SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1433

Length: 1301 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene1433 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aquaporin, MIP family, NIP subfamily n=2 Tax=Malpighiales RepID=B9GMB9_POPTR	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	mip nip subfamily	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	borate transmembrane transport	GO:0035445	Biological Process	76%
Blast2go	arsenite transport	GO:0015700	Biological Process	76%
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	76%
Blast2go	glycerol transport	GO:0015793	Biological Process	76%
Blast2go	cellular response to boron-containing substance levels	GO:0080029	Biological Process	76%
Blast2go	borate uptake transmembrane transporter activity	GO:0080138	Molecular Function	76%
Blast2go	borate transmembrane transporter activity	GO:0046715	Molecular Function	76%
Blast2go	glycerol transmembrane transporter activity	GO:0015168	Molecular Function	76%
Blast2go	arsenite transmembrane transporter activity	GO:0015105	Molecular Function	76%
Blast2go	urea transmembrane transporter activity	GO:0015204	Molecular Function	76%
Blast2go	water channel activity	GO:0015250	Molecular Function	76%
Blast2go	lateral plasma membrane	GO:0016328	Cellular Component	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%
Blast2go	urea transmembrane transport	GO:0071918	Biological Process	76%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Aquaporin	IPR012269	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB86

Fln msg:

Fln protein: MADCEEIPSAPQTPGTPGAPLFGVRVDKGSTGKRTLLHGCNSCLSMESWAEERMLSDLPAALPSASLAKKVVAEFIGTFILIFAGTATAIVNQKTDGSVTLLGLAASGGLGIMIVILSTGHISGAHVNPSLTIAFAALRQFPWIQVPAYMGAQVLGSICAAFALKLIFHPFASGGVTIPAGSYAQAFALEFIITFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGSNSGGSMNPVRTLGPAIAAGNYKGIWIYLLAPVIGALCGAAAYTVVRLKGEDNQGRPTRSFRR*

Protein Length: 296

Fln nts: GTCATGAATTCATAAAAGAGAGCCTCGCTGGCCTCTGGTTTTTCTGATCCGTCCCTCTGCCGAACGGGTAGCTGTAGTTTGTTTTGTGTACAGT_-_ATGGCCGATTGCGAGGAGATTCCATCAGCTCCACAGACCCCGGGAACTCCTGGGGCGCCTCTCTTCGGTGTTAGGGTTGACAAGGGCTCAACAGGGAAGAGAACGCTGCTTCACGGTTGCAATTCATGTCTGTCAATGGAATCATGGGCCGAGGAACGCATGTTATCAGATTTGCCAGCCGCACTGCCCTCCGCTTCTCTTGCAAAAAAGGTCGTAGCGGAGTTCATTGGAACATTCATTCTGATATTTGCCGGGACAGCAACCGCCATTGTCAACCAAAAAACCGACGGCTCTGTTACTCTTCTAGGACTGGCGGCTTCAGGCGGCTTGGGTATAATGATCGTCATATTGTCGACTGGCCACATATCCGGTGCTCATGTCAATCCATCCCTGACAATTGCGTTCGCAGCTTTGCGCCAGTTTCCCTGGATTCAGGTTCCGGCCTACATGGGAGCTCAGGTTCTTGGTTCCATATGTGCGGCGTTCGCTCTGAAGTTGATATTTCATCCATTCGCGAGCGGTGGGGTTACGATTCCCGCAGGAAGCTACGCTCAGGCTTTTGCTTTGGAATTCATCATCACTTTCAATCTCATGTTCGTCGTTACAGCAGTAGCCACAGACACTCGAGCTGTGGGTGAACTTGCAGGAATTGCAGTAGGGGCTACGGTTATGCTCAATATTCTCATCGCAGGATCGAACTCCGGAGGTTCCATGAATCCGGTTCGAACCCTGGGGCCTGCAATTGCAGCAGGCAACTACAAAGGCATCTGGATATACCTCTTAGCGCCCGTAATTGGAGCATTGTGCGGCGCTGCGGCCTATACTGTGGTTCGTCTGAAGGGGGAGGATAACCAGGGAAGGCCTACCAGGAGTTTCAGGAGGTGA___TTCGTGTCTATATCAGGAAAATCGACTGCTACTACACCATTATGTAATCCGTTGTTCCTATTTTAGTAAAGTATTTGCATGAGTAATAAGTTAATAATAATACGTCATATACTAATGTGTGATCTGTAACAGTGGTAAGGGAAGTCGGTATAAAATAACATGGGTGATGATTGGAAATATAAAAATGGGTGCAGAGTGCTATGTCTGCCTTTGTTTCCTGTAATTGGCAGACGAGTTTTACTGTAATTGGCCAGGCGAGCTTTTATTTATATATACACTTGTAGCTTTGAATAAAGAAATATACGGTCGATTTCAGATTGTC

Fln Alignment:

Contig1433___MADCEEIPSAPQTPGTPGAPLFGVRVDKGSTGKRTLLHGCNSCLSMESWAEERMXXXXXXXXXXXXXAKKVVAEFIGTFILIFAGTATAIVNQKTDGSVTXXXXXXXXXXGIMIVILSTGHISGAHVNPSLTIAFAALRQFPWIQVPAYMGAQVLGSICAAFALKLIFHPFASGGVTIPAGSYAQAFALEFIITFNLMFXXXXXXXXXXXVGELAGIAVGATVMLNILIAGSNSGGSMNPVRTLGPAIAAGNYKGIWIYLLAPVIGALCGAAAYTVVRLKGEDNQGRPTRSFRR
D5AB86______________MTDCEDIPSAPQTPGTPGAPLFGVRVDKGSSGKRTLLQGCNSCLSMEAWAEERMLSDLPAALPSASLAKKVIAEFIGTFILIFAGTATAIVNQKTDGSVSLLGLAASGGLAIMIVILSTGHISGAHVNPSLTLAFAALRQFPWIQVPAYMGAQVLGSICASFTLKLIFHPFMSGGVTIPSGSYGQAFALEFIITFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGSNSGASMNPVRTLGPAIAAGNYKGIWIYLLAPVVGALCGAAGYTVVRLKGEDNQGRPTRSFRR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
166	75		25		0.996473
267			80	20	0.995493
293	83		16		0.994512
406		12	87		0.992554
408	12	87			0.992554
409			87	12	0.992554
427		14	85		0.993533
428		14	85		0.993533
429	14		85		0.993533
430		85		14	0.993533
470	14		85		0.993533
542	85	14			0.993533
550		16	83		0.994512
1201	50	50			1.0
1242	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain