SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1369

Length: 1958 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1369
CGTCGTGACCTTGGCTGCACGTGATTCTTGAAGAAGACTCAGGACGTTTAACATAATCTGAGCTTTCTGGTTTTCGTGTCTTTGAAGAGTTGGGTGATCTGAGAACAGAGAGAATGGGCAGGGCTCGGGTTCGACCCTCGCCCGCGGCGACCCTGGCATTGTTTCTGGGTGCCATGAGCTTCTTGTGGGCGACCCCGCATCCACTGAGCAATGGCTTCATCCCCGCGGATGATATACATTTGAGCTGCGGTGCCTCAGGCAACCAGAAGGACTCAGACGGGCGGACTTGGGTGACCGACAAGGGCTCCAAATTTGCTCCGCCCGACTTGTCCAATTCTTTCTCAGAGACCGCCTCCTCACAGAGCCCTTCACTCCCCTCGACGGTCCCTTACATGACCGCTCGGATTTTCAAAGCCCCGGCCACATATTCCATCGCCGTTTCGCCGGGGCGACATTGGTTGAGGCTGTACTTCTACCCGTCCAACTACGGATCCTACCAGGCTACCGACGCGCTCTTCAATGTTGAGGCTAATTCCTACACGCTTCTTCACAACTTCAGCTCTGGGCAGACGGCCGACGTCCTGAACATGGCCTCGTTGCTCTATGAATACTCCATCAACGTGACCTCCAACAAGTTGAACATCACATTTTCACCAGAGAACCCGAGTTCATACGCCTTCGTCAATGGCATCGAGGTCGAATCGATGCCCAATCTCTTCGATGTAGACCCGTTACTGGTCGGGGTCGGCGCCAGTGCGACGTTTCCCATTGGTTCTTCCTATGTTTTGCAGACCATGTACAGGCTCAACGTGGGCGGGCAAAGTATTGGCCCAAGCGGGGACTCGAACCTGAGCCGGACCTGGTATGACGACACGCCTTATCTCTACGGCGCGGCCAGCGGCGTAACCTTGAGCAACGACACCAACGTGCACTACACGGCGAGTGATCCCGATTACTCCGCCCCGCAGGCGGTCTACCAATCCTTCAGATCCATGACTTTAAACTCAGAACTGAACTTGAATTCCAATTTAACGTGGATGTTGACGGCCAACGCGAATTTTACATACCTGGTCCGGCTTCATTTCTGCGAGTGGATTTACACTCTGCCGAATCAGAGGGTTTTTGATATTTATGTTAATAATCAGACTGCAGTTGAGGAATTTGATGTGATTGGAAGCGGTGTCACCGCAGGCACTGCTATGTACAGCGATTTTGTAAGTAGTCTCTCAGCGCAGTCGGACGGTAATTTCTGGGTAGCTTTACATCCTGATGCTGGCTCTAAACCTCAATATTATAATGCCCTTTTAAATGGGTTGGAACTGTTCAAGATTAACGATAGCTCGGGGAATCTGGCAGGGCCGAATCCAGTGGCCGCTGCTCCAGTGAATTACCAGGGTCCTGGTTCTAATGTGACTCCTCCTTCAAGTTCTAGCAGCAGCAGCAGCAAAGGTAAGGGTCCTGTGATTGGGGGAGTTGCTGGAGGGATTGCTGCACTAGCACTTCTTCTTGCTATCTGCTGCTTTGTTCGTCAACGCCGTAGTGGGTCAGCTGGTGACAAGCACCCTGGATGGTTGCCTCTACCACTCTATGGTGGTAACTCACACACCATTGGGAGCAAAGTTTCAACTACTTCTGGAAAGAGTGGTACTGGGAGCTATGTGTCATCTGCACCTTCCAGTTTTTGCAGACATTTTAGCTTTGCAGAGATACAAGAGGCTACCAAAAACTTTGATGAGTCGCGAATTCTTGGTGTTGGTGGTTTTGGGAAAGTTTATGAAGGAGAGATTGATGGTGGTGGTGTCAAGGTTGCAGTTAAGAGAGGAAACCCACTAGCAGAACAAGGTATCCATGAATTCCAAACAGAAATAGAGATGCTTTCTAAGCTCAGGCATCGCCATTTGGTGTCTCTTATTGGTTTCTGCATTTGTTGTAGTACATACAGCCAGCAAGTTGACATT

Ace file of the UniGene sp_v2.0_unigene1369 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	FERONIA receptor-like kinase [Brassica oleracea]	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	feronia receptor-like kinase	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	63%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	63%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	63%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	63%
Blast2go	ATP binding	GO:0005524	Molecular Function	63%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	63%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Distance to subject end: 320 aas, your sequence is shorter than subject: 615 - 656

Fln protein: MGRARVRPSPAATLALFLGAMSFLWATPHPLSNGFIPADDIHLSCGASGNQKDSDGRTWVTDKGSKFAPPDLSNSFSETASSQSPSLPSTVPYMTARIFKAPATYSIAVSPGRHWLRLYFYPSNYGSYQATDALFNVEANSYTLLHNFSSGQTADVLNMASLLYEYSINVTSNKLNITFSPENPSSYAFVNGIEVESMPNLFDVDPLLVGVGASATFPIGSSYVLQTMYRLNVGGQSIGPSGDSNLSRTWYDDTPYLYGAASGVTLSNDTNVHYTASDPDYSAPQAVYQSFRSMTLNSELNLNSNLTWMLTANANFTYLVRLHFCEWIYTLPNQRVFDIYVNNQTAVEEFDVIGSGVTAGTAMYSDFVSSLSAQSDGNFWVALHPDAGSKPQYYNALLNGLELFKINDSSGNLAGPNPVAAAPVNYQGPGSNVTPPSSSSSSSSKGKGPVIGGVAGGIAALALLLAICCFVRQRRSGSAGDKHPGWLPLPLYGGNSHTIGSKVSTTSGKSGTGSYVSSAPSSFCRHFSFAEIQEATKNFDESRILGVGGFGKVYEGEIDGGGVKVAVKRGNPLAEQGIHEFQTEIEMLSKLRHRHLVSLIGFCICCSTYSQQVDI

Protein Length: 616

Fln nts: CGTCGTGACCTTGGCTGCACGTGATTCTTGAAGAAGACTCAGGACGTTTAACATAATCTGAGCTTTCTGGTTTTCGTGTCTTTGAAGAGTTGGGTGATCTGAGAACAGAGAGA_-_ATGGGCAGGGCTCGGGTTCGACCCTCGCCCGCGGCGACCCTGGCATTGTTTCTGGGTGCCATGAGCTTCTTGTGGGCGACCCCGCATCCACTGAGCAATGGCTTCATCCCCGCGGATGATATACATTTGAGCTGCGGTGCCTCAGGCAACCAGAAGGACTCAGACGGGCGGACTTGGGTGACCGACAAGGGCTCCAAATTTGCTCCGCCCGACTTGTCCAATTCTTTCTCAGAGACCGCCTCCTCACAGAGCCCTTCACTCCCCTCGACGGTCCCTTACATGACCGCTCGGATTTTCAAAGCCCCGGCCACATATTCCATCGCCGTTTCGCCGGGGCGACATTGGTTGAGGCTGTACTTCTACCCGTCCAACTACGGATCCTACCAGGCTACCGACGCGCTCTTCAATGTTGAGGCTAATTCCTACACGCTTCTTCACAACTTCAGCTCTGGGCAGACGGCCGACGTCCTGAACATGGCCTCGTTGCTCTATGAATACTCCATCAACGTGACCTCCAACAAGTTGAACATCACATTTTCACCAGAGAACCCGAGTTCATACGCCTTCGTCAATGGCATCGAGGTCGAATCGATGCCCAATCTCTTCGATGTAGACCCGTTACTGGTCGGGGTCGGCGCCAGTGCGACGTTTCCCATTGGTTCTTCCTATGTTTTGCAGACCATGTACAGGCTCAACGTGGGCGGGCAAAGTATTGGCCCAAGCGGGGACTCGAACCTGAGCCGGACCTGGTATGACGACACGCCTTATCTCTACGGCGCGGCCAGCGGCGTAACCTTGAGCAACGACACCAACGTGCACTACACGGCGAGTGATCCCGATTACTCCGCCCCGCAGGCGGTCTACCAATCCTTCAGATCCATGACTTTAAACTCAGAACTGAACTTGAATTCCAATTTAACGTGGATGTTGACGGCCAACGCGAATTTTACATACCTGGTCCGGCTTCATTTCTGCGAGTGGATTTACACTCTGCCGAATCAGAGGGTTTTTGATATTTATGTTAATAATCAGACTGCAGTTGAGGAATTTGATGTGATTGGAAGCGGTGTCACCGCAGGCACTGCTATGTACAGCGATTTTGTAAGTAGTCTCTCAGCGCAGTCGGACGGTAATTTCTGGGTAGCTTTACATCCTGATGCTGGCTCTAAACCTCAATATTATAATGCCCTTTTAAATGGGTTGGAACTGTTCAAGATTAACGATAGCTCGGGGAATCTGGCAGGGCCGAATCCAGTGGCCGCTGCTCCAGTGAATTACCAGGGTCCTGGTTCTAATGTGACTCCTCCTTCAAGTTCTAGCAGCAGCAGCAGCAAAGGTAAGGGTCCTGTGATTGGGGGAGTTGCTGGAGGGATTGCTGCACTAGCACTTCTTCTTGCTATCTGCTGCTTTGTTCGTCAACGCCGTAGTGGGTCAGCTGGTGACAAGCACCCTGGATGGTTGCCTCTACCACTCTATGGTGGTAACTCACACACCATTGGGAGCAAAGTTTCAACTACTTCTGGAAAGAGTGGTACTGGGAGCTATGTGTCATCTGCACCTTCCAGTTTTTGCAGACATTTTAGCTTTGCAGAGATACAAGAGGCTACCAAAAACTTTGATGAGTCGCGAATTCTTGGTGTTGGTGGTTTTGGGAAAGTTTATGAAGGAGAGATTGATGGTGGTGGTGTCAAGGTTGCAGTTAAGAGAGGAAACCCACTAGCAGAACAAGGTATCCATGAATTCCAAACAGAAATAGAGATGCTTTCTAAGCTCAGGCATCGCCATTTGGTGTCTCTTATTGGTTTCTGCATTTGTTGTAGTACATACAGCCAGCAAGTTGACATT

Fln Alignment:

Contig1369___RHFSFAEIQEATKNFDESRILGVGGFGKVYEGEIDGGGVKVAVKRGNPLAEQGIHEFQTEIEMLSKLRHRHLVSLIGFCICCS
C0PRI9______________RTFTYEDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKT-IAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGS

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1062		16		83	0.994512
1203		75		25	1.0
1344			11	88	0.923564
1395	20	60	20		0.99255
1439		50		50	1.0
1882	80			13	0.999961
1883		78		14	0.999974
1886	78		21		1.0
1887	78			21	1.0
1888	78		21		1.0
1889	21	78			1.0
1893	78	21			1.0
1897		78	21		1.0
1904		23		76	1.0
1905			23	76	1.0
1913	55	44			1.0
1924		87	12		0.992554
1925	12			87	0.992554
1926		11		88	0.991528
1927	12	87			0.992554
1928			11	88	0.923564
1929		11		88	0.923564
1934	88		11		0.991528
1938	33	33	33		0.997753
1939	33	66			0.997452
1942	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
513	528	TGC TGC TGC TGC TGC T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain