SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1475

Length: 2134 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1475
CTTCTTCTCATCCACTCCAGCATGAGGAAAATAGGCAAACCACCATTCTTACAACCACCATGTGCATCAGAGGCCTGGTAATAACGGTATTGCACAGCAATTGAGTTTGAGTTCGGATTCTCCACGGCCGCCGTCTCTGTCTGTTTCGCCGCCTTCCAAGCGGACAATATCTCCCCCGGGAATAATTAGCAAGCAGCAGCAGCCGCCGCCTGTAAATGTCAATGTGAACGGCGTGCCGAGGGAACAGCAGACGTTTGAAGATTATGATGAAGGGTTTGACGAGGGGGACAGGAGCGGCAGCGGAGGGAACGGCAGGTGGCCGAGGCAGGAAACGCTCACGCTCTTAAAGATTAGATCAGAAATGGATTCTAAGTTCCGCGAGGCCACCCACAAAGGTCCCTTATGGGACGAAGTCTCAAGGGCTCTTGCGGAGCACGGTTACCAGAGAAGTTCCAAGAAGTGCCGGGAGAAATTCGAGAATCTTTACAAATACTACAAGAAAACAAAAGAAGGCAAAGCAGGAAGGCAAGACGGAAAGCATTACCGTTTCTTTAGCCAGCTCGAAGCTTTGTACGGAGGAACAACTATTGATGCTGCCGACAGTTGTTTTGGCGTAACAACACGGACAAATTTAACCGAAAGTCCAGGCCTGGACTTTAACGGAGACGGAGCCTCGCAGAAATACGCTGACACTCACCACAACAGCGAGGGCTTTAGTTTGTCTTCGGATTCTTCTTCGGATGACGAGTACAGTCACGATATACAGGAGAATCACATAATTAGCCGAGGAAAAAGGAAACGAAAGAGCTGGAAATCGAAGATGAAGATGTACTTCGACGCGCAAATGAAGAAATTCATGGACAGGCAAGAAGCCTGGCTCCAGAAAGTTCTAGATACATTAGAACAAAGAGAGCAAGAAAGAGTTAGCAGAGAAGAAGCATGGAGACGTCAAGAAGCGGCTCGGTTGGAACGCGAGCACCAGCTCTGGTCCAACGAACGAGCCCGTGCGGCGACCTGCGATGCGGCATTTATTTCCGCTCTGCAGAAAATCACCGGGCAAAATCTACAGCTCCCGGAAATATTCACACTGCCGCCTCCTCAGAATAGCATGAATCCTGAAGCTCAGGACCAGCAGGACTTGGTTAACAGAGAAAAAGAAACTTACGATCCGAACAACAAACGATGGCCGAAACCTGAAATTATGAGCTTAATCCGCCTGCGTACGAACATGGAACGCAGGTTTCAAGAAGCCGGCGCCAAGGGCCCCCTTTGGGAAGAGATCGCCTCAAACATGTCTCGTCTAGGATACGACCGTAGTGCCAAGAGATGCAAGGAAAAGTGGGAGAACATAAACAAATATTTCAGAAAAGCCAAGGACAGTAACAGAAAGAGGCCTGAGAATTCCAAGACCTGCCCTTATTTTCAACAACTTGATTCACTCTACCGTCAGGGAGCTCTGGGATTCTCAAACGGCGGAAGCAGTACCACTGCCACGTCCACTAGTACGAAACTATCAAACCCGCCGGACGGCGTTCATGACCAGACCACGACTGACGAACTCGTATTGCAACCCTGCACAAGTAGTCACGAGAACAATGAGCACCGAGAGGCTGTGGAGATCTTAGGACAGCTCATGCCATCATCTGAAGGCGGTTGTACTCACAATAATATCAACAATGATAATAACAATAATGGCAGTAACGGCCACCCAACACCCGGAGCTTCTTCCAATAATAATAACTGCGTGCAGTTCTTCTCGGGGGCAGTAGAAAATGGATGCAATTGGGAGGGCTATCCAATGAAGCTCAAAATCAAGCAGCAGCAGCAACAGCATTAAAGTACCACTCTGCCAGGCGTGCGGAAACAACAGCCATCGCCATTAAACCACTCTGTGAGACTTGCATACATTCTAGCTATCTATTTTTTTGCTTAATGTATTTTCCATTGCTCGCTGCAATATCATTTGTGTTTCTTTATTTCTTTTTGAGAATTATCTTGGACGAAGTAATTTGCTCGCAGTCGGAGCAAATATATTTAGGAAGTAGGAAGTAGATGATGAAATATAGCAATATAATGCATGTGTACTTAAGTCCTTCGTTTTGTATTATTCCCAATGAATTAGTCATTATCCTTC

Ace file of the UniGene sp_v2.0_unigene1475 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	trihelix DNA binding transcription factor [Arabidopsis thaliana] emb\|CAB82933.1\| GT2-like protein [Arabidopsis thaliana] gb\|AED90641.1\| trihelix DNA binding transcription factor [Arabidopsis thaliana]	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	Protein of unknown function DUF810	IPR008528	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRE1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is longer than subject: 612 - 378

Fln protein: FFSSTPA*GK*ANHHSYNHHVHQRPGNNGIAQQLSLSSDSPRPPSLSVSPPSKRTISPPGIISKQQQPPPVNVNVNGVPREQQTFEDYDEGFDEGDRSGSGGNGRWPRQETLTLLKIRSEMDSKFREATHKGPLWDEVSRALAEHGYQRSSKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFSQLEALYGGTTIDAADSCFGVTTRTNLTESPGLDFNGDGASQKYADTHHNSEGFSLSSDSSSDDEYSHDIQENHIISRGKRKRKSWKSKMKMYFDAQMKKFMDRQEAWLQKVLDTLEQREQERVSREEAWRRQEAARLEREHQLWSNERARAATCDAAFISALQKITGQNLQLPEIFTLPPPQNSMNPEAQDQQDLVNREKETYDPNNKRWPKPEIMSLIRLRTNMERRFQEAGAKGPLWEEIASNMSRLGYDRSAKRCKEKWENINKYFRKAKDSNRKRPENSKTCPYFQQLDSLYRQGALGFSNGGSSTTATSTSTKLSNPPDGVHDQTTTDELVLQPCTSSHENNEHREAVEILGQLMPSSEGGCTHNNINNDNNNNGSNGHPTPGASSNNNNCVQFFSGAVENGCNWEGYPMKLKIKQQQQQH*

Protein Length: 613

Fln nts: CTTCTTCTCATCCACTCCAGCATGAGGAAAATAGGCAAACCACCATTCTTACAACCACCATGTGCATCAGAGGCCTGGTAATAACGGTATTGCACAGCAATTGAGTTTGAGTTCGGATTCTCCACGGCCGCCGTCTCTGTCTGTTTCGCCGCCTTCCAAGCGGACAATATCTCCCCCGGGAATAATTAGCAAGCAGCAGCAGCCGCCGCCTGTAAATGTCAATGTGAACGGCGTGCCGAGGGAACAGCAGACGTTTGAAGATTATGATGAAGGGTTTGACGAGGGGGACAGGAGCGGCAGCGGAGGGAACGGCAGGTGGCCGAGGCAGGAAACGCTCACGCTCTTAAAGATTAGATCAGAAATGGATTCTAAGTTCCGCGAGGCCACCCACAAAGGTCCCTTATGGGACGAAGTCTCAAGGGCTCTTGCGGAGCACGGTTACCAGAGAAGTTCCAAGAAGTGCCGGGAGAAATTCGAGAATCTTTACAAATACTACAAGAAAACAAAAGAAGGCAAAGCAGGAAGGCAAGACGGAAAGCATTACCGTTTCTTTAGCCAGCTCGAAGCTTTGTACGGAGGAACAACTATTGATGCTGCCGACAGTTGTTTTGGCGTAACAACACGGACAAATTTAACCGAAAGTCCAGGCCTGGACTTTAACGGAGACGGAGCCTCGCAGAAATACGCTGACACTCACCACAACAGCGAGGGCTTTAGTTTGTCTTCGGATTCTTCTTCGGATGACGAGTACAGTCACGATATACAGGAGAATCACATAATTAGCCGAGGAAAAAGGAAACGAAAGAGCTGGAAATCGAAGATGAAGATGTACTTCGACGCGCAAATGAAGAAATTCATGGACAGGCAAGAAGCCTGGCTCCAGAAAGTTCTAGATACATTAGAACAAAGAGAGCAAGAAAGAGTTAGCAGAGAAGAAGCATGGAGACGTCAAGAAGCGGCTCGGTTGGAACGCGAGCACCAGCTCTGGTCCAACGAACGAGCCCGTGCGGCGACCTGCGATGCGGCATTTATTTCCGCTCTGCAGAAAATCACCGGGCAAAATCTACAGCTCCCGGAAATATTCACACTGCCGCCTCCTCAGAATAGCATGAATCCTGAAGCTCAGGACCAGCAGGACTTGGTTAACAGAGAAAAAGAAACTTACGATCCGAACAACAAACGATGGCCGAAACCTGAAATTATGAGCTTAATCCGCCTGCGTACGAACATGGAACGCAGGTTTCAAGAAGCCGGCGCCAAGGGCCCCCTTTGGGAAGAGATCGCCTCAAACATGTCTCGTCTAGGATACGACCGTAGTGCCAAGAGATGCAAGGAAAAGTGGGAGAACATAAACAAATATTTCAGAAAAGCCAAGGACAGTAACAGAAAGAGGCCTGAGAATTCCAAGACCTGCCCTTATTTTCAACAACTTGATTCACTCTACCGTCAGGGAGCTCTGGGATTCTCAAACGGCGGAAGCAGTACCACTGCCACGTCCACTAGTACGAAACTATCAAACCCGCCGGACGGCGTTCATGACCAGACCACGACTGACGAACTCGTATTGCAACCCTGCACAAGTAGTCACGAGAACAATGAGCACCGAGAGGCTGTGGAGATCTTAGGACAGCTCATGCCATCATCTGAAGGCGGTTGTACTCACAATAATATCAACAATGATAATAACAATAATGGCAGTAACGGCCACCCAACACCCGGAGCTTCTTCCAATAATAATAACTGCGTGCAGTTCTTCTCGGGGGCAGTAGAAAATGGATGCAATTGGGAGGGCTATCCAATGAAGCTCAAAATCAAGCAGCAGCAGCAACAGCATTAA___AGTACCACTCTGCCAGGCGTGCGGAAACAACAGCCATCGCCATTAAACCACTCTGTGAGACTTGCATACATTCTAGCTATCTATTTTTTTGCTTAATGTATTTTCCATTGCTCGCTGCAATATCATTTGTGTTTCTTTATTTCTTTTTGAGAATTATCTTGGACGAAGTAATTTGCTCGCAGTCGGAGCAAATATATTTAGGAAGTAGGAAGTAGATGATGAAATATAGCAATATAATGCATGTGTACTTAAGTCCTTCGTTTTGTATTATTCCCAATGAATTAGTCATTATCCTTC

Fln Alignment:

Contig1475___GSGG----NGRWPRQETLTLLKIRSEMDSKFREATHKGPLWDEVSRALAEHGYQRSSKKCREKFENLYKYYKKTKEGKAGRQDGKHY
A9NRE1______________GGGGPKKRSKNWKRAEVLRLIKFRAEMESRFAKSARRAALWEELAELLGAEGIKRDGKQCREKWDKLMAEFKDVSDGKRDRSESPYY

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
755	11	88			0.923564
954		14	85		0.993533
955		14		85	0.993533
956	14			85	0.993533
977		20		80	0.995493
1099	20		80		0.995493
1100		60		40	1.0
1102			80	20	0.995493
1293		25		75	1.0
1335		14		85	0.993533
1395	80			20	0.995493
1530	80	20			0.995493
1531	20	80			0.995493
1708		20	80		0.995493
1711	80			20	0.995493
2094			75	25	0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
308	320	TGC TGC TGC TGC T	13
1932	1943	GCT GCT GCT GCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain