SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1515

Length: 1425 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1515 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein aluminum sensitive 3 [Arabidopsis thaliana] sp\|Q9ZUT3.1\|ALS3_ARATH RecName: Full=Protein ALUMINUM SENSITIVE 3; AltName: Full=ABC transporter I family member 16; Short=ABC transporter ABCI.16; Short=AtABCI16; AltName: Full=ybbM homolog protein gb\|A	-	-	70%
FL-Next	sp=Protein ALUMINUM SENSITIVE 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	72%
Blast2go	protein aluminum sensitive 3	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to aluminum ion	GO:0010044	Biological Process	0.0	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Conserved hypothetical protein CHP00245	IPR005226	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9ZUT3

Fln msg:

Fln protein: MAVQWAEFFEGMLKPLAATAIVALAVALSFFQKLGLGWEMVYSISRSFLQLSIIGFVLQFIFTQKNAIWILAAYLFMVSVAGYTAGQRAKHVPRSSFVAGASILTGTSLTMFLLVILRVFEFTPRYIIPVAGMVVGNAMTVTGVTMKRLRDDIKIQQSLVEAALALGATPRQATVHQVRRALIIALSPVLDNAKTVGLISLPGAMTGLIMGGASPLQAIQLQIVVMNMMIGAATFSSIMSTYLSWPSFFTKAYQLETKVFMAE*

Protein Length: 265

Fln nts: ATGGGATAATAGGAGGTGGATTCTCCACTGGTGAACCTACCCCAGGGTTCTCATCCCTCCGGCCCCCGCTGATGTTGGCGTTCAAAACTAAACAGATGGCAGCTGAGACATCTCAAACCTGTATGAGCGAACTTAAACAGAGGACATTGAATGCTTTGGTTCTTCAGAAATTTTAGAGTGTCGCTTGGGGCGTA_-_ATGGCTGTTCAATGGGCAGAGTTTTTCGAAGGAATGCTGAAGCCATTGGCTGCTACAGCAATAGTGGCTTTGGCAGTGGCGCTGTCCTTTTTCCAGAAACTTGGCTTGGGGTGGGAAATGGTTTATTCAATATCAAGGTCATTCCTCCAGCTCTCAATTATTGGATTTGTGCTGCAATTCATATTTACCCAGAAAAATGCTATATGGATCTTGGCGGCCTACTTATTCATGGTGTCTGTGGCTGGTTATACAGCAGGTCAACGTGCAAAGCATGTCCCACGTAGCTCATTTGTTGCAGGGGCATCCATTTTAACAGGAACATCATTGACTATGTTTTTGCTAGTGATATTGCGTGTCTTTGAGTTTACTCCCCGATACATCATTCCAGTAGCAGGGATGGTGGTTGGAAATGCAATGACAGTAACTGGTGTGACTATGAAGAGGCTGCGGGATGACATCAAAATTCAGCAGAGTTTGGTTGAGGCAGCCCTCGCTCTTGGAGCAACTCCAAGGCAAGCAACAGTTCATCAGGTAAGAAGGGCCTTGATAATTGCGCTTTCGCCAGTTTTGGACAATGCAAAGACAGTTGGACTGATTTCTCTCCCTGGGGCAATGACTGGTCTAATAATGGGTGGTGCCTCCCCTCTTCAAGCAATACAGCTTCAAATCGTTGTCATGAATATGATGATAGGTGCTGCGACATTCAGTAGTATCATGTCAACGTACCTCAGTTGGCCCTCCTTTTTCACAAAAGCATATCAACTTGAAACAAAGGTTTTCATGGCAGAATAG___GATTTTACAATGATCCAATGACTGGCAATCTTGGAAGATATTTAACCCAGTCAACATATCAGATCATCTTCTGAGGAGAAAAGGTCAAGTCGCTCAATCATAAACTTAATTTTGTTGTGAAATTTTCTAAAACTTGTCTTAACCGGACTGAGTTGTAATGATGCTGGGCCTTGGCCATTAACTGCGTTCCTAGTTTTTGTCCACACATAAGAAGGACAAGGCATGTAGCAAAGCATGTCATTCCTTCAGTTTCGAGCATCAAGTCGTATTTTAGTATACTTAATAGATCTGCATGAATCAGATGGGGAATAAAAAGGAACCCAGAAGGATCCTCACATAAGCAATCTAGCACTTGAGTTCAAAGGAATCAATGTACAGTGTAATATTATGCAACGATTTTGAGTGTTTTCAAAATATTTGATATACTGATTATGACTTT

Fln Alignment:

Contig1515___MAVQWAEFF----------EGMLKPXXXXXXXXXXXXLSFFQKLGLGWEMVYSISRSFLQLSIIGFVLQFIFTQKNAIWILAAYLFMVSVAGYTAGQRAKHVPRSSFVAGASILTGTSLTMFLLVILRVFEFTPRYIIPVAGMVVGNAMTVTGVTMKRLRDDIKIQQSLVEAALALGATPRQATVHQVRRALIIALSPVLDNAKTVGLISLPGAMTGLIMGGASPLQAIQLQIVVMNMMIGAATFSSIMSTYLSWPSFFTKAYQLETKVFMAE
Q9ZUT3______________MDLKWDDFFNDYEWLIVFLKGMVKPAAALVVVLLAVILSYSQNLSLEGEMIYSVSRSFLQLSVIGFVLQFIFNQENSGWIILAYLFMVSVAGYTAGQRARHVPRGKYVAGLSILAGTSITMFLLVLLNVFPFTPRYMIPIAGMLVGNAMTVTGVTMKQLRDDIKMQLNLVETALALGATPRQATLQQVKRALVISLSPVLDSCKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMMVGAATVSSITSTYLCWPSFFTKAYQLQTHVFSSD

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1079	20			80	0.995493
1109	80		20		0.995493
1196		63		36	1.0
1309	83			16	0.999991
1313			16	83	0.999991
1323	10			90	0.90298
1327		88	11		0.923564
1329		11	88		0.923564
1330	11	88			0.923564
1332	88		11		0.923564
1333	11			88	0.923564
1335			11	88	0.923564
1375	50		50		1.0
1391	66	33			1.0
1392		33	66		1.0
1393		16	83		0.994512
1394		20		80	0.995493
1397		50	50		1.0
1398	50	50			1.0
1403			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain