SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene1348

Length: 2954 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene1348
ATGGGGCCGTCGTTTCTTCTGCAGATTTCTGATCGATACCCGTGGGCTACTTTTACCTTCCAGTCAAACCAATGGGTGGTGAACACCAGTGGAATTGCCTCCACTGTGGCTTATTACGCTCGAAATATTAAAATGCTTTTGCCCTCACTAGGTTTAGATTTCGAATCCTTTGAAGTCCGTTAGAGGAATAAAAGCTTCTGCCCTTTGTTAGAATCGATTGAATTTGTGAATGCATGTACTGAGATCTGTAGGAATCTAAGTAATCATGGAAGTCGATTCGAAGGCTCATCCGTTTCTTTCGTACATTCTCTCTTTGAGGCCTCTGCGGCAGCCATTGATGCTGGCCTCCAAACCATCGTCTTCGAACGCCATTGAAGTGGATCTCGAAGCCAATGAGCGGCATGGCGAGGCTCTGGTTAGAGAGATGCCTAAGCTTCTGCAGCCGGAGCTCGTGGCTAAAATGACCGGTGCTGTTTCCGATGTTATGCAGACCAGATCCGTTCTACAGTCCCTTGGAGATCGGCCGGATCACGAGGCTGTGGACGAAGCCCGTCGACGCGTTGCAGAGATCGAGCGCAATCTTTCTAGCCGATTGGAAGAAATTGCCATGGAGGAGCCACCGGAAGGCTACGATCGGGGGGCATGGCTGTCATTGCAGGCGCAGAAGGAGAAAGACGCCCGGAAGGCGGCCGATAAGGAAAAATTACCATTTAAGTCAGTTGTTCATCTTTATGAGATGCACGTTGCGTACGAGGATTTGTTGCAGGAGGCCGAAGAGAGGCTGACGAATATATATCGAGAGGCCGAGAACGGGTCACAGATGGTCCTATCCGATGATGGGAATGATGATGGTGGTGATGAGATGGATGAGGAAGTCGTACGAATACTTCTAGAGGCCACAGAAAAAAGGCTCGACCGAGTGGAGTTGAAGAGAAGGGGGCTCAATCTCTTTCCTGAGGGATTCTGCAAGATTACCACACTCGTTTTAGTTAATCTCTCCGATAATAAAATCCAGGCTGTTACGGATTCAATTGCTGGTCTTGTAAACCTGGAAACACTGGATTTGAGTGGCAACGTCCTGGTCTCTCTGCCAGATTCACTTGGACTTCTGAAAAGATTAAAATTCTTGAATGTTTCAGGAAATAAACTAAAATGTTTACCAGATAGCATTTCAATGTGCAGTGAGTTGATTGAGCTGGATGCCAGCTACAACCAGTTGATCTATTTGCCAACCAACTTCGGTTATCAGCTTGCCAACCTCCAGAAACTATTGGTTCAATTAAACAAGTTAAGGTCTTTGCCGTCTTCTTTCTGTGAACTGAAATCTCTAAGGTACTTGGACGTTCATTTCAATGAGCTACGATCTTTACCAGATGCCCTTGGAGACTTGAAAAATCTTGAGGTCCTGAATGCTAGCAGCAACTTCAGTGATTTAGTAAGTTTACCAGAATCAATTGGTGAATTAACAAACCTTGTTGAGTTGGATGTCAGCAACAATCAAATCAAGGAACTGCCATATTCATTTGGAAGTTTACAGAATTTGAAGAAGCTCAACCTGGATCAAAACCCCCTCATGACACCACCAAATGAGATTGTTGTACAGGGTGTGGAGGCTGTAAAGGAGTACATGGCCAAAAGATGGTTGGATTATTTGCTGGAAGAGGAACAAAAAAGCATGTCAGCCACTAGCAATAATCAAACAAATAATGGTTGGGTGCAATGGGGCGGTTCTGTGCTTGGAGGTTTGATTTCAGGAACGAAGGAAAGCATCAGAGGATATCTAGGGGCACCAAACAAACGTCAACTGGATCCTTACCTGGAACAGCAGTACTGAATTACTTGCCCATTAACACTTTTAATAGTTTTTATACCATGCAACTTTGCATATTAACTAGTTCTTTCTTTCTCACAGTTCTACTGTTGAGAAGACAGGAGGATAGAATCGTTTTGGGATCTACTCAATTCACCAATGTGTTTGCATCTGATTTCCAGAGTGAGGTAGAATTAACTTGTGGTGCTTGATATAGCATGCAGCTTGAATTCAGAATTTACATTTGCTCATGCAAGCAGACAAAAATGATCTTTGGGTGTTCTAGGCCATGCACATGTATACTGAAACAATATATGTATGCATTGCGAGGAAGTAGTAGGATATGATGCCCAATGACTACCCAGTCAATGCATGCACAATAGGTCTAATGACCGCCTGAATCTCCTGCCATTAACTTGTGCTTGGGTTAGCCTTGTCAACGATTAATAAGGAGTGCTGATTGACAGTTTGATCTTCAATGGGGATCTAAGGCGTCCATGATCTTAAAAATTGTTCATATTTGGTTAAAGTTGCAGGTCAAGTGAGTGTAGGATCAATGAATTGTGCTTTTGGGCAGCTAATGTTGAATATTTTGAATTAGGTTTTTTGAGAAAACGGGTTAGTAGTAGAGATAAATAGGGAAAACCAAAATTAGGGTCTTTGCAATGACTTTCACCTAATTGAGTTATATTTGATTCAGGAGCTTTGTAGTTGGAATAATTTTCCTGCAGTCTTTATTATTCTACTCAAGAAATCTTCACAAACAATGGTAATGCGAAAGCATTGATCTACCTCTTGGGAGGAACACGCAATCGCTGCGTTCATCTTTATCATTCTCTGGAACCGTTGTATTAGAACAGTGCTCTAGCTTATGGAAGCAGTTTGGTTTCTAAGCACAACTGTTTCTTTCTGTGAGAGGATAACTGCAACATCAGTTTTTCAGTCGGTTGTAGATACTAATTCAGCAGGTATAGTGGAATTATGAACGTTTTGTATTATGTTGTAGATACTAATTCAGCAGGTATAGTGGAATTATGAACGTTTTGTACTATGTTGCAGAAATAATCAAAGCAATGTAAAGGTGTTCTGGACTTAATATTCTCTTGTGGGATTTTATCTTTTGACTCGTTATACAAGTCAGACC

Ace file of the UniGene sp_v2.0_unigene1348 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Leucine-rich repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RAU9_RICCO	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	leucine-rich repeat-containing	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	microgametogenesis	GO:0055046	Biological Process	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQU6

Fln msg:

Fln protein: MEVDSKAHPFLSYILSLRPLRQPLMLASKPSSSNAIEVDLEANERHGEALVREMPKLLQPELVAKMTGAVSDVMQTRSVLQSLGDRPDHEAVDEARRRVAEIERNLSSRLEEIAMEEPPEGYDRGAWLSLQAQKEKDARKAADKEKLPFKSVVHLYEMHVAYEDLLQEAEERLTNIYREAENGSQMVLSDDGNDDGGDEMDEEVVRILLEATEKRLDRVELKRRGLNLFPEGFCKITTLVLVNLSDNKIQAVTDSIAGLVNLETLDLSGNVLVSLPDSLGLLKRLKFLNVSGNKLKCLPDSISMCSELIELDASYNQLIYLPTNFGYQLANLQKLLVQLNKLRSLPSSFCELKSLRYLDVHFNELRSLPDALGDLKNLEVLNASSNFSDLVSLPESIGELTNLVELDVSNNQIKELPYSFGSLQNLKKLNLDQNPLMTPPNEIVVQGVEAVKEYMAKRWLDYLLEEEQKSMSATSNNQTNNGWVQWGGSVLGGLISGTKESIRGYLGAPNKRQLDPYLEQQY*

Protein Length: 524

Fln nts: ATGGGGCCGTCGTTTCTTCTGCAGATTTCTGATCGATACCCGTGGGCTACTTTTACCTTCCAGTCAAACCAATGGGTGGTGAACACCAGTGGAATTGCCTCCACTGTGGCTTATTACGCTCGAAATATTAAAATGCTTTTGCCCTCACTAGGTTTAGATTTCGAATCCTTTGAAGTCCGTTAGAGGAATAAAAGCTTCTGCCCTTTGTTAGAATCGATTGAATTTGTGAATGCATGTACTGAGATCTGTAGGAATCTAAGTAATC_-_ATGGAAGTCGATTCGAAGGCTCATCCGTTTCTTTCGTACATTCTCTCTTTGAGGCCTCTGCGGCAGCCATTGATGCTGGCCTCCAAACCATCGTCTTCGAACGCCATTGAAGTGGATCTCGAAGCCAATGAGCGGCATGGCGAGGCTCTGGTTAGAGAGATGCCTAAGCTTCTGCAGCCGGAGCTCGTGGCTAAAATGACCGGTGCTGTTTCCGATGTTATGCAGACCAGATCCGTTCTACAGTCCCTTGGAGATCGGCCGGATCACGAGGCTGTGGACGAAGCCCGTCGACGCGTTGCAGAGATCGAGCGCAATCTTTCTAGCCGATTGGAAGAAATTGCCATGGAGGAGCCACCGGAAGGCTACGATCGGGGGGCATGGCTGTCATTGCAGGCGCAGAAGGAGAAAGACGCCCGGAAGGCGGCCGATAAGGAAAAATTACCATTTAAGTCAGTTGTTCATCTTTATGAGATGCACGTTGCGTACGAGGATTTGTTGCAGGAGGCCGAAGAGAGGCTGACGAATATATATCGAGAGGCCGAGAACGGGTCACAGATGGTCCTATCCGATGATGGGAATGATGATGGTGGTGATGAGATGGATGAGGAAGTCGTACGAATACTTCTAGAGGCCACAGAAAAAAGGCTCGACCGAGTGGAGTTGAAGAGAAGGGGGCTCAATCTCTTTCCTGAGGGATTCTGCAAGATTACCACACTCGTTTTAGTTAATCTCTCCGATAATAAAATCCAGGCTGTTACGGATTCAATTGCTGGTCTTGTAAACCTGGAAACACTGGATTTGAGTGGCAACGTCCTGGTCTCTCTGCCAGATTCACTTGGACTTCTGAAAAGATTAAAATTCTTGAATGTTTCAGGAAATAAACTAAAATGTTTACCAGATAGCATTTCAATGTGCAGTGAGTTGATTGAGCTGGATGCCAGCTACAACCAGTTGATCTATTTGCCAACCAACTTCGGTTATCAGCTTGCCAACCTCCAGAAACTATTGGTTCAATTAAACAAGTTAAGGTCTTTGCCGTCTTCTTTCTGTGAACTGAAATCTCTAAGGTACTTGGACGTTCATTTCAATGAGCTACGATCTTTACCAGATGCCCTTGGAGACTTGAAAAATCTTGAGGTCCTGAATGCTAGCAGCAACTTCAGTGATTTAGTAAGTTTACCAGAATCAATTGGTGAATTAACAAACCTTGTTGAGTTGGATGTCAGCAACAATCAAATCAAGGAACTGCCATATTCATTTGGAAGTTTACAGAATTTGAAGAAGCTCAACCTGGATCAAAACCCCCTCATGACACCACCAAATGAGATTGTTGTACAGGGTGTGGAGGCTGTAAAGGAGTACATGGCCAAAAGATGGTTGGATTATTTGCTGGAAGAGGAACAAAAAAGCATGTCAGCCACTAGCAATAATCAAACAAATAATGGTTGGGTGCAATGGGGCGGTTCTGTGCTTGGAGGTTTGATTTCAGGAACGAAGGAAAGCATCAGAGGATATCTAGGGGCACCAAACAAACGTCAACTGGATCCTTACCTGGAACAGCAGTACTGA___ATTACTTGCCCATTAACACTTTTAATAGTTTTTATACCATGCAACTTTGCATATTAACTAGTTCTTTCTTTCTCACAGTTCTACTGTTGAGAAGACAGGAGGATAGAATCGTTTTGGGATCTACTCAATTCACCAATGTGTTTGCATCTGATTTCCAGAGTGAGGTAGAATTAACTTGTGGTGCTTGATATAGCATGCAGCTTGAATTCAGAATTTACATTTGCTCATGCAAGCAGACAAAAATGATCTTTGGGTGTTCTAGGCCATGCACATGTATACTGAAACAATATATGTATGCATTGCGAGGAAGTAGTAGGATATGATGCCCAATGACTACCCAGTCAATGCATGCACAATAGGTCTAATGACCGCCTGAATCTCCTGCCATTAACTTGTGCTTGGGTTAGCCTTGTCAACGATTAATAAGGAGTGCTGATTGACAGTTTGATCTTCAATGGGGATCTAAGGCGTCCATGATCTTAAAAATTGTTCATATTTGGTTAAAGTTGCAGGTCAAGTGAGTGTAGGATCAATGAATTGTGCTTTTGGGCAGCTAATGTTGAATATTTTGAATTAGGTTTTTTGAGAAAACGGGTTAGTAGTAGAGATAAATAGGGAAAACCAAAATTAGGGTCTTTGCAATGACTTTCACCTAATTGAGTTATATTTGATTCAGGAGCTTTGTAGTTGGAATAATTTTCCTGCAGTCTTTATTATTCTACTCAAGAAATCTTCACAAACAATGGTAATGCGAAAGCATTGATCTACCTCTTGGGAGGAACACGCAATCGCTGCGTTCATCTTTATCATTCTCTGGAACCGTTGTATTAGAACAGTGCTCTAGCTTATGGAAGCAGTTTGGTTTCTAAGCACAACTGTTTCTTTCTGTGAGAGGATAACTGCAACATCAGTTTTTCAGTCGGTTGTAGATACTAATTCAGCAGGTATAGTGGAATTATGAACGTTTTGTATTATGTTGTAGATACTAATTCAGCAGGTATAGTGGAATTATGAACGTTTTGTACTATGTTGCAGAAATAATCAAAGCAATGTAAAGGTGTTCTGGACTTAATATTCTCTTGTGGGATTTTATCTTTTGACTCGTTATACAAGTCAGACC

Fln Alignment:

Contig1348___MEVDSKAHPFLSYILSLRPLRQPLMLASKPSSSNAIEVDLEANERHGEALVREMPKLLQPELVAKMTGAVSDVMQTRSVLQSLGDRPDHEAVDEARRRVAEIERNLSSRLEEIAMEEPPEGYDRGAWLSLXXXXXXXXXXXXXXXKLPFKSVVHLYEMHVAYEDLLQEAEERLTNIYREAENGSQMVLSXXXXXXXXXXXXXEVVRILLEATEKRLDRVELKRRGLNLFPEGFCKITTLVLVNLSDNKIQAVTDSIAGLVNLETLDLSGNVLVSLPDSLGLLKRLKFLNVSGNKLKCLPDSISMCSELIELDASYNQLIYLPTNFGYXXXXXXXXXXXXXXLRSLPSSFCELKSLRYLDVHFNELRSLPDALGDLKNLEVLNASSNFSDLVSLPESIGELTNLVELDVSNNQIKELPYSFGSXXXXXXXXXXXXXLMTPPNEIVVQGVEAVKEYMAKRWLDYLLEEEQKSMSATS--NNQTNNGWVQWGGSVLGGLISGTKESIRGYLGAPNKRQLDPYLEQQY
B8LQU6______________MEVDSKAHPFLSYILSLRPLRQPLMLASKPSSSNAVEVDLEANEQHGEALVKEMPGLLQPELVAKMMAAVSDVVQTRSVLQSLGDRPDHEAVDEASRRVAEIERNLSRRLEEIVMAEPPEGCDRAEWLSLQAQKEKDARIAADKEKLPYKTVVHLYEMHVAYEDLLHEAEERLTTIYREAESGTQPVQSVDGNDDDGDEMNEEVVRILQEASERRLDRVELTSRNLKHFPEGFCKITTLVLVNLSRNKIQAVTDSIAGLVNLETLDLSGNVLVSLPDSIGLLKRLKFLNISGNKLKSLPDSISMCSELIELDASYNQLTYLPTNFGYQLANLQKLLVQLNKLRSLPSSVCELKSLRYLDVHFNELRSLPEALGDLKNLEVLNASSNFSDLVSLPDSIGELTNLVELDVSNNQIKELPYSFGSLQNLKKLNLDQNPLMTPPNEIVVQGVEAVKEHMAKRWLDYLLEEEQKYMSANSNTNNQTNNGWVQWGSSVFGGLISGTKESIRGYLGASKKPHMESYLEQQY

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
1613		80		20	0.995493
1700		16		83	0.994512
1785	87	12			0.992554
1788			87	12	0.992554
1846	87		12		0.992554
1907		11	88		0.923564
1908		11	88		0.923564
1909		11		88	0.923564
1910	11			88	0.923564
1921	12		87		0.992554
1924	87			12	0.992554
1941		71		28	1.0
1950	83		16		0.994512
1953	83		16		0.994512
1962	83		16		0.994512
1964	16			83	0.994512
1965	83	16			0.994512
1969	83		16		0.994512
1977		16		83	0.994512
2090	33	66			0.997452
2093		66	33		0.997452
2094		66		33	0.997452
2104	66		33		0.997452
2226		33		66	0.997452
2519		85		14	0.993533
2629	12		87		0.992554
2630		87	12		0.992554
2633	12	87			0.992554
2637	87	12			0.992554
2638	12		87		0.992554
2642		87		12	0.992554
2644	12			87	0.992554
2646	87		12		0.992554
2648	83	16			0.994512
2697	73		26		1.0
2739			13	86	0.999973
2743	71	28			1.0
2744		16	16	66	0.988813
2746		33	66		1.0
2748	16	16		66	0.988813
2749			20	80	0.995493
2750		80	20		0.995493
2752	80	20			0.995493
2755	80		20		0.995493
2757	75	25			0.996473
2849	66			33	0.997452
2853		66		33	0.997452
2854		66	33		0.997452
2859		33		66	0.997452
2860		33	66		0.997452
2861	33		66		0.997452
2868	66	33			0.997452
2869			33	66	0.997452
2870	33			66	0.997452
2872		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain