SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1419

Length: 1568 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1419

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00924, MS_channel, Mechanosensitive ion channel	-	-	5.0e-12	29%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	63%
Blast2go	gene product	-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	69%
Blast2go	membrane	GO:0016020	Cellular Component	69%
Blast2go	mitochondrion	GO:0005739	Cellular Component	69%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	0.0	-
Sma3	Mechanosensitive ion channel MscS	IPR006685	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6I664

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 95 aas, your sequence is shorter than subject: 345 - 403

Fln protein: MVDIIFQFPVQNQILRGSLAWNTNNIGLQNHQFEGKISYHGLTCLSSCTSGKLFQIYRKYSSRTTDKLNEKLATEDSITSDAGPATGASDTAGGEWMDMANSASKSIKDAIMYAGTKAKETSDELMPVLQQWMDSSPYVKDTIMPAGWTMLASILAWLVMPRMLRRLHRYAEQGSIALSLGRSGQDQVIYEKSIWGALEDPVRYLITFMAFSQLGLIVAPSTVAAQYMPQIWRGAAVLSVLWFLHRWKRNVFSRLPAVKQIAGLDREKFLALDKLSSIGLFVLGGMALAEACGVAVQSILTVGGIGGIATAIAARDILGNMLTGLSMQFSQPFSIGDTIKVYQC*

Protein Length: 346

Fln nts: ATGGGACGGACGCTGCCTGCAATTATTTTTTTATCGAGTCTCAGTAATGCATCCATATATCAGGTCAACTCTACATAGATTTGTGGACACTAATATTCCTGATGAATGATACAAACCAAAGTTGTTGTATCTATACATTGCACTATGATGGGGTTTGCTAGTGTTTTGTGCTTATCAGAATAGAAAATAATTATTATGAATGATGGCTTATCTCTATGCATCGCTATATGGCTCCATATTGCGTAAATCTAATCATGTCTCCAAATTCTTATGGTCCAACCAGCCCTCTCACTTATATCATAGCCTTTCTCATACTGATATACCATCATGCCCATTGAGGATATCCAATGGAGCACTTTGTCATGTTCATTATCTCAGTGGGTTAGAATCTATAGAAAATCGGA_-_ATGGTGGACATAATATTTCAGTTTCCAGTTCAAAATCAGATTTTACGAGGGTCCTTGGCGTGGAACACTAATAATATTGGTCTGCAGAACCATCAATTTGAAGGCAAGATTTCATATCATGGGCTTACTTGTTTATCATCTTGTACATCTGGGAAACTATTCCAAATTTATCGAAAATATTCTTCCCGAACCACTGACAAATTGAATGAGAAGTTAGCCACAGAAGATTCAATTACATCTGATGCAGGACCAGCTACTGGAGCCAGTGATACAGCAGGCGGTGAATGGATGGATATGGCAAACAGTGCTTCAAAATCCATTAAAGATGCTATTATGTATGCAGGAACAAAAGCCAAAGAGACATCAGATGAGCTTATGCCAGTTTTGCAGCAATGGATGGACTCATCTCCTTATGTAAAAGATACCATTATGCCAGCTGGCTGGACAATGCTAGCATCAATATTAGCGTGGCTGGTCATGCCAAGAATGCTCAGAAGGCTTCATCGGTATGCTGAACAAGGTTCCATAGCATTATCTTTGGGGCGCTCAGGACAGGATCAGGTGATCTATGAGAAAAGTATTTGGGGTGCTTTGGAGGACCCTGTACGATATTTAATCACTTTCATGGCATTTTCACAGTTGGGTTTGATTGTTGCACCCAGCACAGTTGCTGCTCAATACATGCCACAAATCTGGAGAGGTGCGGCTGTTCTCTCAGTACTATGGTTTCTCCATAGGTGGAAAAGAAATGTATTTTCTCGTTTACCTGCTGTCAAACAGATTGCTGGGCTTGACAGGGAAAAATTCCTGGCTTTAGACAAACTCTCTTCCATTGGCCTTTTTGTTTTGGGAGGAATGGCTTTAGCTGAGGCTTGTGGAGTTGCTGTACAGTCCATTTTAACCGTAGGGGGAATAGGAGGTATTGCAACTGCAATTGCAGCAAGGGACATACTTGGCAATATGCTTACCGGATTATCCATGCAATTTTCTCAGCCCTTCTCAATTGGAGACACGATTAAAGTATACCAGTGTTGATGTTTAGAATGTTTAGTGTTTGGTAGTGATGCACAAGGTGTTGTTAGCCTAAATTTAAATAACTGATGCTTGTGTGCACATTAATTTATTCTGATGTGGGATTTTGCTTGGAAAGGAAACAAACTATTC

Fln Alignment:

Contig1419___PATGASDTAGGEWMDMANSASKSIKDAIMYAGTKAKETSDELMPVLQQWMDSSPYVKDTIMPAGWTMLASILAWLVMPRMLRRLHRYAEQGSIALSLGRSGQDQVIYEKSIWGALEDPVRYLITFMAFSQLGLIVAPSTVAAQYMPQIWRGAAVLSVLWFLHRWKRNVFSRLPAVKQIAGLDREKFLALDKLSSIGLFVLGGMALAEACGVAVQSILTVXXXXXXXXXXXXRDILGNMLTGLSMQFSQPFSIGDTIK
F6I664______________PDVSNSGVMGSDWLDKVKDVWQSTVDAAAYRGQKAKETSDELAPYVDQLLDSLPYLKTVVIPVGCTLTATILAWAVMPRLLRRFHKYATQGSAVLLLGSLPEEQVPYEKSFWSALEDPVRYLITFISFTQIGTMIAPTTIASQYIGPAWRGALILSFVWFLHRWKTNVFARALAAQSVVGLDREKLLALDKLSSVGLFVLGLMALAEACGVAVQSILTVGGIGGVATAFASRDILGNVLSGLSMQFSKPFSLGDTIK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1032	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain