SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1365

Length: 2003 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene1365
ATGGGGACTCTGACTCACATTCTCAGTGGTGACCCGCAAATACAAAATTCCTTAGCCTTTTTAACTTAAACAAAACCTTGCCCGTCACTCAGATTTCTCTGGTTTTTCCATTACCATCAGTATAGGAGGAACCATCTACTGTCTCATGGAAATTCTCCCAAGGCTTCTTTAAACGGCCAAACTGGGATCCCGCCACAAGGATTTGAATACATATCCAAACAAGCGAATTGAGATGGCAGAATCAAAAGAAAAACCCCGAGATACAGTGGAAATAGATTGTCTGAACTCAGGTTTACCACCTGATAAATTGCTCTGTGTGGGCGATCGGTTTTCAGTAGCAGCACCAGAACTGGCAATGGCAGGACAAGTAGAAGAAAATGAGGGGTTGAAGGATGGTATGGCAAAAAATTTCCTTGATTTACCTTTTGATAAATCGAACTCTGTGAGCGATCAGTTTGCAGTAGCAGCAGCAGAAGTAGCAATGACAGGACAAGTAGAAGAAAAGGAGGAGGTGAACGATGGTATGACAGAAAATTTCCTTGATCTCACAAGTTGGCAGCTTCATGATTTAGAGGATGTTGAGCTTCCTTCCCATTTGATGGATTTGGATTTGACTGCAAATAGGCTCACTGTGTTGGACCCAAGAATAGGGCATCTTACAAGGCTGCAAAAGCTCTCTCTGAGGCAGAACCTCTTCACCGACGAGGCATTGGAACCTTTGTCCCATTGGCCTTCTATTTCAGGCCTTCGGGATTTAGTGCTTAGAGACAACAAGCTCACAAAGATTCCTCGTGTAAATACTTTTAAGAATCTTGTGGTCTTTGATGTTTCCTTCAATGAGATCACTTCACTTAAGGGCATGTCAGAAGTTTCCCCCACACTGAAGGAATTTTATGTTTCTAAGAATGAGCTGACAAAGATCGAGGAACTGGATCACCTCCATGAATTACGTATACTGGAACTTGGCTCAAACAGATTACGTGTGATGGAGGGTTTGCAGAATATGACAATCCTTCAAGAGCTTTGGCTGGGTCGCAACCGTATCCGTACTGTGGAGCTGTGTGGGTTGAAATCCCTTGTTAAAATAAGCTTGCAAAGCAATCGGCTCACATCTATGCTTGGTTTTCAAGAATGCATCAACTTAGAAGAGCTATATTTGAGTCATAATGGCATCTCAAAGATGGAAGGGCTGTCCACTCTAGTCAATCTCAAAGTTCTAGATGTATCATCAAATAAGCTTACTGCTATAAGTGGGATCGAAAATCTAGCAAGGCTGGAGGACTTGTGGCTAAATGACAATCAAATAGCATCATTAGATGGCATTGATGCTATTGTTGCTGGTTCAAAGGGGACACTTACAACAATTTACCTTGAACATAATCCTTGTGCCAAGGATCCTTCTTATATAAACATATTGCGGCGTAGTTTTCCTAACATTCAGCAGATTGATTCGAATGTTGCCTGATAGATGTTGAGAAGAGTTCTTTTCTTACCATTTATGATCTTAGACCTGTCTAGCATCAGATCCAGACCATTCTATGTTTTGCACTATTTTTCTAGCAGTGAAATTTTGTACGGGTGATTATATATGTTTTTAAAAATATTTGATCCATGTCAGGGAGATAATATCCAATTTCCATGAGGAATTAAATACTGATGCACCTATAACATATAAATACAACATGTCCATCCCAGTTTTTTGTATTCACCAAGTAAGTCTCAAATTTACATGGTGAGGAGTCTTTAAGTTTATTTGATTTGTAGAAACATGAATTTTTGTAGATGATGCGCTGGAAGAGCTGTCTGATATTTTATAATATATGTCCTTTAATAATTTAAAATAACTGGTATGCCAGTTGGGACAGAAGCCATTTTTCAATATTGCAGAAAGCTGTGGTAAAATAAACTCCTGTATGGAGCTCTTTGGTAAACCCACGTCATGGTTGGGTAAGGATTGGAATATGTCAGGGAAAAATAACTATTGCATCTCCACCATGCTTCGC

Ace file of the UniGene sp_v2.0_unigene1365

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat-containing protein [Arabidopsis thaliana] gb\|AAO24571.1\| At5g19680 [Arabidopsis thaliana] dbj\|BAF00080.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED92737.1\| leucine-rich repeat-containing protein [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	71%
Blast2go	protein	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	U2A'/phosphoprotein 32 family A, C-terminal	IPR003603	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9ILS9

Fln msg: your sequence is longer than subject: 411 - 336

Fln protein: MAESKEKPRDTVEIDCLNSGLPPDKLLCVGDRFSVAAPELAMAGQVEENEGLKDGMAKNFLDLPFDKSNSVSDQFAVAAAEVAMTGQVEEKEEVNDGMTENFLDLTSWQLHDLEDVELPSHLMDLDLTANRLTVLDPRIGHLTRLQKLSLRQNLFTDEALEPLSHWPSISGLRDLVLRDNKLTKIPRVNTFKNLVVFDVSFNEITSLKGMSEVSPTLKEFYVSKNELTKIEELDHLHELRILELGSNRLRVMEGLQNMTILQELWLGRNRIRTVELCGLKSLVKISLQSNRLTSMLGFQECINLEELYLSHNGISKMEGLSTLVNLKVLDVSSNKLTAISGIENLARLEDLWLNDNQIASLDGIDAIVAGSKGTLTTIYLEHNPCAKDPSYINILRRSFPNIQQIDSNVA*

Protein Length: 412

Fln nts: ATGGGGACTCTGACTCACATTCTCAGTGGTGACCCGCAAATACAAAATTCCTTAGCCTTTTTAACTTAAACAAAACCTTGCCCGTCACTCAGATTTCTCTGGTTTTTCCATTACCATCAGTATAGGAGGAACCATCTACTGTCTCATGGAAATTCTCCCAAGGCTTCTTTAAACGGCCAAACTGGGATCCCGCCACAAGGATTTGAATACATATCCAAACAAGCGAATTGAG_-_ATGGCAGAATCAAAAGAAAAACCCCGAGATACAGTGGAAATAGATTGTCTGAACTCAGGTTTACCACCTGATAAATTGCTCTGTGTGGGCGATCGGTTTTCAGTAGCAGCACCAGAACTGGCAATGGCAGGACAAGTAGAAGAAAATGAGGGGTTGAAGGATGGTATGGCAAAAAATTTCCTTGATTTACCTTTTGATAAATCGAACTCTGTGAGCGATCAGTTTGCAGTAGCAGCAGCAGAAGTAGCAATGACAGGACAAGTAGAAGAAAAGGAGGAGGTGAACGATGGTATGACAGAAAATTTCCTTGATCTCACAAGTTGGCAGCTTCATGATTTAGAGGATGTTGAGCTTCCTTCCCATTTGATGGATTTGGATTTGACTGCAAATAGGCTCACTGTGTTGGACCCAAGAATAGGGCATCTTACAAGGCTGCAAAAGCTCTCTCTGAGGCAGAACCTCTTCACCGACGAGGCATTGGAACCTTTGTCCCATTGGCCTTCTATTTCAGGCCTTCGGGATTTAGTGCTTAGAGACAACAAGCTCACAAAGATTCCTCGTGTAAATACTTTTAAGAATCTTGTGGTCTTTGATGTTTCCTTCAATGAGATCACTTCACTTAAGGGCATGTCAGAAGTTTCCCCCACACTGAAGGAATTTTATGTTTCTAAGAATGAGCTGACAAAGATCGAGGAACTGGATCACCTCCATGAATTACGTATACTGGAACTTGGCTCAAACAGATTACGTGTGATGGAGGGTTTGCAGAATATGACAATCCTTCAAGAGCTTTGGCTGGGTCGCAACCGTATCCGTACTGTGGAGCTGTGTGGGTTGAAATCCCTTGTTAAAATAAGCTTGCAAAGCAATCGGCTCACATCTATGCTTGGTTTTCAAGAATGCATCAACTTAGAAGAGCTATATTTGAGTCATAATGGCATCTCAAAGATGGAAGGGCTGTCCACTCTAGTCAATCTCAAAGTTCTAGATGTATCATCAAATAAGCTTACTGCTATAAGTGGGATCGAAAATCTAGCAAGGCTGGAGGACTTGTGGCTAAATGACAATCAAATAGCATCATTAGATGGCATTGATGCTATTGTTGCTGGTTCAAAGGGGACACTTACAACAATTTACCTTGAACATAATCCTTGTGCCAAGGATCCTTCTTATATAAACATATTGCGGCGTAGTTTTCCTAACATTCAGCAGATTGATTCGAATGTTGCCTGA___TAGATGTTGAGAAGAGTTCTTTTCTTACCATTTATGATCTTAGACCTGTCTAGCATCAGATCCAGACCATTCTATGTTTTGCACTATTTTTCTAGCAGTGAAATTTTGTACGGGTGATTATATATGTTTTTAAAAATATTTGATCCATGTCAGGGAGATAATATCCAATTTCCATGAGGAATTAAATACTGATGCACCTATAACATATAAATACAACATGTCCATCCCAGTTTTTTGTATTCACCAAGTAAGTCTCAAATTTACATGGTGAGGAGTCTTTAAGTTTATTTGATTTGTAGAAACATGAATTTTTGTAGATGATGCGCTGGAAGAGCTGTCTGATATTTTATAATATATGTCCTTTAATAATTTAAAATAACTGGTATGCCAGTTGGGACAGAAGCCATTTTTCAATATTGCAGAAAGCTGTGGTAAAATAAACTCCTGTATGGAGCTCTTTGGTAAACCCACGTCATGGTTGGGTAAGGATTGGAATATGTCAGGGAAAAATAACTATTGCATCTCCACCATGCTTCGC

Fln Alignment:

Contig1365___TENFLDLTSWQLHDLEDVELPSHLMDLDLTANRLTVLDPRIGHLTRLQKLSLRQNLFTDEALEPLSHWPSISGLRDLVLRDNKLTKIPRVNTFKNLVVFDVSFNEITSLKGMSEVSPTLKEFYVSKNELTKIEELDHLHELRILELGSNRLRVMEGLQNMTILQELWLGRNRIRTVELCGLKSLVKISLQSNRLTSMLGFQECINLEELYLSHNGISKMEGLSTLVNLKVLDVSSNKLTAISGIENLARLEDLWLNDNQIASLDGIDAIVAGSKGTLTTIYLEHNPCAKDPSYINILRRSFPNIQQIDSNV
B9ILS9______________SSTILDLTSFQLHDLSSVDLSSSLAELDLTANRLSSLDPRIAHLSNLKKLSLRQNLIDDAAVEPFSRWDSLSALQELVLRDNKLKKIPDSGIFKNLLVFDVSFNEITSLHGLSKVSNTLKELYVSKNEVTKIEEIDHLYQLQILELGSNRLRVMESMQNFTSLQELWLGRNRIKVVNLCGLKCIKKLSLQSNRVTSMKGFEECVALEELYLSHNGIAKMEGLSTLVNLRVLDVSSNKLTSVNDIQNLTQLEDLWLNDNQIESLEGVSEAVVSSREKLTTIYLENNPCAKSTSYSAFLRQIFPNIQQIDSSV

SNPs (tot: 5)

Position	A %	G %	T %	Probability
1420		88	11	0.999952
1531	88		11	0.999952
1718	20		80	0.995493
1731	18		81	0.999994
1732		80	20	0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain