SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1511

Length: 1346 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1511

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polcalcin (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9H5_PSEMZ	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	polcalcin	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	78%
Blast2go	response to cold	GO:0009409	Biological Process	78%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	78%
Blast2go	cytoplasm	GO:0005737	Cellular Component	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Recoverin	IPR001125	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Parvalbumin	IPR008080	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1R0

Fln msg: your sequence is longer than subject: 226 - 194

Fln protein: MGLQRLLTLRRSQSQPSSPRLSESGSRRQSGSQLSSIKFLSKKIFTQHRRSSSSQPETPRSPRVSFFGSGRSNHIDSSLASTRLVKDLEDVFKKFDANGDGKISWLELRSILSSLGCKATEEEVKKMIKEADRDGDGFIDLQEFVDLNTQGIDSASSLKDLRDAFEIFDLDRNGAISSEELHIVLRNLGEHTTMEDCQLMIRGVDCDGNGQVDFEEFKTMMSSSI*

Protein Length: 227

Fln nts: ATGGGGCGTCTACCATGCATGCTTTGTTTAGGTGATACTTCCATTTTGTAAGCATGGCCAACGACCTTGATGTATTCTGGGCGCTTTAGTTGATTCTTCGCAGCGGGCCAGGCGAAGATTTCTGAGGAATATTGAAATTTGACACTTGTAAACCATCCTGGCAGCAGTAAGAGTCTTCAATAGGGATTTTGGTCTTCCCAAAAAGATTCCAAGATAAATATCGTTACCCGTCATATTTGGGTTCGTCAGGGAAATTGCAGCTACTAGCAGCCGTAATTACGTTGATAATTTTGTCTGGCCATAAACGGGCTCTCACCTGCAAATCTTTTTGGCGGTTCACGAAACTACTTGCTTTATATTAGAAACCTCTTGGAAGTTACGGGAAAGATTTTAGCTATTGGAGTGACGGCATTGCGGTTGCTGAGAAAGAGCAGCTGTTAAAGATTGCTTGTTCTGGGCGGCAACTTTGCTGATCTGGTCATTATATGGTAAGAAACCCTCAACTAAACAAGCTTTTCGTGGTGCAAGCGAGAGTCTAGCGGGTAAAGAAGCTTTCTGCAGGCACAGAGTTCGAAGAAGG_-_ATGGGATTGCAGCGGTTATTAACTCTTAGGCGGTCTCAATCACAGCCAAGTTCGCCACGGCTATCCGAATCAGGTTCTCGGCGTCAGTCAGGTTCGCAATTGTCATCAATCAAGTTTTTAAGCAAGAAAATATTCACCCAACATAGGCGTTCTTCCTCCTCCCAACCTGAAACTCCAAGATCTCCGAGGGTTTCTTTCTTCGGAAGCGGCAGATCGAATCACATTGACTCCAGCCTTGCATCCACCCGACTTGTCAAAGATCTGGAAGATGTTTTTAAGAAATTTGACGCTAACGGAGATGGAAAGATATCGTGGCTGGAGCTCAGGTCGATCTTGAGTTCCCTTGGTTGCAAGGCAACCGAAGAAGAGGTGAAGAAGATGATCAAAGAAGCGGACCGCGACGGAGACGGTTTCATTGATTTGCAAGAATTCGTCGATTTGAATACACAAGGCATCGATTCTGCTTCCAGCCTGAAGGATCTGAGAGATGCTTTTGAAATTTTTGATTTGGATAGAAACGGGGCAATTTCTTCAGAGGAGCTTCACATTGTTCTGCGAAACCTGGGAGAGCACACCACAATGGAGGACTGTCAATTGATGATAAGGGGTGTAGATTGCGATGGAAACGGGCAAGTTGATTTCGAAGAATTCAAAACTATGATGTCCAGTTCCATATAG___ATGCTATTTTTTCTGACATGTTATGCAAGTGCATACATTAATGCCGTTGTTTCTGTTTGGACATGGTTTCTTATTTTGGGCTCCTTTT

Fln Alignment:

Contig1511___SSSSQPETPRSPRVSFFGSGRSNHIDSSLASTRLVKDLEDVFKKFDANGDGKISWLELRSILSSLGCKATEEEVKKMIKEADRDGDGFIDLQEFVDLNTQGIDSASSLKDLRDAFEIFDLDRNGAISSEELHIVLRNLGEHTTMEDCQLMIRGVDCDGNGQVDFEEFKTMMSSS
A9P1R0______________SSRSEPSEPSSVSESLAGALHNR------------EELEDVFKRFDANGDGKISSSELGDILRSMGCRVGPRELGLMMKEADADGDGFISLEEFIDLNTKGNDKAACLEDLKNAFKIFDLDRNGSISADELYQVLKGMGDGSSREDCQNMITGVDRNGDGLINFEEFKTMMTTS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
434	25		75		0.996473
475		88	11		0.923564
476			11	88	0.923564
566	75		25		0.996473
726			88	11	0.923564
728		88		11	0.923564
889	87		12		0.992554
1341		62		25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain