SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1377

Length: 1516 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene1377

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BTB/POZ domain-containing protein [Arabidopsis thaliana] ref\|NP_001077574.1\| BTB/POZ domain-containing protein [Arabidopsis thaliana] sp\|Q9XHZ8.1\|Y1178_ARATH RecName: Full=BTB/POZ domain-containing protein At1g21780 gb\|AAD41432.1\|AC007727_21 Contains simi	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	btb poz domain-containing protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	78%
Blast2go	Cul3-RING ubiquitin ligase complex	GO:0031463	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BSD	IPR005607	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3	Claudin, conserved site	IPR017974	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2K0

Fln msg: your sequence is longer than subject: 360 - 326

Fln protein: MRSLSIRFATKSLGTTFIVNTNVSIKIETVDVRMSDSKVETTARLAQWKIENLLSCSYRRSDPFKMGLWNWHLSVEKNRYLHVRLFPEPSRSSKDQPPVATFVLRIYNVAVNKRPWTSPVQDRLLRSSEDFVWPVETTFHGRFIIDVEFLDLKVASMNGGELSSIWPNEGDMQSKAIKGALRCLTHMLDDGVHTDVTINTANGSVRAHWAILAARSPVFERMFLQDFKGKESSTIDIEDISFEACMALLSYIYGGIKFEDFRDHRIALLRASEKFVIGDLKEACEDSLLEDINCKNVLERLQQAWLYQLTRLKNECFKYLFDFGKIHDVREDLNIFLQHADRKLTVEMFQEVLNVWRLI*

Protein Length: 361

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTGCACCACTTATGCTTTCAGGTCTCATAAATTAAAATATTCAGCCCTTGAAATTTCTCACAACAGAAAGAAAAGTCCTTCCGAAATCAATAGCGCCTTACAATATTCAT_-_ATGAGGTCTCTGTCCATACGGTTTGCAACAAAGTCACTAGGCACTACATTTATTGTAAACACAAATGTATCGATTAAAATCGAAACGGTGGATGTAAGGATGAGCGACTCAAAGGTGGAGACAACCGCACGGCTTGCTCAGTGGAAAATTGAGAACTTGCTTTCATGTTCTTACCGGAGGTCAGACCCATTCAAGATGGGTCTCTGGAATTGGCATCTGTCCGTGGAGAAGAACCGCTATCTACATGTTCGTTTGTTCCCCGAGCCCAGCCGCAGTTCGAAGGACCAGCCACCAGTTGCGACATTTGTGCTTCGTATCTACAACGTGGCTGTGAATAAACGACCTTGGACATCTCCGGTTCAAGATAGGTTGCTCCGGAGCAGTGAGGATTTCGTGTGGCCTGTGGAGACGACTTTTCATGGACGGTTTATCATTGATGTGGAGTTTCTAGATCTAAAAGTTGCTTCAATGAATGGGGGTGAACTTTCTTCAATATGGCCAAATGAAGGAGACATGCAAAGTAAAGCAATCAAGGGTGCTCTGAGGTGCCTTACTCATATGCTGGATGATGGGGTTCATACAGACGTTACAATAAATACTGCCAATGGTAGTGTTAGAGCACATTGGGCAATTTTAGCAGCCAGATCCCCTGTGTTTGAAAGGATGTTCTTGCAAGATTTTAAAGGTAAAGAATCATCAACAATCGACATTGAAGACATCTCTTTTGAAGCTTGCATGGCTCTTTTAAGCTACATATATGGAGGCATCAAGTTTGAGGACTTTCGAGACCACAGGATAGCATTACTCAGGGCTTCTGAGAAATTTGTTATTGGGGACTTGAAAGAAGCATGTGAGGACAGCCTTTTGGAGGATATCAATTGTAAAAATGTTCTTGAAAGGCTTCAACAAGCCTGGCTTTACCAGCTAACCCGGTTGAAGAATGAGTGTTTTAAGTACCTGTTTGATTTTGGAAAGATTCATGACGTGAGAGAAGATCTGAACATATTTTTACAGCATGCCGACAGGAAGTTGACCGTCGAGATGTTTCAAGAAGTTCTAAATGTTTGGAGGTTAATATAA___ACTGTCGACAAACCATCGTCTGTCTTTAAAACCCATAGTTACCAGAGTGTCCATGGATAAAATCACTTTATTTTCAATCTGTCCCATGTAAAGGGCTGCCACTAAACATGCAGAAAGTTGTGTTGATGTCTCAGAGAATTAACTGACATCTTTCATCAACTTAGCAATAGATGAAGAATTCAAATAGAACTATGCTGTTGGATCCATAATGTACTCGTAGTGATTTTCTCTCCAGTTGCTTTTGTATATAGATAAATAAAATTAAATGATCACTTTTCTTTACTTAGTGGACCTACA

Fln Alignment:

Contig1377___MSDSKVETTARLAQWKIENLLSCSYRRSDPFKMGLWNWHLSVEKNRYLHVRLFPEPSRSSKDQPPVATFVLRIYNVAVNKRPWTSPVQDRLLRSSEDFVWPVETTFHGRFIIDVEFLDLKVASMNGGELSSIWPNEGDMQSKAIKGALRCLTHMLDDGVHTDVTINTANGSVRAHWAILAARSPVFERMFLQDFKGKESSTIDIEDISFEACMALLSYIYGGIKFEDFRDHRIALLRASEKFVIGDLKEACEDSLLEDINCKNVLERLQQAWLYQLTRLKNECFKYLFDFGKIHDVREDLNIFLQHADRKLTVEMFQEVLNVWRL
A9P2K0______________MTESKVETTARLAQWKIESLGSCSYRRSDPFRVGIWNWHLSIEKNRYLYIRLFPEPGRISKEQPPIATFVLRIFNVGVSRRPWTSPVYDKLLRSSEDFVWPIDSSFHGRFIIDVEFLDLKIATMNGGEACSIWPNEGAMQCQATKGALKCLSRMLDDGLHTDVTINTANGSVRAHRAVLAARSSVFESMFLHDLKEKESSIINIEDISVEACMALLSYIYGGIKHEDFWNHRIALLRAADKYDIGDLKESCEESLLEDIDSKNVLERLQEAWLYQLSRLKKSCLMYLFDFGKIYDVRDDLNMFFQHADRELMIEMIQEVLNVWRV

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
621	16		66		0.988813
655		71	28		1.0
850		87		12	0.992554
851	87		12		0.992554
852			12	87	0.992554
853			12	87	0.992554
908	85		14		0.993533
909		14		85	0.993533
914	11			88	0.923564
916			11	88	0.923564
918	88		11		0.923564
1077		14		85	0.993533
1205	10		90		0.90298
1206		10		90	0.90298
1306		71	28		1.0
1309	71		28		1.0
1312	28			71	1.0
1313	71	28			1.0
1314	66	33			1.0
1315	66			33	1.0
1316			66	33	1.0
1322		66		33	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain