SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1489

Length: 1164 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1489 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RXN8_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	cdp-diacylglycerol--glycerol-3-phosphate 3-	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	76%
Blast2go	Malonyl-CoA decarboxylase.	EC:4.1.1.9	-	0.0	76%

Source	KEGGs	Term	Identity
Blast2go	beta-Alanine metabolism	00410	76%
Blast2go	Propanoate metabolism	00640	76%
Blast2go	Metabolic pathways	01100	76%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	76%
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	76%
Blast2go	cell wall macromolecule catabolic process	GO:0016998	Biological Process	76%
Blast2go	phospholipid biosynthetic process	GO:0008654	Biological Process	76%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	76%
Blast2go	cardiolipin synthase activity	GO:0008808	Molecular Function	76%
Blast2go	ATP binding	GO:0005524	Molecular Function	76%
Blast2go	malonyl-CoA decarboxylase activity	GO:0050080	Molecular Function	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%
Blast2go	membrane	GO:0016020	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	CDP-alcohol phosphatidyltransferase	IPR000462	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Malonyl-CoA decarboxylase	IPR007956	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKQ0

Fln msg: your sequence is shorter than subject: 223 - 401

Fln protein: RRDLGCHSVFVNLPNAISISRMVAGPLLGWMILNELYFPAFVGLVFAGASDWLDGYVARKMKINSVLGSYLDPLADKVLIISVALSMIKSDLLSPSLVALVVARDCALVGGAFYKRADSMGWEWKDWRDFFNVENNGAEKVEPLFISKVNTVLQLALVGLALLQPEIGTDDSLTLVTWLSWLVAATTLASWAGYGRLYLQRGSQTALRSRRIMSSRKGQDSR*

Protein Length: 224

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTTGTGAATTTGCCCAATGCCATCTCCATATCCCGGATGGTGGCTGGTCCATTGCTTGGATGGATGATTCTAAATGAATTGTATTTTCCAGCTTTTGTGGGATTGGTATTCGCTGGAGCTAGTGATTGGCTTGATGGTTATGTGGCTCGCAAAATGAAGATAAACAGTGTGTTAGGATCATATCTTGATCCTCTTGCTGATAAGGTTCTGATTATCTCTGTTGCGTTGTCAATGATTAAGAGTGATCTTCTATCTCCTTCTCTTGTTGCTTTGGTTGTGGCAAGAGATTGTGCACTTGTGGGAGGTGCATTCTATAAAAGAGCTGATTCTATGGGTTGGGAATGGAAAGATTGGAGGGATTTCTTTAATGTGGAGAACAATGGTGCAGAAAAAGTTGAGCCTCTCTTCATCAGCAAGGTTAACACAGTTTTGCAGCTAGCCTTGGTTGGCCTAGCTCTACTTCAGCCTGAAATAGGAACAGATGATTCACTCACTCTGGTGACATGGTTAAGTTGGTTGGTGGCAGCAACAACATTAGCATCATGGGCAGGTTATGGACGGTTATACTTACAGAGAGGTTCTCAAACAGCTCTAAGAAGTCGAAGAATAATGTCTAGCCGCAAGGGCCAAGATAGTCGATAG___TCATCTCTGGTGTCGGAAGAAGAGTCGAACAGGTGCTCTTTTGCAAGATTTTTCTGTTTCCATTTCCGACTACAATATCCCTTTAAAATGTTGGGTTTGTGGAAGTACTCATTGAAAATACAAGGGAGCAATGAATGCTTCTCTTACGAAAATTGCCTATGGTGTAAAATCTGTAAAATATAGAAAATTAATCTTGTCATTTCACGTCGAACCTCCTTTTAACATACACTGATATGCACCAATCAAATTTTCCATTGTCACTGAATATTTACCCTGGGAAAAAAATGAAGCTTGAGGAATAAAGTTCCCTTCCAAAGGGCTAGTTGCATTGTGAAGACAACTCTGTGACGAGGCTACTGGCATTAATGCTTTATCACTTGAAATGGTTTAATCTTCCAGAAAAATGCAGCTTTCAAGTGAGTGATGCATGATTATGTTGAATGCTCCAGTTTGAACTCTTTTTTAATCAGTGAGCTTATTGGCAACTATTTGCTT

Fln Alignment:

Contig1489___FVNLPNAISISRMVAGPLLGWMILNELYFPAFVGLVFAGASDWLDGYVARKMKINSVLGSYLDPLADKVLIISVALSMIKSDXXXXXXXXXXXARDCALVGGAFYKRADSMGWEWKDWRDFFNVENNGAEKVEPLFISKVNTXXXXXXXXXXXXQPEIGTDDSLTLVTWLSWLVAATTLASWAGYGRLYLQRGSQTALRSRRIMSSRKGQD
B8LKQ0______________FVNLPNAISISRMMAGPLLGWMILNELYFPAFVGLVFAGATDWLDGYVARKMKINSVLGSYLDPLADKVLIISVALSMIKSDLLSPALVALVVARDCALMGGAFYKRADSMGWEWKDWRDFFNVENDGAEKIEPLFISKVNTVLQLALVGLALLQPEIGTDDSLTVLTWLSWLVAATTLASWAGYGLLYFQKGSQTALRSPRIMSTSKVQD

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
572			12	87	0.992554
574	12			87	0.992554
575	87		12		0.992554
600		87		12	0.992554
653			11	88	0.923564
655	88	11			0.923564
656	11			88	0.923564
657	11	88			0.923564
658			11	88	0.923564
661		11		88	0.923564
662	11	88			0.923564
664			11	88	0.923564
666		11		88	0.923564
667			11	88	0.923564
788			10	90	0.90298
789		90	10		0.90298
791		10		90	0.90298
792	10			90	0.90298
794		90	10		0.90298
796		10		90	0.90298
797			10	90	0.90298
819	6			80	0.999961
846		84	15		0.999986
847	85			14	0.999981
848		85	14		0.999981
851			14	85	0.999981
853		14		85	0.999981
854	14	85			0.999981
855	14			85	0.999981
856			14	85	0.999981
858		85		14	0.999981
862	86		13		0.999973
865		86	13		0.999973

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain