SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1408

Length: 1462 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1408

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial substrate carrier family protein [Arabidopsis thaliana] dbj\|BAA97309.1\| mitochondrial carrier protein-like [Arabidopsis thaliana] gb\|AAP40437.1\| putative mitochondrial carrier protein [Arabidopsis thaliana] gb\|AAU90078.1\| At5g64970 [Arabidop	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	mitochondrial substrate carrier family protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	89%
Blast2go	mitochondrial transport	GO:0006839	Biological Process	89%
Blast2go	binding	GO:0005488	Molecular Function	89%
Blast2go	transporter activity	GO:0005215	Molecular Function	89%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	89%
Blast2go	integral to membrane	GO:0016021	Cellular Component	89%
Blast2go	plastid	GO:0009536	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAX1

Fln msg:

Fln protein: MVSRTFVAPLERLKLEYIVRGEQKHIVELIQSITTSQGLKGFWKGNVVNLLRTAPFKAINFYAYDTYRKKLLQMTGNEDATNFERFVAGAAAGITATILCIPMDTIRTKMVAPGGEVLGGVIGVCRHMVQTEGFFSLYKGLLPAIISMAPSGAVFYGVYDILKSAFLHSPEGKERLRLMQAAGKEESNALEQLELGPMRTLLYGAIAGACAEAATYPFEVVRRHLQMQGPETRLNALATCAKIMEKGGVGALYAGLIPSMLQVLPSAALSYFVYEFMKIVLRVE*

Protein Length: 286

Fln nts: TGCTTTCAATACTTCCAAGCATTTGTGGGCTGGTGCTGTTGCAGCA_-_ATGGTTTCCAGAACTTTTGTTGCCCCATTGGAGAGATTGAAGCTGGAATATATAGTACGTGGTGAGCAAAAACACATCGTCGAGCTTATTCAGTCCATAACCACATCTCAGGGATTGAAAGGCTTTTGGAAAGGCAATGTTGTCAACCTACTTCGTACGGCACCTTTTAAAGCAATCAACTTTTATGCTTATGATACATATCGGAAAAAACTGCTTCAAATGACAGGCAATGAAGATGCAACAAACTTTGAGAGGTTTGTTGCAGGTGCTGCAGCAGGCATTACTGCCACTATTCTTTGCATACCTATGGACACTATCCGCACGAAGATGGTTGCACCAGGCGGTGAAGTACTAGGAGGTGTTATTGGGGTTTGCCGGCACATGGTTCAGACAGAGGGTTTCTTTTCATTATACAAGGGTTTGTTACCAGCTATTATAAGCATGGCACCTTCAGGTGCAGTGTTTTATGGTGTCTATGATATATTAAAATCAGCTTTTCTCCACTCACCAGAAGGCAAGGAAAGGCTCCGTCTCATGCAGGCAGCAGGAAAAGAAGAATCAAATGCTTTAGAACAGTTGGAGTTGGGTCCAATGCGGACTCTATTATATGGTGCCATAGCTGGTGCATGTGCTGAGGCTGCAACGTATCCATTTGAAGTGGTTCGTAGACATCTTCAGATGCAAGGACCTGAGACAAGGTTGAATGCATTGGCAACTTGTGCAAAGATAATGGAGAAAGGTGGTGTTGGTGCACTCTATGCAGGCCTTATTCCTAGTATGCTTCAGGTCTTACCTTCTGCTGCACTTAGTTACTTTGTCTATGAGTTCATGAAAATTGTTCTGAGAGTAGAGTAA___CAGAGTGGGGCAGCCCCTATTTTGCCTCTATTTTTGCTCGTCAAGTTTTGCAAGTTTTTGTGGCAGACAGTATACAAGAGTATTATGGATAATATTGGAACTAAAAGGACTATGAATATGTTTGTCTTTGAATAATTATATCATTCATCTAACATGAATTTTTTTGAGGCTATTGAAAGCTTGATGTCCATGCATAGGGTGTGCACAAGCAGCACAACTATACTTGAACGGGCATCTGAGATTCAGAGGCATGAGTCTCATTATAATTGTTTTCTTAGATCATGAAAGTTGATGGCAAGTGGAGACTACTAGGTTCATTGGTGTGAACTTTGTAGCTTTTTTCCTTGTATTTTGCAAGAAAATTTCCTTTGCCACTATATGGTATTTCAAACTACACTATTCGGTGATTGAGTTCAGGCCATTACAAGCTGGTTTGTTGATTGTTAGTCTGACTAGTTTGTAGCCGAATAAAATGTGTGTCAAGCTACGGAAGCTAATGTTCAATAAAAGCTTGTGAATTATGCAGGCTAATCAATTGTTTGCCAGAAGAAAAGGCCGGCT

Fln Alignment:

Contig1408___PFKAINFYAYDTYRKKLLQMTGNEDATNFERFVXXXXXXXXXXXLCIPMDTIRTKMVAPGGEVLGGVIGVCRHMVQTEGFFSLYKGLLPAIISMAPSGAVFYGVYDILKSAFLHSPEGKERLR-------------LMQAAGKEESNALEQLELGPMRTLLYGXXXXXXXXXXTYPFEVVRRHLQMQGPETRLNALATCAKIMEKGGVGALYAGLIPSMLQVLPSAALSYFVYEFM
D5AAX1______________PFKSINFMTYDMYCNWLLKIPGKGEITNYDRLAAGAVSGITATMLSLPMDTIRTRLIAPGGEALGGVVGCFQHMVRTEGFFSLYKGLMPTLLSMAPASAVFYGVYDILKAAYLSSPKVQEQLRQRIRLERERQETLKADINTEENSDSRNQTEIGPIRTLLYGAIAGACAETVTYPLEVVRRHLQLQ-ETTGLGLLATFTYMVKKDGARALFAGVLPSTMQVFNKSHLPDIVTEVL

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
692	20		80		0.995493
693		80		20	0.995493
694	80		20		0.995493
695	80		20		0.995493
773			85	14	0.993533
860	88		11		0.923564
867		11		88	0.923564
868	11			88	0.923564
911	86	8		4	0.999539
915			86	13	1.0
917	13		82	4	1.0
919	91	8			0.999807
920			82	13	1.0
921		86		13	1.0
922		85	9	4	0.999726
923		90	9		0.999872
926	90		9		0.999872
928	9			90	0.999872
929		9		90	0.999872
931		9	90		0.999842
932	9	90			0.999842
1395		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain