SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1358

Length: 2546 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1358
ATGGGGAATGACATAAGTAACCACTCTCTTCCGGGCCACTGATCAGAGCGAGGCTTGAAATTGCCCCCACCCAAAAACCTATTTTTCCTCCCTCCCGACCGAGCTGATGGGTATCTTGTAATTAATTATCTGTAATGGCTAGATTCTACAGTTACGCGCTTTTCATCATGGTAGATAGCCATGTGGCGTATATGGTGCTGTAGCATCTTTGTAGAGGCTTAGCAGGGTTCATGCTATTAGATAGTATACACCTGGTTGATTCAGGCCAGAGGTTTGTTCTTGAGGAAGGTGTATGTAGCTTTATTCATCCCTGTGACTGGACTAGACAGTATCTTGGTCTAGGAATCAGAAGCAAATTTCAGACAGAAGGAAGTTCGTATGGGTGTAATGCACAGAGAATGCAAGAATTGATCATTCTAAGCCCATAAGGGTAGTCTAGAGGCACATTGCAGGTCTGAGGACTGTATCTCTGTTCAAGATGGATTGTAGGAGGCTGCATTCAAGTAAAACTCTACTGGTTGTTCTCTATATTTCGGTTCTTTTAATTCCAACAGGGGCGAATGAACCGGAGGCATCACCACAGCCAAACCCTGGAATTGGTGTAAACTATGGAACGGAAGGGAACAATTTGCCATCACCGAAGCAGGTAGCCAAGATGCTTGGAAACACCATTGTCAATAGAGTCAAAATCTACAACTCAGAACCCTCTATACTGCAAGCATTTGCCAACACCGGCATCGCAGTGGTTGTGGGTCTTGAAAATGAGAAAGTGCAGAGGATAAGTGAAAGCCCAACTGCAGGCCAAGCTTGGGTGGCTCAGAGGATTGCTCCTTACTACCCTTCAACCTTAATAATTCTGATCACCGTAGGGAATGAGGTCCTTACAAATAGTGATGGGTCATTAGACTCTGCTCTAGTGCCTGCCATACAAAACATTCATTCTGGATTGGTTGCTTTAGGATTGGACGACAAGATTAAGGTATCTACTCCACATAGTATGGCTATCCTTTCAAGTTCCTTTCCTCCTTCGGCCTCCACATTTGCTACTAGTTTGCTACCAATTATGAAGCCTCTCCTTAAATTCTTGGATGATACTGGCGCTCCATTCATGGTTAATGCTTATCCTTATTTTGCATACAGAGACAATCCCAAAGAAGTTTCATTGGACTATGTGCTGTTTGGGCAGTCTCCAGGGGTGTCAGATCCAAAAGGGTTCACCTATAACAATATGCTAGATGCTCAAATTGATTCCATTTACTCTGCTATGGCTGCTTTGGGTCACAATGACACTATCCCTGTAACTGTCTCTGAGACCGGTTGGCCTTCCAAAGGAGACCCAGATGATATAGGAGTGAACCCTGACAATGCTAGAAACTATAATACCAGAGTCATCAAACATGTTACTTCCAATGCAGGAACTCCAATGAGGCCTAATAGAGTCATAGAAACATTTATTTTTGCACTTTTTAATGAGAACCATAAGCCAGGGCCAACCACTGAGAGGAACTTTGGGCTGCTAAACCCAGATGGTTCAAAAGTATATGATGTAGATTTGAGTTGTGGTTGGTGTGCATCTCCTCCTCCACCATATTCGCCTCCTGCAAGCCCACCACCTAGCCCAATTTCTTTATTCTCAGGACCACCAAAAGGTTCAAGGGGAGGCCTTGGTTTTGCTGTTTATTGCATTGCCAAACCAAGTTCTGATCCATCTGTTCTTCAAGAGTCCTTGGATTTTTCTTGTGGGCTGGGTGGTGCAGATTGTGCTTCAATTCGTCAGGGTGGACCTTGTTATAATCCAAACACCGTTCATGCCCATGCTTCATATGCAATGAATAGTTACTATCAGATTCACGGCAGAAACTACTGGAATTGTGATTTCAAAAGCACCGGTTTGGTCACATTTACTGATCCAAGCTATGGATCTTGTCACTATCCTCAAGAATGAGCATCGAATAAAACTGGCAAGGGGCTTTCAATAACTCTCTTATCCCTTCCTCTTGGATATCAATGGTTGTAAAGTCCTCTTGCCAGAACAGTCTCAGTGGACTGACTGCAATAGTCATTATTTGAATCAGTTGGTAGTTGTGATGGTGTGCTTACAAACGATTTTGTCTGCCTGAGCAATTTTAGCAGGTTATCCAAAATGTGATTAAACTTGATCGGCACATGTATTAATAGAACCACTGGGAGCCTATTCAGCGTATGTATTTATAGTACCACTGCCTAAATATGAAATTCAGGCAGCTTCTTCTGCTTCTCCAGTGAAGCTTTGTGTTTATGTTTTTCGTCCGCTATAGGCTAAGCACAGGCTATCGCAACCCGGTGGATTGGATAATTTGTATTGTTTTGAACGTATGGAGTAGAATGCTTATATTCAGCGAGGAATGAGAAGGAAATTTTGATGTAGTGTCAACTCTGTATATTTTAGAGAATACATGAATTGGTATATATGCGATTTCTGTAAACAGGCTATCGCAACCCAGTGGATTGGATAATTTGTATTGTTTTGAACGTATGGAGTAGAGTGTTTATATTCAGCGAGGAAT

Ace file of the UniGene sp_v2.0_unigene1358 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucan endo-1,3-beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9R8R1_RICCO	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	beta- -glucanase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	72%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	72%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	72%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	72%
Blast2go	Glycosaminoglycan degradation	00531	72%
Blast2go	Metabolic pathways	01100	72%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	72%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	72%
Blast2go	cation binding	GO:0043169	Molecular Function	72%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Histone H2A	IPR002119	-	-
Sma3	Peptidase C54	IPR005078	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX81

Fln msg:

Fln protein: MDCRRLHSSKTLLVVLYISVLLIPTGANEPEASPQPNPGIGVNYGTEGNNLPSPKQVAKMLGNTIVNRVKIYNSEPSILQAFANTGIAVVVGLENEKVQRISESPTAGQAWVAQRIAPYYPSTLIILITVGNEVLTNSDGSLDSALVPAIQNIHSGLVALGLDDKIKVSTPHSMAILSSSFPPSASTFATSLLPIMKPLLKFLDDTGAPFMVNAYPYFAYRDNPKEVSLDYVLFGQSPGVSDPKGFTYNNMLDAQIDSIYSAMAALGHNDTIPVTVSETGWPSKGDPDDIGVNPDNARNYNTRVIKHVTSNAGTPMRPNRVIETFIFALFNENHKPGPTTERNFGLLNPDGSKVYDVDLSCGWCASPPPPYSPPASPPPSPISLFSGPPKGSRGGLGFAVYCIAKPSSDPSVLQESLDFSCGLGGADCASIRQGGPCYNPNTVHAHASYAMNSYYQIHGRNYWNCDFKSTGLVTFTDPSYGSCHYPQE*

Protein Length: 490

Fln nts: ATGGGGAATGACATAAGTAACCACTCTCTTCCGGGCCACTGATCAGAGCGAGGCTTGAAATTGCCCCCACCCAAAAACCTATTTTTCCTCCCTCCCGACCGAGCTGATGGGTATCTTGTAATTAATTATCTGTAATGGCTAGATTCTACAGTTACGCGCTTTTCATCATGGTAGATAGCCATGTGGCGTATATGGTGCTGTAGCATCTTTGTAGAGGCTTAGCAGGGTTCATGCTATTAGATAGTATACACCTGGTTGATTCAGGCCAGAGGTTTGTTCTTGAGGAAGGTGTATGTAGCTTTATTCATCCCTGTGACTGGACTAGACAGTATCTTGGTCTAGGAATCAGAAGCAAATTTCAGACAGAAGGAAGTTCGTATGGGTGTAATGCACAGAGAATGCAAGAATTGATCATTCTAAGCCCATAAGGGTAGTCTAGAGGCACATTGCAGGTCTGAGGACTGTATCTCTGTTCAAG_-_ATGGATTGTAGGAGGCTGCATTCAAGTAAAACTCTACTGGTTGTTCTCTATATTTCGGTTCTTTTAATTCCAACAGGGGCGAATGAACCGGAGGCATCACCACAGCCAAACCCTGGAATTGGTGTAAACTATGGAACGGAAGGGAACAATTTGCCATCACCGAAGCAGGTAGCCAAGATGCTTGGAAACACCATTGTCAATAGAGTCAAAATCTACAACTCAGAACCCTCTATACTGCAAGCATTTGCCAACACCGGCATCGCAGTGGTTGTGGGTCTTGAAAATGAGAAAGTGCAGAGGATAAGTGAAAGCCCAACTGCAGGCCAAGCTTGGGTGGCTCAGAGGATTGCTCCTTACTACCCTTCAACCTTAATAATTCTGATCACCGTAGGGAATGAGGTCCTTACAAATAGTGATGGGTCATTAGACTCTGCTCTAGTGCCTGCCATACAAAACATTCATTCTGGATTGGTTGCTTTAGGATTGGACGACAAGATTAAGGTATCTACTCCACATAGTATGGCTATCCTTTCAAGTTCCTTTCCTCCTTCGGCCTCCACATTTGCTACTAGTTTGCTACCAATTATGAAGCCTCTCCTTAAATTCTTGGATGATACTGGCGCTCCATTCATGGTTAATGCTTATCCTTATTTTGCATACAGAGACAATCCCAAAGAAGTTTCATTGGACTATGTGCTGTTTGGGCAGTCTCCAGGGGTGTCAGATCCAAAAGGGTTCACCTATAACAATATGCTAGATGCTCAAATTGATTCCATTTACTCTGCTATGGCTGCTTTGGGTCACAATGACACTATCCCTGTAACTGTCTCTGAGACCGGTTGGCCTTCCAAAGGAGACCCAGATGATATAGGAGTGAACCCTGACAATGCTAGAAACTATAATACCAGAGTCATCAAACATGTTACTTCCAATGCAGGAACTCCAATGAGGCCTAATAGAGTCATAGAAACATTTATTTTTGCACTTTTTAATGAGAACCATAAGCCAGGGCCAACCACTGAGAGGAACTTTGGGCTGCTAAACCCAGATGGTTCAAAAGTATATGATGTAGATTTGAGTTGTGGTTGGTGTGCATCTCCTCCTCCACCATATTCGCCTCCTGCAAGCCCACCACCTAGCCCAATTTCTTTATTCTCAGGACCACCAAAAGGTTCAAGGGGAGGCCTTGGTTTTGCTGTTTATTGCATTGCCAAACCAAGTTCTGATCCATCTGTTCTTCAAGAGTCCTTGGATTTTTCTTGTGGGCTGGGTGGTGCAGATTGTGCTTCAATTCGTCAGGGTGGACCTTGTTATAATCCAAACACCGTTCATGCCCATGCTTCATATGCAATGAATAGTTACTATCAGATTCACGGCAGAAACTACTGGAATTGTGATTTCAAAAGCACCGGTTTGGTCACATTTACTGATCCAAGCTATGGATCTTGTCACTATCCTCAAGAATGA___GCATCGAATAAAACTGGCAAGGGGCTTTCAATAACTCTCTTATCCCTTCCTCTTGGATATCAATGGTTGTAAAGTCCTCTTGCCAGAACAGTCTCAGTGGACTGACTGCAATAGTCATTATTTGAATCAGTTGGTAGTTGTGATGGTGTGCTTACAAACGATTTTGTCTGCCTGAGCAATTTTAGCAGGTTATCCAAAATGTGATTAAACTTGATCGGCACATGTATTAATAGAACCACTGGGAGCCTATTCAGCGTATGTATTTATAGTACCACTGCCTAAATATGAAATTCAGGCAGCTTCTTCTGCTTCTCCAGTGAAGCTTTGTGTTTATGTTTTTCGTCCGCTATAGGCTAAGCACAGGCTATCGCAACCCGGTGGATTGGATAATTTGTATTGTTTTGAACGTATGGAGTAGAATGCTTATATTCAGCGAGGAATGAGAAGGAAATTTTGATGTAGTGTCAACTCTGTATATTTTAGAGAATACATGAATTGGTATATATGCGATTTCTGTAAACAGGCTATCGCAACCCAGTGGATTGGATAATTTGTATTGTTTTGAACGTATGGAGTAgAtTGTTTATATTCAGCGAGGAAT

Fln Alignment:

Contig1358___QPNPGIGVNYGTEGNNLPSPKQVAKMLGNTIVNRVKIYNSEPSILQAFANTGIAVVVGLENEKVQRISESPTAGQAWVAQRIAPYYPSTLIILITVGNEVLTNSDGSLDSALVPAIQNIHSGLVALGLDDKIKVSTPHSMAILXXXXXXXXXXXXXSLLPIMKPLLKFLDDTGAPFMVNAYPYFAYRDNPKEVSLDYVLFGQSPGVSDPK-GFTYNNMLDAQIDSIYSAMAALGHNDTIPVTVSETGWPSKGDPDDIGVNPDNARNYNTRVIKHVTSNAGTPMRPNRVIETFIFALFNENHKPGPTTERNFGLLNPDGSKVYDVDL----SCGWCAXXXXXXXXXXXXXXXXXXXXXXXPKGSRGGLGFA-----VYCIAKPSSDPSVLQESLDFSCGLGGADCASIRQGGPCYNPNTVHAHASYAMNSYYQIHGRNYWNCDFKSTGLVTFTDPSYGSCHY
A9NX81______________QRSPALGVDYGKTADNLPPPSAVAKMVQNTTISKLRLYEADPAILQAFANTGIGLVVGIGNDQIPSLSQL-TVAQNWIKNNIVPFVPATDIIGILVGNEVLFTGDGALISQLLPALQNLHTALVGVSLDQQIKVSTPHSMAILSTSVPPSAGRFSENF--DMKSLLDFLQKIGAPLMINPYPYFAYKSNPTDQTLAYSLFKPNPGFYDTNTGLTYTNMFDAQLDAVYSAMKYLGYTG-IDIVVAETGWPSVGDPTEAGASLQNAIAYNGNLIKHVTSMAGTPLRPNRYIHTYIFSLFNEDLKPGPTSERNYGLFKADMTMAYDVGLLQSPSAGPSPAPRTGGPVTATPPRAGGSVTAPPTR--TGGPVTAPPTGKVWCITKPGADEKTLEANLNYACG-QGIDCRPIQPGGPCYSPNTVACHAAYAMNAYYQAAGRNSWNCDFGQTGTLTSTDPSYGGCVY

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1445	25		75		0.996473
1636	10		90		0.90298
1990	16		83		0.994512
2124			45	54	1.0
2170	45		54		1.0
2179		37		62	1.0
2280		20		80	0.995493
2281		20	80		0.995493
2284	20	80			0.995493
2328	80	20			0.995493
2329	80	20			0.995493
2330		20	80		0.995493
2332	20	80			0.995493
2339	75	25			0.996473
2341			75	25	0.996473
2342	75			25	0.996473
2376			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain