SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1504

Length: 6467 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1504
CGTCGTGACCTTGGCTGTCAGTGGAGGTGTCCAAGTCATCATATTTTGACAGTGAACAGTGGGCAGGGGTAGTGAGCGGTGTGGAGCGCAGTCCATTGTAGGGGCATGCAGGCGCTGTACATACATTGCTTTGTATTGAAATAAGCCCCTACTAATCCCACTATTTCAACCTGTAAATGCTTATATTGCCTTCGGCACAGTAGCGCAGTATCGGTAGATCATGGATCGATTTGCATTTTGCCCAAAAGGTCTCTACATTTGATGGAGGCATGGCATTTTGAGTTTCAGTGGTGGTTTACAGTTCTGAAGTAAGCCATTTGTAGAATTTTTAGCTTCATTTGCATTTTCAGGCTCCATTTCAAGGTTTTTTCAGCTTAAGTAGCTGTTTCAATCGACGGATTGATGTTTTGCGTCATTCAACCAGGAGTTTGAGCTTCAATAGAAAGCACTCACTGCATTTGTGCCCGAGAAGCTCCGACAAAAGTCTGTTTTGAGCTTTGATCGTGATTTCAGGTTCAAACAAGGTATTTGCAGCATCTTTATGTACAGCATTGTGAGCTTCACTCGAAATTATTTTGGATCTTTACAGAATGAGAAGGAATTAGAAACTTTATTCTAGGTTTTCCGCGCCCGTACTGTCCCAAAAATGGAAGAAGAAAACGGTTCTGGTTTTCTTTACGCGAAAGAGCCAACAGCAGAGAATGGCGACAAAGAGAAGCACGATTTACCTATCGATCAGACGGCAGAAGACGAGACTGCGAGTTCGGTAGTTGAAAATGCAGGAAAATTAACCGGCAAACCATCCAATGCTGCAACGAAAAGTCTTCGAACAAGCAAACCAGTCTCAAAGCTCTCCACTACAGCCAAAACGTCCTCTGCATTGCGAGGGTCGACGGTCAGATCCACTCCCACGACACCAGGTTCACGATCCTTGCCTTCCACAGCTTCCAGAACCCGAAGGGTCATAACAATGGCAATTTACCAACTGATAACGTCGTTCGGACGGGCCTTACGAGTGTTTCAGGCTCCAAGGCTGCTGCTAGTGCCAATTCTCACAATAGACGGAACAGCATTGGGACGCCCTTTGGAATTGCAGAGCGACGGGTGAGCACTAGCTCTCCTGCCACTCCGCGGCAGCGACTTTCGTCGACGCCATCAACTCCTGCAAAGCCGAGTCCTTCAGTTACTGAAACCCGCCGAGCTTCTCTTTCAAGCGTGTCTACCTTGGCTGTTGCCAGTTCAAGTTCTGCAGAGCAGAAGAAATCCTCGGTTCCGTCGGCTTCGAAATTTTCTTCATCTTCTTCTTTAAAATCTCCGTCTCTCGCCGGATCTCCCAAGCCGTTCAGTCCATCTACGCGATCGTCTCCCAGACCGACCGAAAATGCCGTACGCCACACGGCAGCGGCGAAACCATCTGTTCCTTCCTCCCGGGCGTCGCTGCAATCTCCGAGTCCGTCTGTCGGTGGAAGAAATAAAACGGCCTCTACACTGGCGGAGACTAGACCGCGAACCACCAAGTCTTTGGATGGTGGAAATGGCATTTTGAGAAATCAGGCCTCGTCGTTGGCAAGAGCTGCGAGACATGCGCCCACGTCTCTGTCAACAGACAGAATTTCGACGCTTTCGAATCGCAGGAAATCATTAACTCCTGACAGTAAAGATTCCCGATTCATCGCCCTTCCACAAGTTGAAGTTAAAGCAGGAGATGACGTGAGGTTAGATCTCCGAGGCCAGAAAGTTCGCAGCCTTGATTCCAACGTCCTAAATTTATCCCCAAATTTAGAGTTTGTTTATCTCAGGGATAATAAGTTGGCGTCATTGGTTGGCATTGAGATTCTGAAGAAGGTGAAGGTTTTGGATCTCAGCTTTAACGAGTTTAAAGGATCTGGTTTTGAGCCGCTAGAAAATTGTAAAGGTCTTCAGCTATTGTACTTGGCAGGGAATCAGATTACATCACTTACTGGGATTCCTGAACTTCCGAATTTAGAGTTTCTTTCAGTTGCTCAGAACAAATTAAAGTCTCTTGCAATGGCAACTCAGCCTCGGCTTCAGGTCTTGGCAGCGAGCAAAAATAAAATATCAACTTTGAAGGGTTTTCCACATTTGCCAGTTCTCGAGCATCTGCGGTTGGAGGAGAATCCTATTTTGGAGATGCCTCACTTGGAAGCAGTGGCTATCTTGTTGGTTGGACCAACACTTAAGAAGTTCAATGACCGAGATCTCTCTGTTGAAGAGCAGAAGCTTGCAAAATGTTATCCTGCTCACACAGCTTTATGCATCAGAGATGGCTGGGACTTCTGTGGTCCTGAAGACGCTGCTGATTCAACAATGCAGTTTCTTATCGAACAATGGAGAGGTCACTTGCCACCAGGGTACCTGCTAAAGAAAGCCTCTATTGATCCACCATTTGAGGAAGATGCCTGCCGTTGCCATTTTGTTTTTGTAAAGGACCGTAATGTGTATGATGAAGCTGATTTGGCTTTAAGATTGCAGTGGTTTATAGGAGAAAAGACACCAACAAACTTTGAGATCATTAAAGGTGCTGTGACTGAGGTGTACTGGCCAAAGCATGAAGAGATCGACAAATTCTTGAAGGTGGAGTGCACTCCAGTTTTGAGGGGGACTGAGTATCCACCCATTTTTGCTGTATCTTCGCCCATTGCTCCTGGAACTGGAAGTCCTAAAGTGCTGAATCTAAGAGTCGAGGGTGAACTTATTGAAGGCAATTTGATTAGAGGGTTTGCTGAAATTGCTTGGTGTGGTGGAACTCCTAGTAAAGGTGTAGCAAGTTGGCTAAGACGGCGACGGAACAGTAGTCCTGTTGTCATTGTCGGGGCCGAAGAAGAAGAATATCGGTTGACATTGGATGATGTTGATTCTAGTCTTGTGTTTATGTACACACCTGTTACAGAGGAAGGTACCAAAGGAGAACCACAATATGCCATGACAGATTTTGTTAAAGCAGCTTTTCCTTCTGTCAGAAATGTGCAGGTTGTTGGAGATCTTGTGGAGGGTAAGACAATTAAAGGAATTGGCACATACTTTGGAGGAAAAGAAGGCCGGAGCAAATTTGAATGGTTACGGGAGGATAAGGACTTAGGGGAGTACATGATTGTGTCAAGAGGAGATGCAGAATATACTTTGACTGAGGAGGATGTGGGTCAATGTATGGTGTTTGTTTATACACCAGTCAACTGGGAGGGTCAGGAAGGCAAACCTTCTACTGCTGTTACGGGGAAAGTATTGCATGCTCCTCCTAGGGTTACACAATTGCGAATTGTTGGAGATCTCAGAGAGGGTAATAAAGTTGCAATAAGTGCCATAGTCAGTGGTGGAATTGAAGGTACCAGCAGGGTGCAGTGGTTTAAAACAAATTCTCCTGATATTGGACCTGATGAAAGTAGCATGGAAGCCATAAGTACATCAAAAGTTGCAAAGGCATTTCGTATTCCACTTGGGGCTGTTGGCCACTATCTAGTAGCAAAGTACACTCCCGTGGCTTCAGATGGTGAAAGTGGTGAAGTGGCACTTGTCATTTCTGACAAGCGAGTGGAAACATTACCTCCAAGTTTGAACTTTCTTTCTATTACTGGTGATTTGACTGAAGGGGAAACATTGACAGCCTCTTATGGTTACATTGGAGGTCATGAAGGGAACAGTGATTACAGTTGGTATCTGCATGAGTATGAGAATGACCCAGGTACATTCATACCTGAAGCGGAGGGACAGCTCCAGTATCAAATAACAAAAGACGCTGCCTATAAATATGTATCTTTCAGTTGCATACCAGTTCGGGATGATGGTGTCATTGGGGAAGGACGGACTACCATCAGCCATGACCGTGTTCGACCAGGTTCTCCCAGGATACTATCCTTGCAGATACTAGGAGAATCAGTTGAAGGAGCAGAGTTACAGGCAGAGAAGAAATACTGGGGAGGTGATGAGGGGCCGTCAAAGCTACAATGGTTCTTGACTCGCCCAGATGGATCCCAACGCGAAATCAAGGGTGCTACTGGCATATCGTATACTGTTCGCAAAGAGGATATAGATGGTCTGATTTCAGTTTCATGTGAACCTATTCGTGTGGATGGAGCAAGAGGGCCCATTTTTCTTTCTCATTTGGTGGGACCTATCTTACCTGGCCCTCCTAGTTGTGAGTCACTCGAGTTGCATGGACAACCTGTAGAAGGAGGAAGACTTAGCTTTTCAGTAATTTATAAAGGAGGTGAAAGAGGATCTTGTATCCATGAGTGGATTCGGCAGAAAGGTAATGGTCGCATGGAAAAGATAAGCAATAACGAGGTTTTGGACTTGACGTGTGAAGATGTTGGCAGCCGCATTGAACTTGTTTTCACTCCTTGTAGAAAAGATGGTTTTAAAGGAACATCAAAGAAGGTTTTATCTGATGTCATTGCTGATGCGGAACCAGTGGGCATTGACCTAGTTATTCCAGATTGTTATGAAGACAAGGAAGTAGTTCCCCAGAAGTCCTACTATGGTGGAATAGAAGGTGGTGGGCAGTACACATGGTATCAGGTTACCCAGGAACTCACTGATATTGAGCTCTCGGATGCATGTGACAGTTTGAAAGATGCGAAGGTCCTTGCAACCTCCATGACATATATTCCAAAGTTGGAAGATGTGGGAGCTTATCTGGTAGTACGTTGGGTACCTGCTCGGAAGGATGGGAAGCTTGGAAAAGCTTTGATTGCAAGAAGCAGGTTGCCAGTTGCACCAGCTGCTCCAGCGGCACATAATGTTGTCATCAAGGAGTTGTCGCCTAGTGTGTATATTGGAGAAGGTGAATATTATGGTGGACTGGAGGGAAACAGCCAAATCAGCTGGTATAGAGAAACCGAGGAAGGAACGATGACTATGATCATTGGAGCAAACTCTAAATCTTATGAAGTTACTTATGATGATTACACATGTCGGTTATATTTTGGCTATCTGCCCATTCGATTGGATGGTGTTGTGGGGGAACTGTCTCTGTCAGAACCTAGCAATGTCATCCTTCCAGAGGTACCGAAAGTGCAGAAGCTTGTTCTAACAGGGAAGGCTGTGGAAGGAGAAATATTGACTGCTGTGGAGGTCATTCCAAAGAGTGAGTCACAACAAATAATTTGGGACAAGTACAAAAAGGATGTTAAACATCAATGGTTACGATCATCCGAGTCTGGTGCTGTGGAGACATTTGAACCCTTGCTTTTACAACGTTCATGCTCATATAAAGTTCGTCTAGAGGATGTTGGATGTTGTTTGCGGTGTGAATGTGTTGTAACAGATACATTTGGCAGGTCTGCTGAACCGGTCTCAGCAGTCACTGGCCCTGTTTCACCAGGGATGCCTAAAATAGATAAGCTGGAGATAGAAGGTAGAGGATATCATACAAATTTATATGCTGTTCGGGGTATTTACAGTGGAGGAAAGGAGGGGAAAAGTAAAATCCAGTGGCTGAGATCCATGGTCGGAAGTCCGGATCTAATTTCTATTCCTGGTGAAATAGGCCGCATGTACGAGGCAAATGTAGATGATGTTGGATATAGGCTTGTAGCTGTATACACACCTGTGAGGGAGGATGGTGTAGAAGGTATTCCGGTTTCGACATCGACAGACCAAATCACTGTTGAACCTGAAGTTTTGAAAGAAGTGAAGCAAAAGCTAGAACTTGGTGCAGTGAAGTTCGAGGCATTACGTGATCGAGACCGTTCACCAATGAAGTCACAGGTGCAAGGATTAGGAAGTTTGGAGAGACGCATCCTCGATGTCAATAGGAAACGCGTCAAGGTTGTCAAACCTGGGTCAAAGACTTCTTTTCCAAACACAGAGATTCGTGGCTCATATGCTCCTCCTTTCCATGTGGAGCTTTTCCGAAATGACCAGCATCGCTTGAAGATTGTAATTGATAGTGAAAATGAAGTGGATTTAATGGTACAGACACGACATATGCGTGATGTGATTGTTCTCGTCATAAGAGGGCTGGCACAAAGATTTAATAGTACTTCTTTGAACTCACTCTTGAAGATGTGATGCTTGACATGGTCACACTGCATTTGCTATTATTTGTTATCCTCATCATTTATTGTACATACATATGGGCTTGCACCTGCGTATTATTTCTTGTTAAGTCCTGCACGTGGAAGAAATATTTCGACGAGTGATCTTGTAATTAGTATGTGTTTTGGGAACACAGAATGAATGGTATTTAATAGTATAGCAAGTCTGTGTACCAATGGATTTTGTGCAGGTTTGCACATGGTTAATGTGCCCATTGTAAATTATTCTCAGTTTGTGAAAATAAACTTCCCATAGTATATGTATTCTTTTTCTAAGTAAAATATTGCATTAGCAGCAATTGAACATTGTAGACTAAATTCATACATAAACTTTATATTTACTTGCCATGTGGTCAGAGCTCGAAACTCTCAAGTACCGTAGAAGATTAGTTTGCACATCATCCATCATAT

Ace file of the UniGene sp_v2.0_unigene1504 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative leucine rich repeat protein [Oryza sativa Japonica Group]	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D7TKH0

Fln msg: W1: There is no M at the beginning, your sequence is longer than subject: 1752 - 1717

Fln protein: KCRKINRQTIQCCNEKSSNKQTSLKALHYSQNVLCIARVDGQIHSHDTRFTILAFHSFQNPKGHNNGNLPTDNVVRTGLTSVSGSKAAASANSHNRRNSIGTPFGIAERRVSTSSPATPRQRLSSTPSTPAKPSPSVTETRRASLSSVSTLAVASSSSAEQKKSSVPSASKFSSSSSLKSPSLAGSPKPFSPSTRSSPRPTENAVRHTAAAKPSVPSSRASLQSPSPSVGGRNKTASTLAETRPRTTKSLDGGNGILRNQASSLARAARHAPTSLSTDRISTLSNRRKSLTPDSKDSRFIALPQVEVKAGDDVRLDLRGQKVRSLDSNVLNLSPNLEFVYLRDNKLASLVGIEILKKVKVLDLSFNEFKGSGFEPLENCKGLQLLYLAGNQITSLTGIPELPNLEFLSVAQNKLKSLAMATQPRLQVLAASKNKISTLKGFPHLPVLEHLRLEENPILEMPHLEAVAILLVGPTLKKFNDRDLSVEEQKLAKCYPAHTALCIRDGWDFCGPEDAADSTMQFLIEQWRGHLPPGYLLKKASIDPPFEEDACRCHFVFVKDRNVYDEADLALRLQWFIGEKTPTNFEIIKGAVTEVYWPKHEEIDKFLKVECTPVLRGTEYPPIFAVSSPIAPGTGSPKVLNLRVEGELIEGNLIRGFAEIAWCGGTPSKGVASWLRRRRNSSPVVIVGAEEEEYRLTLDDVDSSLVFMYTPVTEEGTKGEPQYAMTDFVKAAFPSVRNVQVVGDLVEGKTIKGIGTYFGGKEGRSKFEWLREDKDLGEYMIVSRGDAEYTLTEEDVGQCMVFVYTPVNWEGQEGKPSTAVTGKVLHAPPRVTQLRIVGDLREGNKVAISAIVSGGIEGTSRVQWFKTNSPDIGPDESSMEAISTSKVAKAFRIPLGAVGHYLVAKYTPVASDGESGEVALVISDKRVETLPPSLNFLSITGDLTEGETLTASYGYIGGHEGNSDYSWYLHEYENDPGTFIPEAEGQLQYQITKDAAYKYVSFSCIPVRDDGVIGEGRTTISHDRVRPGSPRILSLQILGESVEGAELQAEKKYWGGDEGPSKLQWFLTRPDGSQREIKGATGISYTVRKEDIDGLISVSCEPIRVDGARGPIFLSHLVGPILPGPPSCESLELHGQPVEGGRLSFSVIYKGGERGSCIHEWIRQKGNGRMEKISNNEVLDLTCEDVGSRIELVFTPCRKDGFKGTSKKVLSDVIADAEPVGIDLVIPDCYEDKEVVPQKSYYGGIEGGGQYTWYQVTQELTDIELSDACDSLKDAKVLATSMTYIPKLEDVGAYLVVRWVPARKDGKLGKALIARSRLPVAPAAPAAHNVVIKELSPSVYIGEGEYYGGLEGNSQISWYRETEEGTMTMIIGANSKSYEVTYDDYTCRLYFGYLPIRLDGVVGELSLSEPSNVILPEVPKVQKLVLTGKAVEGEILTAVEVIPKSESQQIIWDKYKKDVKHQWLRSSESGAVETFEPLLLQRSCSYKVRLEDVGCCLRCECVVTDTFGRSAEPVSAVTGPVSPGMPKIDKLEIEGRGYHTNLYAVRGIYSGGKEGKSKIQWLRSMVGSPDLISIPGEIGRMYEANVDDVGYRLVAVYTPVREDGVEGIPVSTSTDQITVEPEVLKEVKQKLELGAVKFEALRDRDRSPMKSQVQGLGSLERRILDVNRKRVKVVKPGSKTSFPNTEIRGSYAPPFHVELFRNDQHRLKIVIDSENEVDLMVQTRHMRDVIVLVIRGLAQRFNSTSLNSLLKM*

Protein Length: 1753

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGAGGTGTCCAAGTCATCATATTTTGACAGTGAACAGTGGGCAGGGGTAGTGAGCGGTGTGGAGCGCAGTCCATTGTAGGGGCATGCAGGCGCTGTACATACATTGCTTTGTATTGAAATAAGCCCCTACTAATCCCACTATTTCAACCTGTAAATGCTTATATTGCCTTCGGCACAGTAGCGCAGTATCGGTAGATCATGGATCGATTTGCATTTTGCCCAAAAGGTCTCTACATTTGATGGAGGCATGGCATTTTGAGTTTCAGTGGTGGTTTACAGTTCTGAAGTAAGCCATTTGTAGAATTTTTAGCTTCATTTGCATTTTCAGGCTCCATTTCAAGGTTTTTTCAGCTTAAGTAGCTGTTTCAATCGACGGATTGATGTTTTGCGTCATTCAACCAGGAGTTTGAGCTTCAATAGAAAGCACTCACTGCATTTGTGCCCGAGAAGCTCCGACAAAAGTCTGTTTTGAGCTTTGATCGTGATTTCAGGTTCAAACAAGGTATTTGCAGCATCTTTATGTACAGCATTGTGAGCTTCACTCGAAATTATTTTGGATCTTTACAGAATGAGAAGGAATTAGAAACTTTATTCTAGGTTTTCCGCGCCCGTACTGTCCCAAAAATGGAAGAAGAAAACGGTTCTGGTTTTCTTTACGCGAAAGAGCCAACAGCAGAGAATGGCGACAAAGAGAAGCACGATTTACCTATCGATCAGACGGCAGAAGACGAGACTGCGAGTTCGGTAGTTGAAA_-_ATGCAGGAAAATTAACCGGCAAACCATCCAATGCTGCAACGAAAAGTCTTCGAACAAGCAAACCAGTCTCAAAGCTCTCCACTACAGCCAAAACGTCCTCTGCATTGCGAGGGTCGACGGTCAGATCCACTCCCACGACACCAGGTTCACGATCCTTGCCTTCCACAGCTTCCAGAACCCGAAGGGTCATAACAATGGCAATTTACCAACTGATAACGTCGTTCGGACGGGCCTTACGAGTGTTTCAGGCTCCAAGGCTGCTGCTAGTGCCAATTCTCACAATAGACGGAACAGCATTGGGACGCCCTTTGGAATTGCAGAGCGACGGGTGAGCACTAGCTCTCCTGCCACTCCGCGGCAGCGACTTTCGTCGACGCCATCAACTCCTGCAAAGCCGAGTCCTTCAGTTACTGAAACCCGCCGAGCTTCTCTTTCAAGCGTGTCTACCTTGGCTGTTGCCAGTTCAAGTTCTGCAGAGCAGAAGAAATCCTCGGTTCCGTCGGCTTCGAAATTTTCTTCATCTTCTTCTTTAAAATCTCCGTCTCTCGCCGGATCTCCCAAGCCGTTCAGTCCATCTACGCGATCGTCTCCCAGACCGACCGAAAATGCCGTACGCCACACGGCAGCGGCGAAACCATCTGTTCCTTCCTCCCGGGCGTCGCTGCAATCTCCGAGTCCGTCTGTCGGTGGAAGAAATAAAACGGCCTCTACACTGGCGGAGACTAGACCGCGAACCACCAAGTCTTTGGATGGTGGAAATGGCATTTTGAGAAATCAGGCCTCGTCGTTGGCAAGAGCTGCGAGACATGCGCCCACGTCTCTGTCAACAGACAGAATTTCGACGCTTTCGAATCGCAGGAAATCATTAACTCCTGACAGTAAAGATTCCCGATTCATCGCCCTTCCACAAGTTGAAGTTAAAGCAGGAGATGACGTGAGGTTAGATCTCCGAGGCCAGAAAGTTCGCAGCCTTGATTCCAACGTCCTAAATTTATCCCCAAATTTAGAGTTTGTTTATCTCAGGGATAATAAGTTGGCGTCATTGGTTGGCATTGAGATTCTGAAGAAGGTGAAGGTTTTGGATCTCAGCTTTAACGAGTTTAAAGGATCTGGTTTTGAGCCGCTAGAAAATTGTAAAGGTCTTCAGCTATTGTACTTGGCAGGGAATCAGATTACATCACTTACTGGGATTCCTGAACTTCCGAATTTAGAGTTTCTTTCAGTTGCTCAGAACAAATTAAAGTCTCTTGCAATGGCAACTCAGCCTCGGCTTCAGGTCTTGGCAGCGAGCAAAAATAAAATATCAACTTTGAAGGGTTTTCCACATTTGCCAGTTCTCGAGCATCTGCGGTTGGAGGAGAATCCTATTTTGGAGATGCCTCACTTGGAAGCAGTGGCTATCTTGTTGGTTGGACCAACACTTAAGAAGTTCAATGACCGAGATCTCTCTGTTGAAGAGCAGAAGCTTGCAAAATGTTATCCTGCTCACACAGCTTTATGCATCAGAGATGGCTGGGACTTCTGTGGTCCTGAAGACGCTGCTGATTCAACAATGCAGTTTCTTATCGAACAATGGAGAGGTCACTTGCCACCAGGGTACCTGCTAAAGAAAGCCTCTATTGATCCACCATTTGAGGAAGATGCCTGCCGTTGCCATTTTGTTTTTGTAAAGGACCGTAATGTGTATGATGAAGCTGATTTGGCTTTAAGATTGCAGTGGTTTATAGGAGAAAAGACACCAACAAACTTTGAGATCATTAAAGGTGCTGTGACTGAGGTGTACTGGCCAAAGCATGAAGAGATCGACAAATTCTTGAAGGTGGAGTGCACTCCAGTTTTGAGGGGGACTGAGTATCCACCCATTTTTGCTGTATCTTCGCCCATTGCTCCTGGAACTGGAAGTCCTAAAGTGCTGAATCTAAGAGTCGAGGGTGAACTTATTGAAGGCAATTTGATTAGAGGGTTTGCTGAAATTGCTTGGTGTGGTGGAACTCCTAGTAAAGGTGTAGCAAGTTGGCTAAGACGGCGACGGAACAGTAGTCCTGTTGTCATTGTCGGGGCCGAAGAAGAAGAATATCGGTTGACATTGGATGATGTTGATTCTAGTCTTGTGTTTATGTACACACCTGTTACAGAGGAAGGTACCAAAGGAGAACCACAATATGCCATGACAGATTTTGTTAAAGCAGCTTTTCCTTCTGTCAGAAATGTGCAGGTTGTTGGAGATCTTGTGGAGGGTAAGACAATTAAAGGAATTGGCACATACTTTGGAGGAAAAGAAGGCCGGAGCAAATTTGAATGGTTACGGGAGGATAAGGACTTAGGGGAGTACATGATTGTGTCAAGAGGAGATGCAGAATATACTTTGACTGAGGAGGATGTGGGTCAATGTATGGTGTTTGTTTATACACCAGTCAACTGGGAGGGTCAGGAAGGCAAACCTTCTACTGCTGTTACGGGGAAAGTATTGCATGCTCCTCCTAGGGTTACACAATTGCGAATTGTTGGAGATCTCAGAGAGGGTAATAAAGTTGCAATAAGTGCCATAGTCAGTGGTGGAATTGAAGGTACCAGCAGGGTGCAGTGGTTTAAAACAAATTCTCCTGATATTGGACCTGATGAAAGTAGCATGGAAGCCATAAGTACATCAAAAGTTGCAAAGGCATTTCGTATTCCACTTGGGGCTGTTGGCCACTATCTAGTAGCAAAGTACACTCCCGTGGCTTCAGATGGTGAAAGTGGTGAAGTGGCACTTGTCATTTCTGACAAGCGAGTGGAAACATTACCTCCAAGTTTGAACTTTCTTTCTATTACTGGTGATTTGACTGAAGGGGAAACATTGACAGCCTCTTATGGTTACATTGGAGGTCATGAAGGGAACAGTGATTACAGTTGGTATCTGCATGAGTATGAGAATGACCCAGGTACATTCATACCTGAAGCGGAGGGACAGCTCCAGTATCAAATAACAAAAGACGCTGCCTATAAATATGTATCTTTCAGTTGCATACCAGTTCGGGATGATGGTGTCATTGGGGAAGGACGGACTACCATCAGCCATGACCGTGTTCGACCAGGTTCTCCCAGGATACTATCCTTGCAGATACTAGGAGAATCAGTTGAAGGAGCAGAGTTACAGGCAGAGAAGAAATACTGGGGAGGTGATGAGGGGCCGTCAAAGCTACAATGGTTCTTGACTCGCCCAGATGGATCCCAACGCGAAATCAAGGGTGCTACTGGCATATCGTATACTGTTCGCAAAGAGGATATAGATGGTCTGATTTCAGTTTCATGTGAACCTATTCGTGTGGATGGAGCAAGAGGGCCCATTTTTCTTTCTCATTTGGTGGGACCTATCTTACCTGGCCCTCCTAGTTGTGAGTCACTCGAGTTGCATGGACAACCTGTAGAAGGAGGAAGACTTAGCTTTTCAGTAATTTATAAAGGAGGTGAAAGAGGATCTTGTATCCATGAGTGGATTCGGCAGAAAGGTAATGGTCGCATGGAAAAGATAAGCAATAACGAGGTTTTGGACTTGACGTGTGAAGATGTTGGCAGCCGCATTGAACTTGTTTTCACTCCTTGTAGAAAAGATGGTTTTAAAGGAACATCAAAGAAGGTTTTATCTGATGTCATTGCTGATGCGGAACCAGTGGGCATTGACCTAGTTATTCCAGATTGTTATGAAGACAAGGAAGTAGTTCCCCAGAAGTCCTACTATGGTGGAATAGAAGGTGGTGGGCAGTACACATGGTATCAGGTTACCCAGGAACTCACTGATATTGAGCTCTCGGATGCATGTGACAGTTTGAAAGATGCGAAGGTCCTTGCAACCTCCATGACATATATTCCAAAGTTGGAAGATGTGGGAGCTTATCTGGTAGTACGTTGGGTACCTGCTCGGAAGGATGGGAAGCTTGGAAAAGCTTTGATTGCAAGAAGCAGGTTGCCAGTTGCACCAGCTGCTCCAGCGGCACATAATGTTGTCATCAAGGAGTTGTCGCCTAGTGTGTATATTGGAGAAGGTGAATATTATGGTGGACTGGAGGGAAACAGCCAAATCAGCTGGTATAGAGAAACCGAGGAAGGAACGATGACTATGATCATTGGAGCAAACTCTAAATCTTATGAAGTTACTTATGATGATTACACATGTCGGTTATATTTTGGCTATCTGCCCATTCGATTGGATGGTGTTGTGGGGGAACTGTCTCTGTCAGAACCTAGCAATGTCATCCTTCCAGAGGTACCGAAAGTGCAGAAGCTTGTTCTAACAGGGAAGGCTGTGGAAGGAGAAATATTGACTGCTGTGGAGGTCATTCCAAAGAGTGAGTCACAACAAATAATTTGGGACAAGTACAAAAAGGATGTTAAACATCAATGGTTACGATCATCCGAGTCTGGTGCTGTGGAGACATTTGAACCCTTGCTTTTACAACGTTCATGCTCATATAAAGTTCGTCTAGAGGATGTTGGATGTTGTTTGCGGTGTGAATGTGTTGTAACAGATACATTTGGCAGGTCTGCTGAACCGGTCTCAGCAGTCACTGGCCCTGTTTCACCAGGGATGCCTAAAATAGATAAGCTGGAGATAGAAGGTAGAGGATATCATACAAATTTATATGCTGTTCGGGGTATTTACAGTGGAGGAAAGGAGGGGAAAAGTAAAATCCAGTGGCTGAGATCCATGGTCGGAAGTCCGGATCTAATTTCTATTCCTGGTGAAATAGGCCGCATGTACGAGGCAAATGTAGATGATGTTGGATATAGGCTTGTAGCTGTATACACACCTGTGAGGGAGGATGGTGTAGAAGGTATTCCGGTTTCGACATCGACAGACCAAATCACTGTTGAACCTGAAGTTTTGAAAGAAGTGAAGCAAAAGCTAGAACTTGGTGCAGTGAAGTTCGAGGCATTACGTGATCGAGACCGTTCACCAATGAAGTCACAGGTGCAAGGATTAGGAAGTTTGGAGAGACGCATCCTCGATGTCAATAGGAAACGCGTCAAGGTTGTCAAACCTGGGTCAAAGACTTCTTTTCCAAACACAGAGATTCGTGGCTCATATGCTCCTCCTTTCCATGTGGAGCTTTTCCGAAATGACCAGCATCGCTTGAAGATTGTAATTGATAGTGAAAATGAAGTGGATTTAATGGTACAGACACGACATATGCGTGATGTGATTGTTCTCGTCATAAGAGGGCTGGCACAAAGATTTAATAGTACTTCTTTGAACTCACTCTTGAAGATGTGATGCTTGACATGGTCACACTGCATTTGCTATTATTTGTTATCCTCATCATTTATTGTACATACATATGGGCTTGCACCTGCGTATTATTTCTTGTTAAGTCCTGCACGTGGAAGAAATATTTCGACGAGTGATCTTGTAATTAGTATGTGTTTTGGGAACACAGAATGAATGGTATTTAATAGTATAGCAAGTCTGTGTACCAATGGATTTTGTGCAGGTTTGCACATGGTTAATGTGCCCATTGTAAATTATTCTCAGTTTGTGAAAATAAACTTCCCATAGTATATGTATTCTTTTTCTAAGTAAAATATTGCATTAGCAGCAATTGAACATTGTAGACTAAATTCATACATAAACTTTATATTTACTTGCCATGTGGTCAGAGCTCGAAACTCTCAAGTACCGTAGAAGATTAGTTTGCACATCATCCATCATAT

Fln Alignment:

Contig1504___KTASTLAETRPRTTKSLDG-GNGILRNQASSLARAARHAPT----------SLSTDRISTLSNRRKSLTPDSKDSRFIALPQVEVKAGDDVRLDLRGQKVRSLDSNVLNLSPNLEFVYLRDNKLASLVGIEILKKVKVLDLSFNEFKGSGFEPLENCKGLQLLYLAGNQITSLTGIPELPNLEFLSVAQNKLKSLAMATQPRLQVLAASKNKISTLKGFPHLPVLEHLRLEENPILEMPHLEAVAILLVGPTLKKFNDRDLSVEEQKLAKCYPAHTALCIRDGWDFCGPEDAADSTMQFLIEQWRGHLPPGYLLKKASIDPPFEEDACRCHFVFVKDRNVYDEADLALRLQWFIGEKTPTNFEIIKGAVTEVYWPKHEEIDKFLKVECTPVLRGTEYPPIFAVSSPIAPGTGSPKVLNLRVEGELIEGNLIRGFAEIAWCGGTPSKGVASWLRRRRNSSPVVIVGAEEEEYRLTLDDVDSSLVFMYTPVTEEGTKGEPQYAMTDFVKAAFPSVRNVQVVGDLVEGKTIKGIGTYFGGKEGRSKFEWLREDKDLGEYMIVSRGDAEYTLTEEDVGQCMVFVYTPVNWEGQEGKPSTAVTGKVLHAPPRVTQLRIVGDLREGNKVAISAIVSGGIEGTSRVQWFKTNSPDIGPDESSMEAISTSKVAKAFRIPLGAVGHYLVAKYTPVASDGESGEVALVISDKRVETLPPSLNFLSITGDLTEGETLTASYGYIGGHEGNSDYSWYLHEYENDPGTFIPEAEGQLQYQITKDAAYKYVSFSCIPVRDDGVIGEGRTTISHDRVRPGSPRILSLQILGESVEGAELQAEKKYWGGDEGPSKLQWFLTRPDGSQREIKGATGISYTVRKEDIDGLISVSCEPIRVDGARGPIFLSHLVGPILPGPPSCESLELHGQPVEGGRLSFSVIYKGGERGSCIHEWIRQKGNGRMEKISNNEVLDLTCEDVGSRIELVFTPCRKDGFKGTSKKVLSDVIADAEPVGIDLVIPDCYEDKEVVPQKSYYGGIEGGGQYTWYQVTQELTDIELSDACDSLKDAKVLATSMTYIPKLEDVGAYLVVRWVPARKDGKLGKALIARSRLPVXXXXXXAHNVVIKELSPSVXXXXXXXXXXXXGNSQISWYRETEEGTMTMIIGANSKSYEVTYDDYTCRLYFGYLPIRLDGVVGELSLSEPSNVILPEVPKVQKLVLTGKAVEGEILTAVEVIPKSESQQIIWDKYKKDVKHQWLRSSESGAVETFEPLLLQRSCSYKVRLEDVGCCLRCECVVTDTFGRSAEPVSAVTGPVSPGMPKIDKLEIEGRGYHTNLYAVRGIYSGGKEGKSKIQWLRSMVGSPDLISIPGEIGRMYEANVDDVGYRLVAVYTPVREDGVEGIPVSTSTDQITVEPEVLKEVKQKLELGAVKFEALRDRDRSPMKSQVQGLGSLERRILDVNRKRVKVVKPGSKTSFPNTEIRGSYAPPFHVELFRNDQHRLKIVIDSENEVDLMVQTRHMRDVIVLVIRGLAQRFNSTSLNSLLKM
D7TKH0______________KSASSISSSSKRVTSSLDSSGSSTFRKVSSKLSSPSARSPAISSGSKVGSLSSSMDRSSSFSGRRKAATPESRDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLNASGLNLSPNLEFVYLRDNLLSTLEGVEILKRVKVLDLSFNDFKGPGFEPLENCKALQQLYLAGNQITSLISLPLLPNLEFLSVAQNKLKSLSMASQPRLQVLAASKNKISTLKGFPYLPVLEHLRVEENPILQMSHLEAASILLVGPTLKKFNDRDLSREEVAIAKHYPAHTALCIRDGWEFCRPEHAIDSTFRFLVEQWKDDLPLGYLIKETSIDQPFEEDACQCHFIFVKDGTSSICSNLVLKFQWFIGERSLSNFTAIPEAIEQVYWPKHEDIGKILKVECTPILGEIEHRSIFAISLPVSPGTGCPKVVSLDVHGELVEGNIIKGYAKVAWCGGTPGKGVASWLRRRWNGSPVAIVGAEDEEYQLTIEDIDSSLVFMYTPVTEEGVKGEAQYKHTDFVKAAPPSVNNVRIIGVPVEGNTIKGVGDYFGGREGPSKFDWLRENLEAGDFVLVSSGTAEYTLTKEDVGRRLAFVYVPMNFEGQEGESVSVVSETIKQAPPKVTNVKIIGDVRENNKVTVTGVVTGGSEGSSRVQWFKTHS-SVLDGENGLEAVSTSKIAKAFRIPLGAVGYYIVAKFTPMAADGESGEPAYVISEKAVETLPPSLNFLSITGDYIEDGILTASYGYIGGHEGKSIYNWYLHEVESDFGTLIPEVSGFLQYRISKDAIGKFVSFQCTPMRDDGIVGEPRTCLGQERVRPGSPRLLSLQIVGTAVEGTSLSVDKKYWGGEEGNSVFRWFRMSSDGTQIEVNDASTASYKLSVDDIGFFVSVSCEPVRRDWARGPIVLSEQIGPIIAGPPTCPSLEFLGSMMEGQSLSFVASYSGGEKGNCFHEWFRLKSNGSKEKLKADEFLNLTIEDVGKVIELVYTPVRNDGIRGNPRSVISEVIAPGEPTGLELIIPDCCEDKDVVPQKTYFGGQEGVGEYIWYRTKNKLDSSSLMDISDTCDGVVTCGKTLTYTPSLEDVGAYMALYWLPTRADGKCGKPLVSICNSPVNPALPIVSNVRVKKLSSVIYCGEGEYFGGYEGSSLFSWYRETTDGTIILINGANSSTYEVTDSDYNCRLLFGYTPVRSDSIVGELRLSEPTEIIFPELPKVEMLALTGKAMEGDILTAVEVIPETETQQHVWSKYKKDVKYQWFCSTEMGDNKSFEPLPLQRSCSYKVRLEDIGCCLRCECIVTDVFGRSSDLAYAESAPVSPGIPRIDKLEIEGRGFHTNLYAVRGIYSGGKEGKSRIQWLRSMVGSPDLISIPGEIGRMYEANVDDVGYRLVAIYTPIREDGVEGQPVSASTDPIAVEPDVFKEVKQKLDLGSVKFEALCDKDRSPKKA--PGVGSFERRILEVNRKRVKVVKPGSKTSFPTTEIRGSYAPPFHVELFRNDQHRLRIVVDSENEVDLMVHSRHLRDVIVLVIRGLAQRFNSTSLNSLLKI

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
2916		66		33	1.0
2985	16			83	0.994512
2987		83		16	0.994512
2988		50		50	1.0
2990		83	16		0.994512
3159	75	25			1.0
3160	75	25			1.0
3161	25	75			1.0
3348		14		85	0.993533
3349		14	85		0.993533
3353		85		14	0.993533
3394		20		80	0.995493
3578	75		25		1.0
3831			85	14	0.993533
3838		14		85	0.993533
3840		85	14		0.993533
3841		14		85	0.993533
3847	14	85			0.993533
3849		85	14		0.993533
3851			14	85	0.993533
4057	33			66	0.997452
4885		75	25		0.996473
4898		50	50		1.0
4992		20	80		0.995493
4995	20		80		0.995493
4996	20			80	0.995493
4998	20			80	0.995493
5180	66		33		0.997452
5181			66	33	0.997452
5182	66		33		0.997452
5184	66	33			0.997452
5186			33	66	0.997452
5187		33		66	0.997452
5190	33		66		0.997452
5192	66		33		0.997452
6011	33		66		1.0
6156	71		28		1.0
6185	90		10		0.90298
6223	90		10		0.90298
6245	83	16			0.999991
6330		11	88		0.923564
6331		11	88		0.923564
6333	11			88	0.923564
6341	85		14		0.993533
6345	85	14			0.993533
6353		14	85		0.993533
6354	14	14		71	0.984337
6355	71	14	14		0.984337
6356		14		85	0.993533
6357	14		85		0.993533
6364		16	83		0.994512
6365	16	83			0.994512
6366	16	83			0.994512
6367			16	83	0.994512
6371		16		83	0.994512
6373	16	83			0.994512
6375		83	16		0.994512
6393		60	40		1.0
6394		60	40		1.0
6395	50	50			1.0
6396		75	25		0.996473
6397	50		50		1.0
6398		50		50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
3618	3629	TTC TTC TTC TTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain