SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1416

Length: 1431 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1416

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Cytochrome P450 750A1; AltName: Full=Cytochrome P450 CYPC gb\|AAX07433.1\| cytochrome P450 CYPC [Pinus taeda]	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	cytochrome p450	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	71%
Blast2go	heme binding	GO:0020037	Molecular Function	71%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	71%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	71%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNX9

Fln msg: your sequence is shorter than subject: 416 - 462

Fln protein: SAAAKHLSFNCADISFSPYRAYWTQMRKLCALELLSSRRLDYFRSIREDEVTAMIRSIINSDAHKGSCPLNINQTTSSLATAILCRMAFSKRYSEQESRAFSSLVKESSLLLGSFNIGEYIPSLDWMDLQGLNRWVKKLHSTQDHLLEKIIEEHVAQNGANNKHDLVDALLAASADKDSEFQISRDGIKGVLFDMLLGALDTTPTVIEWAMSEALSNPAVMRKLQEELERVVGLERMVRESDLPQLVYLQAMVKETLRFHPAGPFLIRRLTAKSCNVMGYDIPHNTCVIFNLWAIGRNPNTWEDAECFKPERFIERVGSEIDANGDQNFGWLPFGAGRRRCPGQQLGTLLVELGVAQLLHCFNWRLPSDDMNGANQELDMTERFNGLTLPKAHELRAIPTPRLNASATSNRTSFR*

Protein Length: 417

Fln nts: GTCGGCAGCTGCTAAACATTTGTCATTTAATTGCGCGGACATCAGCTTTTCTCCATATAGGGCTTACTGGACGCAAATGCGTAAGCTCTGCGCTTTGGAGTTGCTGAGCTCCAGGCGCTTAGATTACTTCCGCTCTATTAGAGAAGACGAAGTCACTGCTATGATTCGTTCTATTATTAATTCAGATGCCCACAAAGGCTCTTGTCCTTTAAACATCAACCAAACTACGTCATCCCTTGCAACGGCTATACTTTGCAGGATGGCCTTCAGTAAAAGATATTCTGAGCAAGAATCAAGAGCTTTTAGTTCATTGGTCAAGGAAAGTTCACTGTTACTCGGCTCATTTAATATTGGAGAATACATACCTTCCTTGGACTGGATGGATTTGCAAGGTCTCAACCGTTGGGTGAAGAAGCTACATTCGACACAAGACCACTTGTTAGAGAAAATAATAGAGGAACATGTTGCGCAGAACGGAGCCAACAACAAGCATGATCTTGTGGATGCCTTACTTGCAGCCTCTGCGGATAAGGATAGCGAGTTCCAAATTTCACGAGATGGTATAAAAGGAGTCCTCTTTGATATGTTGCTTGGTGCCTTGGACACGACGCCTACAGTGATAGAGTGGGCAATGTCAGAAGCGTTAAGTAACCCGGCAGTGATGAGGAAGCTTCAGGAGGAGCTGGAGCGCGTCGTTGGATTGGAGCGCATGGTACGCGAATCTGATCTACCTCAACTCGTTTATTTACAGGCCATGGTAAAAGAAACGCTTCGATTCCACCCAGCAGGGCCTTTTTTGATCCGCCGCTTAACTGCTAAATCCTGCAATGTAATGGGCTATGATATCCCCCATAATACTTGCGTTATCTTTAATCTTTGGGCGATTGGGAGGAACCCAAATACATGGGAAGACGCCGAATGCTTCAAACCTGAAAGATTCATCGAAAGAGTTGGCTCGGAGATAGATGCAAATGGAGATCAAAACTTTGGGTGGCTTCCCTTCGGCGCAGGCAGGAGAAGATGCCCTGGGCAGCAATTGGGAACGCTTCTTGTAGAGCTTGGGGTGGCTCAACTCCTTCACTGCTTCAACTGGAGGCTTCCTTCGGATGACATGAATGGGGCAAATCAAGAACTGGATATGACCGAAAGATTCAATGGACTCACGTTGCCCAAGGCTCATGAACTCAGGGCTATTCCAACACCACGGCTTAATGCATCGGCAACCTCAAATAGGACTTCATTTCGGTAA___TATCATATGTGGAAAGAGAAGTGTTTAGGTGTAAAAACAGTCCACAAATAATGGCGTAAGAAGCGTGGGTAGTAGGAAATAAATAATGGCGTAAGAAGCGTGGGTAGTAGGAAATAAATATATATGTAAAGTGCAAATATCTATAAAGTGCACTATACAAATCTATTATGGTTGTTTTAAAG

Fln Alignment:

Contig1416___SAAAKHLSFNCADISFSPYRAYWTQMRKLCALELLSSRRLDYFRSIREDEVTAMIRSIINSDAHKGSCPLNINQTTSSLATAILCRMAFSKRYSEQESRAFSSLVKESSLLLGSFNIGEYIPSLDWMDLQGLNRWVKKLHSTQDHLLEKIIEEHVAQNGANNKHXXXXXXXXXXXXXXSEFQISRDGIKGVLFDMLLGALDTTPTVIEWAMSEALSNPAVMRKLQEELERVVGLERMVRESDLPQLVYLQAMVKETLRFHPAGPFLIRRLTAKSCNVMGYDIPHNTCVIFNLWAIGRNPNTWEDAECFKPERFIERVGSEIDANGDQNFGWLPFGAGRRRCPGQQLGTLLVELGVAQLLHCFNWRLPSDDMNGANQELDMTERFNGLTLPKAHELRAIPTPRLNASA
B8LNX9______________SAATKHLSYNFADIAFTPYSPYWRHMRKLCALELLSSKPLDYFRFIREEEASAMIRSIINSD---DSLPLSIKQTVSCLSTAIICRMAFNRKYSDQELRAFNSMIRESFLLLGSFNIGDYIPYLDWMDLQGLNRRMKKLHKTHDYLLEKVIEEHVARNDPKMTHDLVDVLLAASAEKDGEFQVSRDSIKGVLFDMLLGGSDTAPTAIEWAMSEALRNPPVMKKLQDELERVVGLGRMVCESDLPRLVYLQAVVKETLRLYPSGPFLTRHLSAASCNVLGYEIPHDTVVLVNDWAIGRDRNSWEDAENFIPERFMERVGSEVDANGDQNFACLLFGGGRRRCPGQQLGTLIVEFGLAQLLHCFNWRLPLDDINGQNQELDMTERFNGVTMGKARELWAIPTPRLECIA

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
268	10	90			0.90298
327		71		28	1.0
578	25			75	0.996473
579			25	75	0.996473
582	75	25			0.996473
585		25		75	0.996473
587		25		75	0.996473
618		20		80	0.995493
721	87		12		0.992554
725	12		87		0.992554
726	87	12			0.992554
727			12	87	0.992554
754		88		11	0.923564
804	14		85		0.993533
814		14		85	0.993533
829		11		88	0.923564
886			11	88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain