SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1437

Length: 1151 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1437 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycosyl transferase family 1 protein [Noccaea caerulescens]	-	-	61%
FL-Next	sp=GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	glycosyl transferase family 1 protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	response to osmotic stress	GO:0006970	Biological Process	76%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	76%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	76%
Blast2go	protein N-linked glycosylation	GO:0006487	Biological Process	76%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	76%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	0.0	-
Sma3	EXTL2, alpha-1,4-N-acetylhexosaminyltransferase	IPR015338	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9XEE9

Fln msg: your sequence is shorter than subject: 321 - 463

Fln protein: NVFTYPVARLFGCKVACYTHYPTISSDMLSRVLSRNSMYNNVNAIASSFWLSRGKAVYYKFMTWTYGWVGFYSNLAMVNSSWTQSHIEKLWNIPQRIRRVYPPCNTLSLQALPLERPEKLQNFISVAQFRPEKAHGIQLEAFAIAMKRVNMEAPEHPDVQFVRRLQIVGSCRNKEDEERLLHLRKKCSELGIDKQVEFRENVNYNDLVDLLGGAIAGLHSMTDEHFGISIVEYMAAGAVPIAHNSAGPKMDIVLDEDGQKTGFLAENVDEFGDAIYVLMTMPEAERLNIAAAARKRASRFSEERFYEDFKAAMHDLLKEL*

Protein Length: 322

Fln nts: AATGTCTTCACATACCCTGTTGCACGTTTGTTTGGCTGCAAGGTTGCTTGTTACACACATTATCCAACAATCAGTTCAGATATGCTTTCTCGTGTTCTGAGCCGCAATTCAATGTATAATAATGTTAATGCCATTGCAAGCAGCTTTTGGTTATCGAGAGGTAAGGCAGTTTACTACAAGTTTATGACTTGGACATATGGATGGGTAGGTTTCTATTCAAACTTGGCAATGGTCAACTCTTCATGGACACAATCTCATATTGAAAAGCTATGGAACATACCTCAACGAATTAGGAGAGTGTACCCTCCCTGCAATACGCTCTCTCTCCAGGCACTTCCTTTGGAGAGACCAGAGAAATTACAGAATTTCATCTCAGTTGCTCAATTTCGACCAGAGAAGGCCCATGGTATTCAACTAGAGGCTTTTGCCATTGCCATGAAAAGAGTAAACATGGAAGCACCAGAACATCCGGATGTGCAATTTGTAAGGAGGCTTCAAATTGTTGGAAGCTGTCGAAATAAGGAAGATGAAGAGAGACTACTTCATTTAAGGAAGAAATGCTCTGAACTGGGAATTGATAAACAAGTTGAATTTCGTGAGAATGTGAATTACAATGACCTGGTGGATCTCCTTGGAGGGGCTATTGCCGGCCTTCATTCGATGACGGATGAACATTTTGGCATAAGTATTGTGGAATACATGGCAGCTGGTGCAGTGCCAATTGCTCACAATTCTGCGGGACCAAAGATGGACATTGTTTTGGATGAAGATGGACAAAAGACTGGGTTTCTAGCCGAAAATGTAGATGAGTTTGGTGATGCTATATATGTTCTTATGACAATGCCAGAGGCAGAGCGCTTAAACATTGCTGCAGCTGCAAGAAAGCGTGCATCTAGGTTTTCTGAGGAGAGATTTTATGAAGATTTTAAGGCTGCAATGCATGATTTGTTAAAAGAGTTGTAG___ATTGTAGATCTACAGCTAAGAAAATGACATAGCAGCTGAAGAGTGTGTTCAGTTTGTAGAAGCTGTCATTCACAGCTCTGCATCATAAAATCTTGATATAAAATTTTAGTTATTGCGAAAAGAAATTTCTAGCCATGACTGTGAGATGAACAATATACAGGACTGATCTTAACATTGAATAAACTGTT

Fln Alignment:

Contig1437___FTYPVARLFGCKVACYTHYPTISSDMLSRVLSRNSMYNNVNAIASSFWLSRGKAVYYKFMTWTYGWVGFYSNLAMVNSSWTQSHIEKLWNIPQRIRRVYPPCNTLSLQALPLERPEKLQNFISVAQFRPEKAHGIQLEAFAIAMKRVNMEAPEHPDVQFVRRLQIVGSCRNKEDEERLLHLRKKCSELGIDKQVEFRENVNYNDLVDLLGGAIAGLHSMTDEHFGISIVEYMAAGAVPIAHNSAGPKMDIVLDEDGQKTGFLAENVDEFGDAIYVLMTMPEAERLNIXXXXXXXXXXXXXXXFYEDFKAAMHDL
Q9XEE9______________FTYPLARIFGCKVVCYTHYPTISLDMISRVRQRNSMYNNDASIAKSNWLSTCKLVYYRAFSWMYGMVGSCTHLAMVNSSWTKSHIEVLWRIPERITRVYPPCDTSGLQAFPLERSSDPPKIISVAQFRPEKAHMLQLEAFSLALEKLDADVPR-------PKLQFVGSCRNNSDEERLQKLKDRAVELKVDGDVQFYKNAMYRELVELLGNAVAGLHGMIDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLEEDGQKTGFLAETVEEYAEAILEIVKMNETERLKMAESARKRAARFSEQRFCEDFKTAIRPI

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
474	33	66			0.997452
512	28		71		1.0
649	88	11			0.923564
653	88			11	0.923564
728	85			14	0.993533
729	85			14	0.993533
903	12		87		0.992554
904		12		87	0.992554
905	12		87		0.992554
907		87		12	0.992554
1004	16	83			0.994512
1005	80	20			0.995493
1007	80			20	0.995493
1008	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain