTATAGCATATACACCTTCTGTTTAAAAGGCTCGGGTTCTTTGATAATTTGTTCCATGTTGGGTGAAGCCTGTGGCTTGTTGCAGCTGATGTATTGTGCTATTTCATGTATGACAAATGTCCAGCGTGATTTACTTACAGCGTGATTTACTTACGACTATGGTCCTTTAGTTATGTGGAAGCATAATCGATGTGCATCTTTGTAAAAGGCAGTGAACCTGACTGCGAGAAAACGGtTTCACCAGAAAACATTCAATATGTAATTTA

Fln Alignment:

Contig1516___FTPLGNAMPSIFSEWNAPKARHPALLEAASKSRLMDKEPSDLWSPLPNQGWQPCTES--LPLSIPHGKTRGYVQVFLExxxxxxxxxICDAVAVAKVLNATLVVPQFDMNPVWQDSSxSFADIFDVDHFIQILKDDVTIVKDVPREFYWSTRQYYATGIRPTRVKTAPVHAPVAWYLENVLPVLESYGIVAIAPFSHRLAFDNMPVEIQRLRCKVNFQALVFVPYIRSIGDALVSRLRSPSYSIQETDQRKFQTESNGDLYK-GSGKFVVLHLRFDKDMAAHSACDFGGGRAEMLALAKYRQVLWQGRVLNSQFSDEELRGQGRCPLTPEEIGLLLAALGFGNRTRLYLASHKVYGGEARISILRQLFPLMEDKKSLATEEQLKQLEGKASISAAVDYHVSMQSDIFISASPGNMHNALAGHRAYNYHKKTIRPHMTSLGQLFLNRSIDWSDFQHKVRTGHKQRQGQLRLRKEKQSIYTYPAPDCMCQL
B9RJX2______________FRPLGRAYPSLFSEWNAPKPRHFPLLRAALNRPILSREQSELWSPLPYQGWKPCTEPNIIQPSLPQ-KSQVYIQVFLDxxxxxxxxxICDAVAVAKILNATLVIPHLEVNPVWQDSSxSFVEIFDADHFIDILRHEISVVKEPPSKYSWSTREYYATGIRATRIKTAPLHASANWYLENVLPVLQSYGIAAIAPFSHRLAFDNLPTNIQRLRCKVNFEALVFVAHIKSLGDTLVNRLRYPSGA----SGTEFVKERRGDTGKEGSGKYVVLHLRFDKDMAAHSSCDFGGGKAERLALAKYRQVLWQGRVLNSQFTDEELRGQGRCPLTPEEIGLLLAALGFSNSTRLYLASHKVYGGEARVSTLKQLFPSMEDKKSLASAEELALVEGKASLLAAVDYYVSLQSDIFISASPGNMHNALVGHRAY-LNLKTIRPNMVLLGPLFLNKSVEWSEFQTAVVKGHKNRQGQIRLRKEKQSIYTYPIPDCMCQL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
439	16			83	0.994512
440	16		83		0.994512
441		83		16	0.994512
442	66		33		1.0
500	16		83		0.994512
669		16	83		0.994512
670	16		83		0.994512
672	20		80		0.995493
686	16			83	0.994512
718			60	40	1.0
757		60		40	1.0
1240		80		20	0.995493
1411		75		25	0.996473
1412	75		25		0.996473
1415		75		25	0.996473
1416			25	75	0.996473
1419	25			75	0.996473
1423		25	75		0.996473
1426	25			75	0.996473
1429	75			25	0.996473
1434	25		75		0.996473
1905		16		83	0.994512
1912	40		60		1.0
1937		40	60		1.0
2126	25	75			0.996473
2130	50	25		25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain